Search results for "Dimensionality Reduction"
showing 10 items of 120 documents
Principal polynomial analysis for remote sensing data processing
2011
Inspired by the concept of Principal Curves, in this paper, we define Principal Polynomials as a non-linear generalization of Principal Components to overcome the conditional mean independence restriction of PCA. Principal Polynomials deform the straight Principal Components by minimizing the regression error (or variance) in the corresponding orthogonal subspaces. We propose to use a projection on a series of these polynomials to set a new nonlinear data representation: the Principal Polynomial Analysis (PPA). We prove that the dimensionality reduction error in PPA is always lower than in PCA. Lower truncation error and increased independence suggest that unsupervised PPA features can be b…
Multivariate denoising methods combining wavelets and principal component analysis for mass spectrometry data
2010
The identification of new diagnostic or prognostic biomarkers is one of the main aims of clinical cancer research. In recent years, there has been a growing interest in using mass spectrometry for the detection of such biomarkers. The MS signal resulting from MALDI-TOF measurements is contaminated by different sources of technical variations that can be removed by a prior pre-processing step. In particular, denoising makes it possible to remove the random noise contained in the signal. Wavelet methodology associated with thresholding is usually used for this purpose. In this study, we adapted two multivariate denoising methods that combine wavelets and PCA to MS data. The objective was to o…
Comparison of classification methods that combine clinical data and high-dimensional mass spectrometry data
2013
Background The identification of new diagnostic or prognostic biomarkers is one of the main aims of clinical cancer research. Technologies like mass spectrometry are commonly being used in proteomic research. Mass spectrometry signals show the proteomic profiles of the individuals under study at a given time. These profiles correspond to the recording of a large number of proteins, much larger than the number of individuals. These variables come in addition to or to complete classical clinical variables. The objective of this study is to evaluate and compare the predictive ability of new and existing models combining mass spectrometry data and classical clinical variables. This study was co…
Snowball ICA: A Model Order Free Independent Component Analysis Strategy for Functional Magnetic Resonance Imaging Data
2020
In independent component analysis (ICA), the selection of model order (i.e., number of components to be extracted) has crucial effects on functional magnetic resonance imaging (fMRI) brain network analysis. Model order selection (MOS) algorithms have been used to determine the number of estimated components. However, simulations show that even when the model order equals the number of simulated signal sources, traditional ICA algorithms may misestimate the spatial maps of the signal sources. In principle, increasing model order will consider more potential information in the estimation, and should therefore produce more accurate results. However, this strategy may not work for fMRI because …
Hierarchies of Self-Organizing Maps for action recognition
2016
We propose a hierarchical neural architecture able to recognise observed human actions. Each layer in the architecture represents increasingly complex human activity features. The first layer consists of a SOM which performs dimensionality reduction and clustering of the feature space. It represents the dynamics of the stream of posture frames in action sequences as activity trajectories over time. The second layer in the hierarchy consists of another SOM which clusters the activity trajectories of the first-layer SOM and learns to represent action prototypes. The third - and last - layer of the hierarchy consists of a neural network that learns to label action prototypes of the second-laye…
Tree Structured Self-Organizing Maps
1999
Publisher Summary This chapter provides an overview of the tree structured self-organizing maps (TS-SOM). It was originally intended as a fast implementation of the self-organizing map (SOM). The chapter explains that TS-SOM is a constructive smoother for a class of dimension reduction problems. There is a well known relation between self-organizing maps and principal curves. Unfortunately in most presentations it is derived by simple reasoning, avoiding the mathematical statement of the problem, which is essential to understand how efficient SOM implementations can be constructed. In this chapter, SOM is derived as a numerical solution of a generic model in a continuous domain, which diffe…
Multi-temporal and Multi-source Remote Sensing Image Classification by Nonlinear Relative Normalization
2016
Remote sensing image classification exploiting multiple sensors is a very challenging problem: data from different modalities are affected by spectral distortions and mis-alignments of all kinds, and this hampers re-using models built for one image to be used successfully in other scenes. In order to adapt and transfer models across image acquisitions, one must be able to cope with datasets that are not co-registered, acquired under different illumination and atmospheric conditions, by different sensors, and with scarce ground references. Traditionally, methods based on histogram matching have been used. However, they fail when densities have very different shapes or when there is no corres…
Spatial noise-aware temperature retrieval from infrared sounder data
2020
In this paper we present a combined strategy for the retrieval of atmospheric profiles from infrared sounders. The approach considers the spatial information and a noise-dependent dimensionality reduction approach. The extracted features are fed into a canonical linear regression. We compare Principal Component Analysis (PCA) and Minimum Noise Fraction (MNF) for dimensionality reduction, and study the compactness and information content of the extracted features. Assessment of the results is done on a big dataset covering many spatial and temporal situations. PCA is widely used for these purposes but our analysis shows that one can gain significant improvements of the error rates when using…
An Online Metric Learning Approach through Margin Maximization
2011
This work introduces a method based on learning similarity measures between pairs of objects in any representation space that allows to develop convenient recognition algorithms. The problem is formulated through margin maximization over distance values so that it can discriminate between similar (intra-class) and dissimilar (inter-class) elements without enforcing positive definiteness of the metric matrix as in most competing approaches. A passive-aggressive approach has been adopted to carry out the corresponding optimization procedure. The proposed approach has been empirically compared to state of the art metric learning on several publicly available databases showing its potential bot…
Salient Pixels and Dimensionality Reduction for Display of Multi/Hyperspectral Images
2012
International audience; Dimensionality Reduction (DR) of spectral images is a common approach to different purposes such as visualization, noise removal or compression. Most methods such as PCA or band selection use either the entire population of pixels or a uniformly sampled subset in order to compute a projection matrix. By doing so, spatial information is not accurately handled and all the objects contained in the scene are given the same emphasis. Nonetheless, it is possible to focus the DR on the separation of specific Objects of Interest (OoI), simply by neglecting all the others. In PCA for instance, instead of using the variance of the scene in each spectral channel, we show that i…