Search results for "ENRICHMENT"
showing 10 items of 131 documents
Bioavailability and assessment of heavy metal pollution in sediment cores off the Mejerda River Delta (Gulf of Tunis): How useful is a multiproxy app…
2016
International audience; Three core samples were taken from zones offshore from the Mejerda River Delta (Tunisia) and analyzed formajor and trace elements to assess their relationships with organic matter, monosulfides and carbonates, aswell as for pollution and bioavailability. Chemical speciation,ΣSEM/AVS, the enrichment factor (EF) and thegeo-accumulation index (I-geo) were used. Iron, cadmium, lead and zinc – the most frequently mined metalsin the Mejerda catchment – were found as contaminants in the offshore areas. Estimations of trace elementaccumulation using the EF and the I-geo index show that lead, and to a lesser extent zinc, are the most pollutingmetals off the Mejerda outlet. Ac…
Pollution assessment of heavy metals in soils of India and ecological risk assessment: A state-of-the-art
2019
Soil is substantive component of biosphere, which is exposed to plethora of pollutants including heavy metals. These are added by natural as well as anthropogenic activities. Upsurge in heavy metal content affects all organisms by biomagnification. So, it becomes vital to create a database of heavy metals concentration in soil. This is relevant in countries where unsustainable intensive agriculture, industrial and urban development is in progress. The present review of the scientific literature from 1991 to 2018 on heavy metals in soils in India shows that Zn and Pb exceeded their limits for Indian natural soil guidelines (Zn 22.1 and Pb 13.1 μg/g), Canada (Zn 200 μg/g), Swedish (80 μg/g) a…
Potentially toxic elements in fen peatland soils located near lignite-fired power plants in Central Poland
2021
Abstract The Grojec Valley (GV) peatland area in Central Poland is located close to lignite-fired power plants, which could be sources of potentially toxic elements (PTE). The aims of this study are: (1) to determine the effect of the lignite-fired power plants on soil pollution, (2) to evaluate pollution indices and magnetic susceptibility methods for determining the origin and distribution of PTE in soils, and (3) to demonstrate the importance of appropriate geochemical background (GB) selection for pollution studies in peatland soils. In order to comprehensively assess the soil pollution, four pollution indices (calculated using various types of GBs), and the mass-specific magnetic susce…
Distribution of Heavy Metals in Marine Sediments of Palermo Gulf (Sicily, Italy)
2008
Concentrations of Cr, Cu, Hg, Pb and Zn have been measured, by atomic absorption spectrophotometry, in the fine fraction (<63 μm) of surface sediments collected in 30 sites in the Palermo Gulf (Sicily, Italy) in order to assess the levels and the spatial distribution of these elements. Enrichment factors calculated with respect to clean areas have been considered to discriminate between levels due to background or to pollution contributions. The sampling stations, which form a grid inside these areas, are characterized by geographic proximity and by the presence of pollution sources. Ratio matching technique along with hierarchical clustering, minimum spanning tree and principal component a…
Toward the Standardization of Mitochondrial Proteomics: The Italian Mitochondrial Human Proteome Project Initiative
2017
The Mitochondrial Human Proteome Project aims at understanding the function of the mitochondrial proteome and its crosstalk with the proteome of other organelles. Being able to choose a suitable and validated enrichment protocol of functional mitochondria, based on the specific needs of the downstream proteomics analysis, would greatly help the researchers in the field. Mitochondrial fractions from ten model cell lines were prepared using three enrichment protocols and analyzed on seven different LC-MS/MS platforms. All data were processed using neXtProt as reference database. The data are available for the Human Proteome Project purposes through the ProteomeXchange Consortium with the iden…
Multi-laboratory experiment PME11 for the standardization of phosphoproteome analysis
2022
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DiseaseLinc: Disease Enrichment Analysis of Sets of Differentially Expressed LincRNAs
2021
Long intergenic non-coding RNAs (LincRNAs) are long RNAs that do not encode proteins. Functional evidence is lacking for most of them. Their biogenesis is not well-known, but it is thought that many lincRNAs originate from genomic duplication of coding material, resulting in pseudogenes, gene copies that lose their original function and can accumulate mutations. While most pseudogenes eventually stop producing a transcript and become erased by mutations, many of these pseudogene-based lincRNAs keep similarity to the parental gene from which they originated, possibly for functional reasons. For example, they can act as decoys for miRNAs targeting the parental gene. Enrichment analysis of fun…
GeneTonic: an R/Bioconductor package for streamlining the interpretation of RNA-seq data
2021
AbstractBackgroundThe interpretation of results from transcriptome profiling experiments via RNA sequencing (RNA-seq) can be a complex task, where the essential information is distributed among different tabular and list formats - normalized expression values, results from differential expression analysis, and results from functional enrichment analyses. A number of tools and databases are widely used for the purpose of identification of relevant functional patterns, yet often their contextualization within the data and results at hand is not straightforward, especially if these analytic components are not combined together efficiently.ResultsWe developed the GeneTonic software package, whi…
The effect of mariculture facilities on water column trophodynamics as revealed by biochemical features of suspended organic matter (South Tyrrhenian…
2006
A comparison of a Mediterranean aquaculture impacted area and control areas was made to assess the effect of fish farm waste discharge on the biochemical features of the water column. Trophic variables commonly used in marine ecology such as total suspended matter, suspended chlorophyll-a, biochemical features of particulate organic matter (proteins, lipids and carbohydrates) and biopolymeric carbon were chosen as the best descriptors of trophic conditions. An initial analysis of data from the impact area was carried out in order to test the effect of farm waste using a gradient of distances downstream from the fish farm cages (50 m, 300 m, 1000 m). The results were then compared with a con…
Growth of Mytilus galloprovincialis (mollusca, bivalvia) close to fish farms: a case of integrated multi-trophic aquaculture within the Tyrrhenian Sea
2009
A current practice of marine aquaculture is to integrate fish with low-trophic-level organisms (e.g. molluscs and/or algae) during farming to minimise effects of cultivation on the surrounding environment and to potentially increase economic income. This hypothesis has been tested in the present article experimentally, by co-cultivating fish and mussels (Mytilus galloprovincialis) in the field. Integrated multi-trophic aquaculture (IMTA) experiments were started in July 2004 by transplanting mussel seed at two depths (-3 and -9 m) within 1,000 m downstream to fish cages and at 1,000 m upstream from cages. Mussels were cultured in nylon net bags for 12 months and the growth recorded biometri…