Search results for "Databases"

showing 10 items of 937 documents

Comparative analysis of virtual screening approaches in the search for novel EphA2 receptor antagonists

2015

The EphA2 receptor and its ephrin-A1 ligand form a key cell communication system, which has been found overexpressed in many cancer types and involved in tumor growth. Recent medicinal chemistry efforts have identified bile acid derivatives as low micromolar binders of the EphA2 receptor. However, these compounds suffer from poor physicochemical properties, hampering their use in vivo. The identification of compounds able to disrupt the EphA2-ephrin-A1 complex lacking the bile acid scaffold may lead to new pharmacological tools suitable for in vivo studies. To identify the most promising virtual screening (VS) protocol aimed at finding novel EphA2 antagonists, we investigated the ability of…

Cell signalingDatabases Pharmaceuticaldrug designPharmaceutical ScienceComputational biologyBiologyCrystallography X-RayMolecular Docking SimulationArticleAnalytical Chemistrylcsh:QD241-441Structure-Activity RelationshipUser-Computer Interfacelcsh:Organic chemistryPPI inhibitorsDrug Discoveryshape screeningStructure–activity relationshipPhysical and Theoretical ChemistryReceptorProtein Kinase InhibitorsVirtual screeningMolecular StructureDrug discoveryReceptor EphA2EphA2 antagonistOrganic ChemistryEphrin-A1virtual screeningEPH receptor A2C700Combinatorial chemistryMolecular Docking SimulationUniPR129Chemistry (miscellaneous)Docking (molecular)dockingMolecular Medicinepharmacophore search
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Immunoproteomic studies on paediatric opsoclonus-myoclonus associated with neuroblastoma

2016

We aimed to identify new cell-membrane antigens implicated in opsoclonus-myoclonus with neuroblastoma. The sera of 3 out of 14 patients showed IgG electron-microscopy immunogold reactivity on SH-SY5Y neuroblastoma cells. Immunoprecipitation experiments using rat brain synaptosomes and SH-SY5Y cells led to the identification of: (1) thirty-one nuclear/cytoplasmic proteins (including antigens HuB, HuC); (2) seven neuronal membrane proteins, including the Shaw-potassium channel Kv3.3 (KCNC3), whose genetic disruption in mice causes ataxia and generalized muscle twitching. Although cell-based assays did not demonstrate direct antigenicity, our findings point to Shaw-related subfamily of the pot…

Central Nervous SystemMale0301 basic medicineAntigenicityDatabases FactualThymomaImmunoprecipitationKCTD7Cell Adhesion Molecules NeuronalImmunologyNerve Tissue ProteinsBiologyNeuroblastoma03 medical and health sciences0302 clinical medicineAntigenCell Line TumorNeuroblastomaOpsoclonus myoclonus syndromemedicineAnimalsHumansImmunology and AllergyRats WistarChildOpsoclonus-Myoclonus SyndromeBrain NeoplasmsMembrane ProteinsNuclear ProteinsImmunogold labellingmedicine.diseaseMolecular biologyRatsHEK293 Cells030104 developmental biologyShaw Potassium ChannelsNeurologyMembrane proteinEncephalitisFemaleNeurology (clinical)030217 neurology & neurosurgerySynaptosomesJournal of Neuroimmunology
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Complex Ground-State and Excitation Energies in Coupled-Cluster Theory

2021

Since in coupled-cluster (CC) theory ground-state and excitation energies are eigenvalues of a non-Hermitian matrix, these energies can in principle take on complex values. In this paper we discuss the appearance of complex energy values in CC calculations from a mathematical perspective. We analyze the behaviour of the eigenvalues of Hermitian matrices that are perturbed (in a non-Hermitian manner) by a real parameter. Based on these results we show that for CC calculations with real-valued Hamiltonian matrices the ground-state energy generally takes a real value. Furthermore, we show that in the case of real-valued Hamiltonian matrices complex excitation energies only occur in the context…

Chemical Physics (physics.chem-ph)PhysicsBiophysicsFOS: Physical sciencesCondensed Matter PhysicsMolecular physicsMatrix (mathematics)Coupled clusterPhysics - Chemical PhysicsPhysical and Theoretical ChemistryGround stateMolecular BiologyComputer Science::DatabasesEigenvalues and eigenvectorsExcitation
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Effects of seniority, gender and geography on the bibliometric output and collaboration networks of European Research Council (ERC) grant recipients.

2019

Assessing the success and performance of researchers is a difficult task, as their grant output is influenced by a series of factors, including seniority, gender and geographical location of their host institution. In order to assess the effects of these factors, we analysed the publication and citation outputs, using Scopus and Web of Science, and the collaboration networks of European Research Council (ERC) starting (junior) and advanced (senior) grantees. For this study, we used a cohort of 355 grantees from the Life Sciences domain of years 2007-09. While senior grantees had overall greater publication output, junior grantees had a significantly greater pre-post grant award increase in …

Citation analysis ; research grants: peer reviewComputer and Information SciencesBiomedical ResearchDatabases FactualScience PolicyPeer ReviewScienceScopusResearch GrantsBibliometricsResearch and Analysis Methods050905 science studiesResearch FundingDatabase and Informatics MethodsCitation analysis0502 economics and businessCentralityHumansSeniorityDatabase SearchingLocationPublishingMedical educationMultidisciplinarybusiness.industryEuropean researchFinancing Organized05 social sciencesQRGender IdentityResearch AssessmentAuthorshipEuropeBibliometricsPublishingCitation AnalysisMedicine0509 other social sciencesbusinessCitationNetwork Analysis050203 business & managementResearch ArticlePLoS ONE
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The arithmetic decomposition of central Cantor sets

2018

Abstract Every central Cantor set of positive Lebesgue measure is the arithmetic sum of two central Cantor sets of Lebesgue measure zero. Under some mild condition this result can be strengthened by stating that the summands can be chosen to be C s regular if the initial set is of this class.

Class (set theory)Mathematics::Dynamical SystemsLebesgue measureApplied Mathematics010102 general mathematicsZero (complex analysis)Analysi02 engineering and technology01 natural sciencesCentral Cantor setCantor setCombinatoricsSet (abstract data type)Arithmetic progression0202 electrical engineering electronic engineering information engineeringDecomposition (computer science)Palis hypothesiArithmetic decomposition020201 artificial intelligence & image processing0101 mathematicsComputer Science::DatabasesAnalysisMathematicsJournal of Mathematical Analysis and Applications
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Age and Semantic Inhibition Measured by the Hayling Task: A Meta-Analysis.

2016

Objective Cognitive aging is commonly associated with a decrease in executive functioning (EF). A specific component of EF, semantic inhibition, is addressed in the present study, which presents a meta-analytic review of the literature that has evaluated the performance on the Hayling Sentence Completion test in young and older groups of individuals in order to assess the magnitude of the age effect. Method A systematic search involving Web of Science, PsyINFO, PsychARTICLE, and MedLine databases and Google Scholar was performed. A total of 11 studies were included in this meta-analysis, encompassing a total of 887 participants; 440 young and 447 older adults. The effect sizes for group dif…

Cognitive agingmedicine.medical_specialtyAgingMEDLINEAudiologyNeuropsychological Tests050105 experimental psychologySentence completion testsTask (project management)03 medical and health sciences0302 clinical medicinemedicineHumans0501 psychology and cognitive sciences05 social sciencesContrast (statistics)General MedicineDatabases BibliographicTest (assessment)SemanticsPsychiatry and Mental healthClinical PsychologyHayling testMeta-analysisInhibition PsychologicalNeuropsychology and Physiological PsychologyHayling taskMeta-analysisPsychology030217 neurology & neurosurgeryCognitive psychologyArchives of clinical neuropsychology : the official journal of the National Academy of Neuropsychologists
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Smart Phone, Smart Science: How the Use of Smartphones Can Revolutionize Research in Cognitive Science

2011

WOS:000295936900019; International audience; Investigating human cognitive faculties such as language, attention, and memory most often relies on testing small and homogeneous groups of volunteers coming to research facilities where they are asked to participate in behavioral experiments. We show that this limitation and sampling bias can be overcome by using smartphone technology to collect data in cognitive science experiments from thousands of subjects from all over the world. This mass coordinated use of smartphones creates a novel and powerful scientific "instrument" that yields the data necessary to test universal theories of cognition. This increase in power represents a potential re…

Cognitive scienceSocial and Behavioral SciencesPsycholinguistics[SCCO]Cognitive scienceCognitionEngineering0302 clinical medicineSoftwareSoftware DesignPsychologyMedicineAttentionComputingMilieux_MISCELLANEOUSLanguageCognitive scienceFaculty of Science\PsychologyLEXICAL DECISION TASKMultidisciplinaryPsycholinguisticsQ05 social sciencesRExperimental psychologySoftware EngineeringCognitionDIFFUSION-MODEL ACCOUNTExperimental economicsTest (assessment)SemanticsResearch facilitiesMental HealthComputers Handheld[SCCO.PSYC]Cognitive science/PsychologyMedicineInformation TechnologyResearch ArticleExperimental psychologyScienceCognitive NeuroscienceCell phonesSemantics050105 experimental psychologyDatabases03 medical and health sciencesMemoryHumans0501 psychology and cognitive sciencesChemistry (relationship)BiologyBehaviorbusiness.industryResearchCognitive PsychologyBiology and Life SciencesReproducibility of ResultsComputer ScienceAttention (Behavior)businessCell PhoneSoftware030217 neurology & neurosurgeryNeuroscience
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FlyMove – a new way to look at development of Drosophila

2003

Development of any organism requires a complex interplay of genes to orchestrate the many movements needed to build up an embryo. Previously, work on Drosophila melanogaster has provided important insights that are often applicable in other systems. But developmental processes, which take place in space and time, are difficult to convey in textbooks. Here, we introduce FlyMove (http://flymove.uni-muenster.de), a new database combining movies, animated schemata, interactive "modules" and pictures that will greatly facilitate the understanding of Drosophila development.

Cognitive scienceanimal structuresDatabases FactualbiologyComputational BiologyGenes Insectbiology.organism_classificationBioinformaticsDrosophila melanogasterComputingMethodologies_PATTERNRECOGNITIONDevelopment (topology)Gene Expression RegulationMorphogenesisGeneticsAnimalsComputer SimulationFemaleDrosophila melanogasterDrosophilaOrganismTrends in Genetics
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Character restrictions and multiplicities in symmetric groups

2017

Abstract We give natural correspondences of odd-degree characters of the symmetric groups and some of their subgroups, which can be described easily by restriction of characters, degrees and multiplicities.

CombinatoricsAlgebra and Number TheoryCharacter (mathematics)Symmetric group010102 general mathematics0103 physical sciences010307 mathematical physics0101 mathematics01 natural sciencesComputer Science::DatabasesMathematicsJournal of Algebra
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Quantum Queries on Permutations with a Promise

2009

This paper studies quantum query complexities for deciding (exactly or with probability 1.0) the parity of permutations of n numbers, 0 through n *** 1. Our results show quantum mechanism is quite strong for this non-Boolean problem as it is for several Boolean problems: (i) For n = 3, we need a single query in the quantum case whereas we obviously need two queries deterministically. (ii) For even n , n /2 quantum queries are sufficient whereas we need n *** 1 queries deterministically. (iii) Our third result is for the problem deciding whether the given permutation is the identical one. For this problem, we show that there is a nontrivial promise such that if we impose that promise to the …

CombinatoricsDiscrete mathematicsQuantum queryPermutationQuantum algorithmParity (physics)Boolean functionQuantumComputer Science::DatabasesMathematics
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