Search results for "EAG"
showing 10 items of 1379 documents
The gypsy database (GyDB) of mobile genetic elements: release 2.0
2011
This article introduces the second release of the Gypsy Database of Mobile Genetic Elements (GyDB 2.0): a research project devoted to the evolutionary dynamics of viruses and transposable elements based on their phylogenetic classification (per lineage and protein domain). The Gypsy Database (GyDB) is a long-term project that is continuously progressing, and that owing to the high molecular diversity of mobile elements requires to be completed in several stages. GyDB 2.0 has been powered with a wiki to allow other researchers participate in the project. The current database stage and scope are long terminal repeats (LTR) retroelements and relatives. GyDB 2.0 is an update based on the analys…
Fibre extraction from oleaginous flax for technical textile applications: influence of pre-processing parameters on fibre extraction yield, size dist…
2017
International audience; Cultivated primarily for its seeds, oleaginous flax could also be valued for the different fractions that can be extracted from the straw. However, as the straws are not harvested with the same technique and care than for the textile flax, the classical scutching technique cannot be used. As a consequence, an “all fibre” device was used to perform the separation of the different constituents of the oleaginous flax straws. The different fractions were quantified for two retting levels and for two degrees of rewetting of the stems. The physical and mechanical properties of fibres were then evaluated. It appears that the relative amount of fibres extracted from oleagino…
Small-scale patches of detritus as habitat for invertebrates within a Zostera noltei meadow
2021
Abstract Seagrass detritus can attract numerous invertebrates as it provides food and substrate within the meadow or in adjacent environments. Nonetheless, several factors could modify the invertebrate response to this habitat. In this study, we tested if epifaunal colonisation of Zostera noltei detritus was related to substrate availability rather than food and whether colonising assemblages were similar according to the meadow structural complexity. Litterbags filled with natural or artificial detritus were deployed within an eelgrass meadow in a Mediterranean coastal lagoon (Thau lagoon, France). Colonisation appeared to be driven by the presence of detritus, with similar assemblages in …
Seaweed fails to prevent ocean acidification impact on foraminifera along a shallow-water CO2 gradient
2014
Ocean acidification causes biodiversity loss, alters ecosystems, and may impact food security, as shells of small organisms dissolve easily in corrosive waters. There is a suggestion that photosynthetic organisms could mitigate ocean acidification on a local scale, through seagrass protection or seaweed cultivation, as net ecosystem organic production raises the saturation state of calcium carbonate making seawater less corrosive. Here, we used a natural gradient in calcium carbonate saturation, caused by shallow-water CO2 seeps in the Mediterranean Sea, to assess whether seaweed that is resistant to acidification (Padina pavonica) could prevent adverse effects of acidification on epiphytic…
Small-scale variability in geomorphological settings influences mangrove-derived organic matter export in a tropical bay
2017
Abstract. Organic matter (OM) exchanges between adjacent habitats affect the dynamics and functioning of coastal systems, as well as the role of the different primary producers as energy and nutrient sources in food webs. Elemental (C, N, C : N) and isotope (δ13C) signatures and fatty acid (FA) profiles were used to assess the influence of geomorphological setting in two climatic seasons on the export and fate of mangrove OM across a tidally influenced tropical area, Gazi Bay (Kenya). The main results indicate that tidal transport, along with riverine runoff, plays a significant role in the distribution of mangrove organic matter. In particular, a marked spatial variability in the export of…
Fish assemblages cope with ocean acidification in a shallow volcanic CO2 vent benefiting from an adjacent recovery area
2020
Shallow CO2 vents are used to test ecological hypotheses about the effects of ocean acidification (OA). Here, we studied fish assemblages associated with Cymodocea nodosa meadows exposed to high pCO2/low pH conditions at a natural CO2 vent in the Mediterranean Sea. Using underwater visual census, we assessed fish community structure and biodiversity in a low pH site (close to the CO2 vent), a close control site and a far control site, hypothesising a decline in biodiversity and a homogenization of fish assemblages under OA conditions. Our findings revealed that fish diversity did not show a unique spatial pattern, or even significant relationships with pH, but correlated with seagrass leaf …
Effectiveness of Posidonia oceanica biotic indices for assessing the ecological status of coastal waters in the Saronikos Gulf (Aegean Sea, Eastern M…
2017
Biotic indices are considered key assessment tools in most national and European policies aimed at improving the quality of coastal waters. At present, several Water Framework Directive (WFD)-compliant biotic indices based on the marine angiosperm Posidonia oceanica have been developed and applied in the Mediterranean Sea. In this study, we investigated the effectiveness of four different P. oceanica indices (POMI, PREI, Valencian CS, and BiPo) in evaluating the ecological status of coastal waters in a case study area of Greece. The evaluation, comparison, and validation of the Ecological Status Class (ESC) assessments obtained by each index were based on a set of eight common sites that en…
Long-term effects of elevated CO2 on the population dynamics of the seagrass Cymodocea nodosa: Evidence from volcanic seeps
2021
Population reconstruction techniques was used to assess for the first time the population dynamics of a seagrass, Cymodocea nodosa, exposed to long-term elevated CO2 near three volcanic seeps and compared them with reference sites away from the seeps. Under high CO2, the density of shoots and of individuals (apical shoots), and the vertical and horizontal elongation and production rates, were higher than at the reference sites. Nitrogen limitation effects on rhizome elongation and production rates and on biomass were more evident than CO2 as these were highest at the location where the limitation of nitrogen was highest. At the seep where the availability of CO2 was highest and nitrogen low…
Preferential assimilation of seagrass detritus by two coexisting Mediterranean sea cucumbers: Holothuria polii and Holothuria tubulosa
2019
Abstract Holothuria polii and Holothuria tubulosa are two of the most commercially exploited sea cucumbers of the Mediterranean Sea. As deposit-feeders, they represent an important component of the benthic community. Hence, knowledge of their feeding behaviour is crucial for understanding their function in terms of benthic ecology and sediment dynamics. Using information obtained from stable isotope analysis, the food selectivity/assimilation, temporal variations in diet and trophic niche of H. polii and H. tubulosa were investigated. Analysis of carbon and nitrogen isotopic ratios in body wall tissue showed a preferential assimilation of seagrass detritus among multiple food sources, with …
Resistance of seagrass habitats to ocean acidification via altered interactions in a tri-trophic chain
2020
Despite the wide knowledge about prevalent effects of ocean acidification on single species, the consequences on species interactions that may promote or prevent habitat shifts are still poorly understood. Using natural CO2 vents, we investigated changes in a key tri-trophic chain embedded within all its natural complexity in seagrass systems. We found that seagrass habitats remain stable at vents despite the changes in their tri-trophic components. Under high pCO2, the feeding of a key herbivore (sea urchin) on a less palatable seagrass and its associated epiphytes decreased, whereas the feeding on higher-palatable green algae increased. We also observed a doubled density of a predatory wr…