Search results for "Data type"
showing 10 items of 1183 documents
Open data and digital morphology
2017
International audience; Over the past two decades, the development of methods for visualizing and analysing specimens digitally, in three and even four dimensions, has transformed the study of living and fossil organisms. However, the initial promise that the widespread application of such methods would facilitate access to the underlying digital data has not been fully achieved. The underlying datasets for many published studies are not readily or freely available, introducing a barrier to verification and reproducibility, and the reuse of data. There is no current agreement or policy on the amount and type of data that should be made available alongside studies that use, and in some cases…
Model‐based approaches to unconstrained ordination
2014
Summary Unconstrained ordination is commonly used in ecology to visualize multivariate data, in particular, to visualize the main trends between different sites in terms of their species composition or relative abundance. Methods of unconstrained ordination currently used, such as non-metric multidimensional scaling, are algorithm-based techniques developed and implemented without directly accommodating the statistical properties of the data at hand. Failure to account for these key data properties can lead to misleading results. A model-based approach to unconstrained ordination can address this issue, and in this study, two types of models for ordination are proposed based on finite mixtu…
Efficient estimation of generalized linear latent variable models.
2019
Generalized linear latent variable models (GLLVM) are popular tools for modeling multivariate, correlated responses. Such data are often encountered, for instance, in ecological studies, where presence-absences, counts, or biomass of interacting species are collected from a set of sites. Until very recently, the main challenge in fitting GLLVMs has been the lack of computationally efficient estimation methods. For likelihood based estimation, several closed form approximations for the marginal likelihood of GLLVMs have been proposed, but their efficient implementations have been lacking in the literature. To fill this gap, we show in this paper how to obtain computationally convenient estim…
Assessing the capacity of different urban forms to preserve the connectivity of ecological habitats
2011
International audience; This paper addresses the relationship between anthropogenic forest habitat fragmentation and the form of urban patterns. Using a two-step methodology we first generate 40 theoretical residential development scenarios following a repeatable procedure; the simulated urban forms are either moderately compact or fractal. Then, we compare the scenarios according to the functional connectivity of the remaining forest habitat using a graph-based approach. The methodology is applied to the urban region of Besançon (France), where forest surfaces are considered as a generic habitat for several animal species. Results obtained show that fractal scenarios of residential develop…
OMICfpp: a fuzzy approach for paired RNA-Seq counts
2019
© The Author(s) 2019.
A segmentation algorithm for noisy images
2005
International audience; This paper presents a segmentation algorithm for gray-level images and addresses issues related to its performance on noisy images. It formulates an image segmentation problem as a partition of a weighted image neighborhood hypergraph. To overcome the computational difficulty of directly solving this problem, a multilevel hypergraph partitioning has been used. To evaluate the algorithm, we have studied how noise affects the performance of the algorithm. The alpha-stable noise is considered and its effects on the algorithm are studied. Key words : graph, hypergraph, neighborhood hypergraph, multilevel hypergraph partitioning, image segmentation and noise removal.
Image retrieval system for citizen services using penalized logistic regression models
2020
This paper describes a procedure to deal with large image collections obtained by smart city services based on interaction with citizens providing pictures. The semantic gap between the low-level image features and represented concepts and situations has been addressed using image retrieval techniques. A relevance feedback procedure is proposed for Content-Based Image Retrieval (CBIR) based on the modelling of user responses. One of the novelties of the proposal is that the feedback learning procedure can use the information that citizens themselves can provide when using these services.The proposed algorithm considers the probability of an image belonging to the set of those sought by the …
Extreme minimal learning machine: Ridge regression with distance-based basis
2019
The extreme learning machine (ELM) and the minimal learning machine (MLM) are nonlinear and scalable machine learning techniques with a randomly generated basis. Both techniques start with a step in which a matrix of weights for the linear combination of the basis is recovered. In the MLM, the feature mapping in this step corresponds to distance calculations between the training data and a set of reference points, whereas in the ELM, a transformation using a radial or sigmoidal activation function is commonly used. Computation of the model output, for prediction or classification purposes, is straightforward with the ELM after the first step. In the original MLM, one needs to solve an addit…
BIAM: a new bio-inspired analysis methodology for digital ecosystems based on a scale-free architecture
2017
Today we live in a world of digital objects and digital technology; industry and humanities as well as technologies are truly in the midst of a digital environment driven by ICT and cyber informatics. A digital ecosystem can be defined as a digital environment populated by interacting and competing digital species. Digital species have autonomous, proactive and adaptive behaviors, regulated by peer-to-peer interactions without central control point. An interconnecting architecture with few highly connected nodes (hubs) and many low connected nodes has a scale- free architecture. A new bio-inspired analysis methodology (BIAM) environment, an investigation strategy for information flow, fault…
Fractional-Order System Identification of Viscoelastic Behavior: A Frequency Domain Based Experimental Study
2020
In this work, the fractional-order modeling of viscoelastic behavior is investigated based on measurement data in the frequency domain. For the results of two different test setups we apply existing parameter estimation algorithms designed for fractional-order transfer functions. These algorithms require a priori knowledge of the system structure including the commensurate order of differentiation. An iterative procedure is used to evaluate the influence of the unknown structure. The measured polymer samples show a viscoelastic stress response. We can show that integer-order models are not capable of capturing this behavior. For a set of predefined structures, the best obtained fractional-o…