Search results for "ELS"

showing 10 items of 12690 documents

A Network Model for the Correlation between Epistasis and Genomic Complexity

2008

The study of genetic interactions (epistasis) is central to the understanding of genome organization and evolution. A general correlation between epistasis and genomic complexity has been recently shown, such that in simpler genomes epistasis is antagonistic on average (mutational effects tend to cancel each other out), whereas a transition towards synergistic epistasis occurs in more complex genomes (mutational effects strengthen each other). Here, we use a simple network model to identify basic features explaining this correlation. We show that, in small networks with multifunctional nodes, lack of redundancy, and absence of alternative pathways, epistasis is antagonistic on average. In c…

0106 biological sciencesSilent mutationGenome evolutionDNA Mutational Analysislcsh:MedicineBiology010603 evolutionary biology01 natural sciencesGenomeModels BiologicalCorrelation03 medical and health sciencesComputational Biology/Metabolic NetworksGenetics and Genomics/Population GeneticsAnimalsHumanslcsh:Science030304 developmental biologyGenomic organization0303 health sciencesEvolutionary BiologyMultidisciplinaryComputational Biology/Systems BiologyGenomeEvolutionary Biology/Evolutionary and Comparative GeneticsModels GeneticHuman evolutionary geneticsSystems Biologylcsh:RRobustness (evolution)Computational BiologyGenetics and GenomicsEpistasis GeneticGenomicsModels TheoreticalEvolutionary biologyMutationEpistasislcsh:QAlgorithmsResearch ArticlePLoS ONE
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Life-cycle switching and coexistence of species with no niche differentiation.

2011

The increasing evidence of coexistence of cryptic species with no recognized niche differentiation has called attention to mechanisms reducing competition that are not based on niche-differentiation. Only sex-based mechanisms have been shown to create the negative feedback needed for stable coexistence of competitors with completely overlapping niches. Here we show that density-dependent sexual and diapause investment can mediate coexistence of facultative sexual species having identical niches. We modelled the dynamics of two competing cyclical parthenogens with species-specific density-dependent sexual and diapause investment and either equal or different competitive abilities. We show th…

0106 biological sciencesSpecies complexEcological Metricsmedia_common.quotation_subjectlcsh:MedicineMarine and Aquatic SciencesMarine BiologyDiapauseBiology010603 evolutionary biology01 natural sciencesCompetition (biology)Sexual Behavior AnimalTheoretical EcologyAnimalslcsh:ScienceBiologymedia_commonCoexistence theoryEcological nicheFreshwater EcologyFacultativeMultidisciplinaryEcologyPopulation BiologyEcology010604 marine biology & hydrobiologylcsh:RNiche differentiationSpecies DiversityBiodiversityModels TheoreticalSexual reproductionSpecies InteractionsCommunity EcologyEarth Scienceslcsh:QPopulation EcologyResearch ArticlePloS one
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Environmental Variability and Semelparity vs. Iteroparity as Life Histories

2002

Research on the evolution of life histories addresses the topic of fitness trade-offs between semelparity (reproducing once in a lifetime) and iteroparity (repeated reproductive bouts per lifetime). Bulmer (1994) derived the relationship v+P(A)<1 (P(A) is the adult survival;vb(S) and b(S) are the offspring numbers for iteroparous and semelparous breeding strategies, respectively), under which a resident semelparous population cannot be invaded by an iteroparous mutant when the underlying population dynamics are stable. We took Bulmer's population dynamics, and added noise in juvenile and adult survival and in offspring numbers. Long-term coexistence of the two strategies is possible in much…

0106 biological sciencesStatistics and ProbabilityOffspringPopulation DynamicsPopulationBiologyModels Biological010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyAnimalsJuvenileeducationSurvival rateEcosystemSemelparity and iteroparityeducation.field_of_studyGeneral Immunology and MicrobiologyReproductionApplied MathematicsGeneral MedicineBiological evolutionBiological EvolutionSurvival Rate010601 ecologyParityModeling and SimulationGeneral Agricultural and Biological SciencesDemographyJournal of Theoretical Biology
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Effects of patch number and dispersal patterns on population dynamics and synchrony.

2000

In this paper, we examine the effects of patch number and different dispersal patterns on dynamics of local populations and on the level of synchrony between them. Local population renewal is governed by the Ricker model and we also consider asymmetrical dispersal as well as the presence of environmental heterogeneity. Our results show that both population dynamics and the level of synchrony differ markedly between two and a larger number of local populations. For two patches different dispersal rules give very versatile dynamics. However, for a larger number of local populations the dynamics are similar irrespective of the dispersal rule. For example, for the parameter values yielding stab…

0106 biological sciencesStatistics and ProbabilityPopulationPopulation DynamicsBiology010603 evolutionary biology01 natural sciencesPopulation densityModels BiologicalGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesQuantitative Biology::Populations and EvolutionAnimalsLocal populationPopulation dynamicseducation030304 developmental biologyPopulation Density0303 health scienceseducation.field_of_studyGeneral Immunology and MicrobiologyEcologyApplied MathematicsHigh intensityDynamics (mechanics)General MedicineRicker modelModeling and SimulationBiological dispersalGeneral Agricultural and Biological SciencesJournal of theoretical biology
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Seed Bank in Annuals: Competition Between Banker and Non-banker Morphs

2002

Seed bank is a plant life history strategy against the unpredictability of the biotic and the abiotic environment. We simulated competition between a seed banking and a non-banking morph of an annual plant. A constant fraction of the banker morph seeds was allocated to the seed bank, where they had a constant mortality and germination rate. All surviving seeds of the non-banker morph germinated in the next generation. The seedlings of both morphs experienced similar density-dependent mortality. Whether one of the morphs wins or the morphs coexist was evaluated from parameter space plots and statistically with logistic regression analysis. All parameters of the model had a significant, nonli…

0106 biological sciencesStatistics and Probabilitygenetic structuresmedia_common.quotation_subjectComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISIONGerminationModel parametersBiologyModels Biological010603 evolutionary biology01 natural sciencesGeneralLiterature_MISCELLANEOUSGeneral Biochemistry Genetics and Molecular BiologyPlant lifeCompetition (biology)BotanyEcosystemBiological sciencesEcosystemreproductive and urinary physiologyComputingMethodologies_COMPUTERGRAPHICSmedia_commonAbiotic componentGeneral Immunology and MicrobiologyReproductionApplied MathematicsfungiGeneral Medicine15. Life on landhumanitiesLogistic ModelsAgronomyGerminationModeling and SimulationSeedsAnnual plantGeneral Agricultural and Biological Sciencespsychological phenomena and processes010606 plant biology & botanyJournal of Theoretical Biology
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Low fitness at low latitudes: Wintering in the tropics increases migratory delays and mortality rates in an Arctic breeding shorebird

2020

Publisher's version (útgefin grein)

0106 biological sciencesSurvivalBird migrationIcelandVaðfuglarBreedingmigration01 natural sciencesGhanaRECAPTURE MODELSFitnessSeasonal breedertimingSANDERLINGSMigrationArctic RegionsMortality rateMauritanianutrient storage strategiesNamibiaBIRD MIGRATIONfitnessEuropeCalidrisGeographySeasonsSolar geolocationResearch Articlefood.ingredientDIFFERENTIAL MIGRATIONSubtropics010603 evolutionary biologysurvivalLatitudefoodWESTERN SANDPIPERSAnimals14. Life underwaterTimingEcology Evolution Behavior and SystematicsDemographysolar geolocationCONSEQUENCES010604 marine biology & hydrobiologyLifun (náttúrufræði)Far dýraTropicsSANDPIPERS CALIDRIS-MAURIBODY-MASSNutrient storage strategiesLýðfræðiFisheryArcticPATTERNSAnimal Science and ZoologyAnimal Migrationsite fidelitySite fidelity
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Dispersal flight and colony development in the fungus-growing termites Pseudacanthotermes spiniger and P. militaris

2012

International audience; Pseudacanthotermes spiniger and P. militaris are two African fungus-growing termites (Termitidae, Macrotermitinae) which may become pests in disturbed agrosystems where they often live in sympatry. To study their development and their reproductive strategies, colonies of both species were reared in the laboratory for 20 and 17 years, respectively, after their foundation from reproductive pairs. The first steps of development were in great part similar in both species, although P. spiniger favoured the defence during the juvenile period, while P. militaris tended to favour a rapid development. While P. spiniger colonies did not produce alates until year 7 of colony li…

0106 biological sciencesSympatrymedia_common.quotation_subjectLife history Alate production Reproductive isolation Termite rearingAlateQUEENS010603 evolutionary biology01 natural sciencesTermite rearingULTRASTRUCTUREFAT-BODYLife historyEcology Evolution Behavior and Systematicsmedia_common[ SDE.BE ] Environmental Sciences/Biodiversity and EcologybiologyEcologyLongevityReproductive isolationALATE PRODUCTIONbiology.organism_classificationReproductive isolationSJOSTEDT ISOPTERA[SDE.BE] Environmental Sciences/Biodiversity and Ecology010602 entomologySpinigerTermitidaeMACROTERMES-MICHAELSENIInsect ScienceESTABLISHMENTBiological dispersalCOMB[SDE.BE]Environmental Sciences/Biodiversity and EcologyMacrotermitinaeSEX-RATIOS
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Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium

2010

Abstract Background Synechocystis sp. PCC6803 is a cyanobacterium considered as a candidate photo-biological production platform - an attractive cell factory capable of using CO2 and light as carbon and energy source, respectively. In order to enable efficient use of metabolic potential of Synechocystis sp. PCC6803, it is of importance to develop tools for uncovering stoichiometric and regulatory principles in the Synechocystis metabolic network. Results We report the most comprehensive metabolic model of Synechocystis sp. PCC6803 available, iSyn669, which includes 882 reactions, associated with 669 genes, and 790 metabolites. The model includes a detailed biomass equation which encompasses…

0106 biological sciencesSystems biologyIn silicoMetabolic networkComputational biologyBiologyModels Biological01 natural sciencesMetabolic engineeringGene Knockout Techniques03 medical and health sciencesStructural BiologyModelling and Simulation010608 biotechnologyBotanyBiomassPhotosynthesislcsh:QH301-705.5Molecular Biology030304 developmental biologyAutotrophic Processes0303 health sciencesGene Expression ProfilingApplied MathematicsSynechocystisSynechocystisGenomicsDarknessbiology.organism_classificationComputer Science ApplicationsFlux balance analysislcsh:Biology (General)Genes BacterialAutotrophic ProcessesModeling and SimulationEnergy sourceGenome BacterialResearch ArticleBMC Systems Biology
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Effects of a mobile disturbance pattern on dynamic patch networks and metapopulation persistence

2021

Abstract Motivation Certain early-succession habitats may emerge only at restricted locations following disturbance. Therefore, whether disturbances tend to occur at certain sites or not can significantly affect habitat availability and metapopulation persistence of early-successional habitat specialists. Available models that combine metapopulation and landscape processes do not address how to model mobile, spatially shifting disturbance intensities independent of factors of site suitability. We present a model that allows the study on how a mobile disturbance pattern, of either natural or anthropogenic origin, affects patch network and metapopulation dynamics in realistic, heterogeneous l…

0106 biological sciencesThe false heath fritillaryDisturbance (geology)Metapopulation dynamicsClimate changeHabitat suitability modelsMetapopulationhabitaatti010603 evolutionary biology01 natural sciencesMetapopulation modelsmetapopulaatiotMelitaea diaminaMelitaea diaminabiologyEcology010604 marine biology & hydrobiologyEcological Modelingtummaverkkoperhonen15. Life on landbiology.organism_classificationpopulaatiodynamiikkaHabitat dynamicsHeath fritillaryGeographyHabitatWildlife Ecology and ConservationButterflyPersistence (discontinuity)
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Shift in Tuna Catches due to Ocean Warming.

2017

Ocean warming is already affecting global fisheries with an increasing dominance of catches of warmer water species at higher latitudes and lower catches of tropical and subtropical species in the tropics. Tuna distributions are highly conditioned by sea temperature, for this reason and their worldwide distribution, their populations may be a good indicator of the effect of climate change on global fisheries. This study shows the shift of tuna catches in subtropical latitudes on a global scale. From 1965 to 2011, the percentage of tropical tuna in longliner catches exhibited a significantly increasing trend in a study area that included subtropical regions of the Atlantic and western Pacifi…

0106 biological sciencesTime Factors010504 meteorology & atmospheric sciencesEffects of global warming on oceanslcsh:MedicineMarine and Aquatic SciencesOceanographyGlobal Warming01 natural sciencesOceansTropical climateClimate changeZoologíaPesqueríaslcsh:ScienceIndian OceanNorthern HemisphereLatitudeMultidisciplinaryGeographyFishesTemperatureAgricultureOsteichthyesVertebratesResearch ArticleCartographyOceans and SeasFisheriesClimate changeSede Central IEOSubtropicsAnimalsVulnerability of tropical countries to climate change14. Life underwaterOcean TemperatureTropical tuna distribution0105 earth and related environmental sciencesTropical ClimatePacific OceanTuna010604 marine biology & hydrobiologylcsh:RGlobal warmingOrganismsBiology and Life SciencesTropicsNumerical Analysis Computer-AssistedBodies of WaterModels TheoreticalFisherySea surface temperatureEffect on fisheries13. Climate actionEarth SciencesEnvironmental sciencelcsh:QTunaGeographic areas
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