Search results for "Dye"

showing 10 items of 577 documents

Interaction ofEscherichia colihemolysin with biological membranes

2001

Escherichia coli hemolysin (HlyA) is a membrane-permeabilizing protein belonging to the family of RTX-toxins. Lytic activity depends on binding of Ca2(+) to the C-terminus of the molecule. The N-terminus of HlyA harbors hydrophobic sequences that are believed to constitute the membrane-inserting domain. In this study, 13 HlyA cysteine-replacement mutants were constructed and labeled with the polarity-sensitive fluorescent probe 6-bromoacetyl-2-dimethylaminonaphthalene (badan). The fluorescence emission of the label was examined in soluble and membrane-bound toxin. Binding effected a major blue shift in the emission of six residues within the N-terminal hydrophobic domain, indicating inserti…

Conformational changeProtein ConformationPlasma protein bindingBiologymedicine.disease_causeHemolysisBiochemistryHemolysin ProteinsProtein structureBacterial Proteins2-NaphthylamineEscherichia colimedicineCysteineCloning MolecularLipid bilayerEscherichia coliFluorescent DyesEscherichia coli ProteinsCell MembraneErythrocyte MembraneBiological membraneProtein Structure TertiarySpectrometry FluorescenceMembraneBiochemistryMutagenesisLiposomesChromatography GelCalciumElectrophoresis Polyacrylamide GelProtein BindingBinding domainEuropean Journal of Biochemistry
researchProduct

Molecular architecture of a toxin pore: a 15-residue sequence lines the transmembrane channel of staphylococcal alpha-toxin.

1996

Staphylococcus aureus alpha-toxin is a hydrophilic polypeptide of 293 amino acids that produces heptameric transmembrane pores. During assembly, the formation of a pre-pore precedes membrane permeabilization; the latter is linked to a conformational change in the oligomer. Here, 41 single-cysteine replacement toxin mutants were thiol-specifically labelled with the polarity-sensitive fluorescent probe acrylodan. After oligomerization on membranes, only the mutants with acrylodan attached to residues in the sequence 118-140 exhibited a marked blue shift in the fluorescence emission maximum, indicative of movement of the fluorophore to a hydrophobic environment. Within this region, two functio…

Conformational changeStaphylococcus aureusProtein ConformationMembrane lipidsBacterial ToxinsMolecular Sequence DataBiologyGeneral Biochemistry Genetics and Molecular BiologyCell membraneHemolysin ProteinsProtein structure2-NaphthylaminemedicinePoint MutationAmino Acid SequenceCysteineMolecular BiologyPeptide sequenceFluorescent Dyeschemistry.chemical_classificationBinding SitesGeneral Immunology and MicrobiologyMolecular StructureGeneral NeuroscienceCell MembraneTransmembrane proteinAmino acidmedicine.anatomical_structureMembraneSpectrometry FluorescenceBiochemistrychemistryLiposomesBiophysicsMutagenesis Site-DirectedResearch ArticleThe EMBO journal
researchProduct

Assessment of Arundo donax Fibers for Oil Spill Recovery Applications

2019

In the last years, natural fibers are increasingly investigated as an oil recovery system in order to overcome the oil spillage phenomena, thus preserving environment and aquatic life. In particular, lignocellulose-based fibers have recently been employed with promising results. In such a context, the aim of this paper is to assess the oil sorption capability of natural fibers extracted from the stem of the giant reed Arundo donax L., a perennial rhizomatous grass belonging to the Poaceae family that grows naturally all around the world thanks to its ability to tolerate different climatic conditions. Sorption tests in several pollutants and water as a reference were carried out. The fibers …

Context (language use)02 engineering and technology<i>Arundo donax</i>010501 environmental sciences01 natural sciencesArundo donaxBiomaterialsAdsorptionnatural fiberslcsh:TP890-933lcsh:TP200-248morphologyPoaceaelcsh:QH301-705.50105 earth and related environmental sciencesCivil and Structural EngineeringPollutantoil recoverybiologyAquatic ecosystemArundo donaxSorptionlcsh:Chemicals: Manufacture use etc.021001 nanoscience & nanotechnologyPulp and paper industrybiology.organism_classificationNatural fibernatural fibers; Arundo donax; oil recovery; sorption capacity; morphologylcsh:QC1-999sorption capacitylcsh:Biology (General)Mechanics of MaterialsOil spillCeramics and CompositesEnvironmental sciencelcsh:Textile bleaching dyeing printing etc.0210 nano-technologylcsh:PhysicsFibers
researchProduct

Trace detection of plutonium by three-step photoionization with a laser system pumped by a copper vapor laser

1985

Laser photoionization has been used to detect trace amounts of plutonium. A high sensitivity and selectivity has been achieved by applying three-step excitation and ionization of the plutonium atoms with high pulse-repetition rates and additional mass determination by time-of-flight measurements. A laser system was developed which consists of a copper vapor laser pumping three dye lasers simultaneously. Samples containing between 1010 and 1012 atoms of239Pu on Re filaments were measured yielding strong resonance signals with maximum ion count rates of several kHz at a vanishingly low background. A detection efficiency of 10−7 was determined allowing the detection of about 108 plutonium atom…

Copper vapor laserDye laserMaterials sciencePhysics and Astronomy (miscellaneous)General EngineeringPhotoionization modeGeneral Physics and Astronomychemistry.chemical_elementPhotoionizationLaserlaw.inventionPlutoniumchemistrylawIonizationPhysics::Atomic PhysicsAtomic physicsAtomic vapor laser isotope separationApplied Physics B Photophysics and Laser Chemistry
researchProduct

Dye-tracer technique for rill flows by velocity profile measurements

2020

Abstract Water flow on hillslope soil surface supplies energy which is required to detach soil particles, to transport and deposit sediments, therefore flow velocity is a key variable related to hillslope hydrodinamics of soil erosion processes. Among the different methods available for measuring velocity of shallow interrill and rill flow, the trace technique is widely used. Trace technique is applied by adding a material (salt, magnetic material, water isotope, floating object) and then measuring the speed of the material to travel a known distance from the injection point. When flow velocity is measured using a dye-tracing method, the mean velocity is calculated by multiplying the measur…

Correction factorDye method010504 meteorology & atmospheric sciencesWater flowFlow (psychology)Surface finish01 natural sciencesPhysics::GeophysicsPhysics::Fluid DynamicsFlow velocitySettore AGR/08 - Idraulica Agraria E Sistemazioni Idraulico-Forestali0105 earth and related environmental sciencesEarth-Surface Processesgeographygeography.geographical_feature_categorySediment04 agricultural and veterinary sciencesMechanicsPlumeRillFlumeFlow velocityRill flowSoil erosion040103 agronomy & agriculture0401 agriculture forestry and fisheriesInterrill flowGeologyCATENA
researchProduct

Flume experiments for assessing the dye-tracing technique in rill flows

2021

Abstract Flow velocity controls hillslope soil erosion and is a key hydrodynamic variable involved in sediment transport and deposition processes. The dye-tracer technique is one of the most applied methods for measuring velocity of shallow interrill and rill flow. The technique is based on the injection of a tracer in a specific point and the measurement of its speed to travel the known distance from the injection point to a given channel section. The dye-tracer technique requires that the measured surface flow velocity has to be corrected to obtain the mean flow velocity using a correction factor which is generally empirically deduced. The technique has two sources of uncertainties: i) th…

Correction factorDye methodFlow (psychology)0207 environmental engineering02 engineering and technology01 natural sciences010309 opticssymbols.namesakeFlow velocity0103 physical sciencesFroude numberSettore AGR/08 - Idraulica Agraria E Sistemazioni Idraulico-ForestaliElectrical and Electronic Engineering020701 environmental engineeringInstrumentationgeographygeography.geographical_feature_categoryDye tracingReynolds numberMechanicsComputer Science ApplicationsFlumeRillFlow conditionsFlow velocityModeling and SimulationRill flowSoil erosionsymbolsInterrill flowGeologyFlow Measurement and Instrumentation
researchProduct

Amphiphilic poly(hydroxyethylaspartamide) derivative-based micelles as drug delivery systems for ferulic acid

2008

Self-assembling micelles, potentially useful as drug delivery systems for ferulic acid (FA), were obtained in aqueous media from amphiphilic alpha,beta-poly(N-2-hydroxyethyl)-dl-aspartamide (PHEA) copolymers bearing at the polyamino acidic backbone both poly(ethyleneglycol) (2000 or 5000 Da) and hexadecylamine (C(16)) moieties, at a concentration of 7 x 10(- 3) and 4 x 10(- 3) g/l, respectively, with nanometre size and negative zeta potential. These micelles were able to entrap FA and to release it in a prolonged way in phosphate buffer solution at pH 7.4 and human plasma. These systems were also stable in storage conditions and have no cytotoxic effects on Caco-2, 16 HBE, HuDe and K562 cel…

Coumaric AcidsAction PotentialsPharmaceutical ScienceBuffersCoumaric acidMicelleFerulic acidMicechemistry.chemical_compoundDrug Delivery SystemsPhagocytosisamphiphilic copolymers micelles ferulic acidPolymer chemistryAmphiphileZeta potentialCopolymerAnimalsHumansTechnology PharmaceuticalOrganic chemistryMicellespolymeric micellesFluorescent DyesAmphiphilic copolymersalphabeta-poly(N-2-hydroxyethyl)-DL-aspartamidePlant ExtractsRhodaminesMacrophagesHydrogen-Ion ConcentrationchemistrySettore CHIM/09 - Farmaceutico Tecnologico ApplicativoDrug deliveryPEGylationCaco-2 CellsK562 CellsPeptidesRhodamine B baseferulic acidJournal of Drug Targeting
researchProduct

Frequency conversion of propagating surface plasmon polaritons by organic molecules

2008

We demonstrate frequency conversion of surface plasmon polaritons (SPP) by utilizing the coupling between organic dye molecules and SPP. Launching of SPPs into a plasmonic waveguide is done in two ways: by optically excited molecules and by quantum dots (QDs). QDs are demonstrated to overcome the major problem of bleaching occurring with molecules. The SPP propagates tens of micrometers and clear frequency conversion is observed in the SPP spectrum after passing an area of converter molecules. The use of molecules and QDs as elements of all-plasmonic devices has the potential for high integration and use of self-assembly in fabrication. Peer reviewed

CouplingFabricationMaterials sciencePhysics and Astronomy (miscellaneous)business.industryoptical frequency conversionsurface plasmonsSurface plasmontechnology industry and agriculturePhysics::Opticsequipment and suppliesoptical waveguidesCondensed Matter::Mesoscopic Systems and Quantum Hall EffectdyesSurface plasmon polaritonintegrated opticsQuantum dotExcited statePolaritonMoleculeOptoelectronicsPhysics::Chemical Physicsbusinessoptical saturable absorptionpolaritonsApplied Physics Letters
researchProduct

Intracellular pH-dependent efflux of the fluorescent probe pyranine in the yeast Yarrowia lipolytica.

2001

International audience; 8-Hydroxypyrene-1,3,6-trisulfonic acid (pyranine) can be used as a vital intracellular pH (pH(i)) indicator. In the yeast Yarrowia lipolytica, a partial efflux of the probe was detected by using the pH-independent wavelength of 415 nm. A simplified correction of the fluorescent signals was applied, enabling to show for this species a good near-neutral pH(i) maintenance capacity in a pH 3.9 medium. Octanoic acid, which is known to have toxic effects on yeast, decreased the pH(i) and increased the 260-nm-absorbing compounds leakage. However, this acid inhibited the fluorescent probe efflux linearly with its concentration suggesting a pH(i)-dependent efflux of pyranine …

CytoplasmMESH: Hydrogen-Ion ConcentrationCell Membrane Permeability[SDV.BIO]Life Sciences [q-bio]/BiotechnologyOctanoic Acidschemistry.chemical_compoundMESH : Fluorescent DyesMESH: Cell Membrane PermeabilityArylsulfonates[INFO.INFO-BT]Computer Science [cs]/BiotechnologyMESH: ArylsulfonatesMESH : Octanoic AcidsbiologyCaprylic acidHydrogen-Ion ConcentrationMESH: Fluorescent DyesFluorescenceBiochemistryEffluxCaprylates[ INFO.INFO-BT ] Computer Science [cs]/BiotechnologyIntracellularMESH : CytoplasmIntracellular pHMESH: Biological Transport[SDV.BC]Life Sciences [q-bio]/Cellular BiologyMicrobiologyPyranineMESH : ArylsulfonatesMESH : Hydrogen-Ion ConcentrationGeneticsMESH: SaccharomycetalesMolecular Biology[SDV.BC] Life Sciences [q-bio]/Cellular BiologyFluorescent Dyes[ SDV.BC ] Life Sciences [q-bio]/Cellular BiologyMESH: Cytoplasm[ SDV.BIO ] Life Sciences [q-bio]/BiotechnologyYarrowiaBiological TransportMESH : Saccharomycetalesbiology.organism_classificationMESH: Octanoic AcidsYeast[SDV.BIO] Life Sciences [q-bio]/BiotechnologyMESH : Biological Transport[INFO.INFO-BT] Computer Science [cs]/BiotechnologychemistryMESH : Cell Membrane PermeabilitySaccharomycetales
researchProduct

Lovastatin protects human endothelial cells from the genotoxic and cytotoxic effects of the anticancer drugs doxorubicin and etoposide

2006

Background and purpose: 3-Hydroxy-3-methylglutaryl-coenzyme A (HMG-CoA) reductase inhibitors (statins) are frequently used lipid-lowering drugs. Moreover, they exert pleiotropic effects on cellular stress responses and death. Here, we analysed whether lovastatin affects the sensitivity of primary human endothelial cells (HUVEC) to the anticancer drug doxorubicin. Experimental approach: We investigated whether pretreatment of HUVEC with low dose of lovastatin influences the cellular sensitivity to doxorubicin. To this end, cell viability, proliferation and apoptosis as well as DNA damage-triggered stress response were analysed. Key results: Lovastatin reduced the cytotoxic potency of doxorub…

DNA ReplicationCell SurvivalDNA damageApoptosisBiologyPharmacologypolycyclic compoundsmedicineHumansTopoisomerase II InhibitorsDoxorubicinLovastatinEtoposideEtoposideFluorescent DyesPharmacologyAntibiotics AntineoplasticReverse Transcriptase Polymerase Chain ReactionTopoisomeraseCell CycleEndothelial Cellsnutritional and metabolic diseasesAntimutagenic AgentsFibroblastsCell cycleResearch PapersAntineoplastic Agents PhytogenicDoxorubicinDrug Resistance NeoplasmHMG-CoA reductasebiology.proteinlipids (amino acids peptides and proteins)LovastatinHydroxymethylglutaryl-CoA Reductase InhibitorsTopoisomerase-II InhibitorReactive Oxygen SpeciesFluorescein-5-isothiocyanateDNA Damagemedicine.drugBritish Journal of Pharmacology
researchProduct