Search results for "Database management system"

PASSIM – an open source software system for managing information in biomedical studies

2007

Abstract Background One of the crucial aspects of day-to-day laboratory information management is collection, storage and retrieval of information about research subjects and biomedical samples. An efficient link between sample data and experiment results is absolutely imperative for a successful outcome of a biomedical study. Currently available software solutions are largely limited to large-scale, expensive commercial Laboratory Information Management Systems (LIMS). Acquiring such LIMS indeed can bring laboratory information management to a higher level, but often implies sufficient investment of time, effort and funds, which are not always available. There is a clear need for lightweig…

Distributed image retrieval on DAISY

2006

The paper describes an application of image retrieval based on DAISY architecture (distributed architecture for intelligent system). The creation of pictorial indexes may require a number of hours depending on the size of the pictorial data base. The problem can become more complex in the case of distributed database systems. In both cases a distributed architecture can be the natural and more efficient solution. DAISY architecture is based on the concept of co-operating behavioral agents supervised by a central engagement module. Preliminary experiments, to evaluate the performance of the system, have been performed on a astronomical database and coral image

epiPATH: an information system for the storage and management of molecular epidemiology data from infectious pathogens.

2007

Abstract Background Most research scientists working in the fields of molecular epidemiology, population and evolutionary genetics are confronted with the management of large volumes of data. Moreover, the data used in studies of infectious diseases are complex and usually derive from different institutions such as hospitals or laboratories. Since no public database scheme incorporating clinical and epidemiological information about patients and molecular information about pathogens is currently available, we have developed an information system, composed by a main database and a web-based interface, which integrates both types of data and satisfies requirements of good organization, simple…

ProstateAnalyzer: web-based medical application for the management of prostate cancer using multiparametric MR imaging

2016

Objectives: In this paper, we present ProstateAnalyzer, a new web-based medical tool for prostate cancer diagnosis. ProstateAnalyzer allows the visualization and analysis of magnetic resonance images (MRI) in a single framework. Methods: ProstateAnalyzer recovers the data from a PACS server and displays all the associated MRI images in the same framework, usually consisting of 3D T2-weighted imaging for anatomy, dynamic contrast-enhanced MRI for perfusion, diffusion-weighted imaging in the form of an apparent diffusion coefficient (ADC) map and MR Spectroscopy. ProstateAnalyzer allows annotating regions of interest in a sequence and propagates them to the others. Results: From a representat…

Enhancing Privacy and Authorization Control Scalability in the Grid through Ontologies

2009

The use of data Grids for sharing relevant data has proven to be successful in many research disciplines. However, the use of these environments when personal data are involved (such as in health) is reduced due to its lack of trust. There are many approaches that provide encrypted storages and key shares to prevent the access from unauthorized users. However, these approaches are additional layers that should be managed along with the authorization policies. We present in this paper a privacy-enhancing technique that uses encryption and relates to the structure of the data and their organizations, providing a natural way to propagate authorization and also a framework that fits with many u…

"Design and application of a data-independent precursor and product ion repository."

2012

The functional design and application of a data-independent LC-MS precursor and product ion repository for protein identification, quantification, and validation is conceptually described. The ion repository was constructed from the sequence search results of a broad range of discovery experiments investigating various tissue types of two closely related mammalian species. The relative high degree of similarity in protein complement, ion detection, and peptide and protein identification allows for the analysis of normalized precursor and product ion intensity values, as well as standardized retention times, creating a multidimensional/orthogonal queryable, qualitative, and quantitative spac…

Strategies for annotation and curation of translational databases: the eTUMOUR project

2012

Altres ajuts: LSHC/CT2004-503094 The eTUMOUR (eT) multi-centre project gathered in vivo and ex vivo magnetic resonance (MR) data, as well as transcriptomic and clinical information from brain tumour patients, with the purpose of improving the diagnostic and prognostic evaluation of future patients. In order to carry this out, among other work, a database-the eTDB-was developed. In addition to complex permission rules and software and management quality control (QC), it was necessary to develop anonymization, processing and data visualization tools for the data uploaded. It was also necessary to develop sophisticated curation strategies that involved on one hand, dedicated fields for QC-gene…

Datorzinātne un informācijas tehnoloģijas: Datu bāzes un Informācijas sistēmas

2010

GPCALMA: A Grid-based tool for mammographic screening

2005

The next generation of High Energy Physics (HEP) experiments requires a GRID approach to a distributed computing system and the associated data management: the key concept is the Virtual Organisation (VO), a group of distributed users with a common goal and the will to share their resources. A similar approach is being applied to a group of Hospitals which joined the GPCALMA project (Grid Platform for Computer Assisted Library for MAmmography), which will allow common screening programs for early diagnosis of breast and, in the future, lung cancer. HEP techniques come into play in writing the application code, which makes use of neural networks for the image analysis and proved to be useful…

Indexing Method for Transitive Relationships of Product Information

2008

To successfully use a relational database management system (RDBMS) as a repository for product information, the RDBMS must efficiently process and properly answer ontological queries. The key to processing the ontological queries is whether the various semantic relationships among the concepts of the product ontology are likewise well-processed. In particular, the transitive relationships (e.g., is-a, component-of relationships) such as ancestors-descendents, parents-children, and taxonomy of products must be processed successfully. We propose an efficient index using a numbering scheme (labeling scheme) to process queries over transitive relationships. (This paper is an extended version o…