Search results for "Engineering sciences. Technology"

showing 10 items of 32 documents

Universal natural shapes: From unifying shape description to simple methods for shape analysis and boundary value problems

2012

Gielis curves and surfaces can describe a wide range of natural shapes and they have been used in various studies in biology and physics as descriptive tool. This has stimulated the generalization of widely used computational methods. Here we show that proper normalization of the Levenberg-Marquardt algorithm allows for efficient and robust reconstruction of Gielis curves, including self-intersecting and asymmetric curves, without increasing the overall complexity of the algorithm. Then, we show how complex curves of k-type can be constructed and how solutions to the Dirichlet problem for the Laplace equation on these complex domains can be derived using a semi-Fourier method. In all three …

Evolutionary algorithmlcsh:MedicineGeometryBioinformaticsCurvature[ INFO.INFO-CV ] Computer Science [cs]/Computer Vision and Pattern Recognition [cs.CV]Plant Genetics01 natural sciences03 medical and health sciencessymbols.namesake[ MATH.MATH-AP ] Mathematics [math]/Analysis of PDEs [math.AP]Non-Euclidean geometryApplied mathematics[MATH.MATH-AP]Mathematics [math]/Analysis of PDEs [math.AP]Boundary value problemBounday Value Problem0101 mathematicslcsh:ScienceBiologyMathematical ComputingGeneralLiterature_REFERENCE(e.g.dictionariesencyclopediasglossaries)030304 developmental biologyLaplace's equationPhysicsDirichlet problem0303 health sciencesMultidisciplinaryPhysicsApplied Mathematicslcsh:R010102 general mathematicsComputational Biology[INFO.INFO-CV]Computer Science [cs]/Computer Vision and Pattern Recognition [cs.CV]Laplace equationModels TheoreticalGielis CurvesFourier analysisComputer Sciencesymbolslcsh:QEngineering sciences. TechnologyAlgorithmsMathematicsShape analysis (digital geometry)Research ArticleDevelopmental BiologyComputer Modeling
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CO rebinding kinetics and molecular dynamics simulations highlight dynamic regulation of internal cavities in human cytoglobin

2013

Abstract: Cytoglobin (Cygb) was recently discovered in the human genome and localized in different tissues. It was suggested to play tissue-specific protective roles, spanning from scavenging of reactive oxygen species in neurons to supplying oxygen to enzymes in fibroblasts. To shed light on the functioning of such versatile machinery, we have studied the processes supporting transport of gaseous heme ligands in Cygb. Carbon monoxide rebinding shows a complex kinetic pattern with several distinct reaction intermediates, reflecting rebinding from temporary docking sites, second order recombination, and formation (and dissociation) of a bis-histidyl heme hexacoordinated reaction intermediate…

Genetics and Molecular Biology (all)ProteomicsProtein FoldingProtein ConformationMolecular biologylcsh:MedicineCrystallography X-RayLigandsBiophysics SimulationsBiochemistrychemistry.chemical_compoundProtein structureMacromolecular Structure AnalysisCinètica enzimàticaBinding Sites; Carbon Monoxide; Crystallography X-Ray; Globins; Humans; Kinetics; Ligands; Molecular Dynamics Simulation; Oxygenases; Point Mutation; Protein Binding; Protein Conformation; Medicine (all); Biochemistry Genetics and Molecular Biology (all); Agricultural and Biological Sciences (all)Biomacromolecule-Ligand Interactionslcsh:ScienceHemeCarbon MonoxideCrystallographyHemoproteinsMultidisciplinaryMedicine (all)PhysicsCytoglobinMetabolismeGlobinsBiochemistryOxygenasesddc:500Engineering sciences. TechnologyProtein BindingResearch ArticleBioquímicaProtein StructureBiophysicsReaction intermediateMolecular Dynamics SimulationProtein ChemistryGeneticsHumansPoint MutationGlobinProtein InteractionsBiologyBiologia molecularBinding SitesLigandCytoglobinlcsh:REnzyme kineticsOxygen transportProteinsComputational BiologyKineticsMetabolismAgricultural and Biological Sciences (all)chemistryX-RayBiophysicslcsh:QHuman medicineGenèticaCarbon monoxide
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Hypoxia and Human Genome Stability: Downregulation of BRCA2 Expression in Breast Cancer Cell Lines

2013

Previously, it has been reported that hypoxia causes increased mutagenesis and alteration in DNA repair mechanisms. In 2005, an interesting study showed that hypoxia-induced decreases in BRCA1 expression and the consequent suppression of homologous recombination may lead to genetic instability. However, nothing is yet known about the involvement of BRCA2 in hypoxic conditions in breast cancer. Initially, a cell proliferation assay allowed us to hypothesize that hypoxia could negatively regulate the breast cancer cell growth in short term in vitro studies. Subsequently, we analyzed gene expression in breast cancer cell lines exposed to hypoxic condition by microarray analysis. Interestingly,…

Genome instabilityDNA RepairArticle SubjectDNA repairDNA damageSettore MED/06 - Oncologia MedicaDown-Regulationlcsh:MedicineBreast NeoplasmsBiologyGeneral Biochemistry Genetics and Molecular BiologyGenomic InstabilityBreast cancerCell Line TumorBreast CancermedicineHumansEnzyme Inhibitorsskin and connective tissue diseasesHypoxiaBiologyGeneral Immunology and MicrobiologyBRCA1 ProteinGenome Humanlcsh:RGenome StabilityGeneral MedicineDNA repair protein XRCC4medicine.diseaseBRCA2Cell HypoxiaAmino Acids DicarboxylicGene Expression Regulation NeoplasticCancer researchDNA mismatch repairFemaleHuman medicineHypoxia; Genome Stability; BRCA2; Breast CancerHomologous recombinationEngineering sciences. TechnologyNucleotide excision repairResearch ArticleDNA Damage
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Experimental Sentinel-2 LAI estimation using parametric, non-parametric and physical retrieval methods – A comparison

2015

Abstract Given the forthcoming availability of Sentinel-2 (S2) images, this paper provides a systematic comparison of retrieval accuracy and processing speed of a multitude of parametric, non-parametric and physically-based retrieval methods using simulated S2 data. An experimental field dataset (SPARC), collected at the agricultural site of Barrax (Spain), was used to evaluate different retrieval methods on their ability to estimate leaf area index (LAI). With regard to parametric methods, all possible band combinations for several two-band and three-band index formulations and a linear regression fitting function have been evaluated. From a set of over ten thousand indices evaluated, the …

HeteroscedasticityMean squared errorEconomicsComputer scienceImage processingBiophysical variablessymbols.namesakeLaboratory of Geo-information Science and Remote SensingMachine learningStatisticsLinear regressionLaboratorium voor Geo-informatiekunde en Remote SensingComputers in Earth SciencesParametricEngineering (miscellaneous)Gaussian processPhysically-based RTM inversionParametric statisticsPhysicsNonparametric statisticsPE&RCNon-parametricAtomic and Molecular Physics and OpticsComputer Science ApplicationsLookup tablesymbolsSentinel-2Engineering sciences. TechnologyAlgorithmISPRS Journal of Photogrammetry and Remote Sensing
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Improving extracellular vesicles visualization: From static to motion

2020

AbstractIn the last decade, extracellular vesicles (EVs) have become a hot topic. The findings on EVs content and effects have made them a major field of interest in cancer research. EVs, are able to be internalized through integrins expressed in parental cells, in a tissue specific manner, as a key step of cancer progression and pre-metastatic niche formation. However, this specificity might lead to new opportunities in cancer treatment by using EVs as devices for drug delivery. For future applications of EVs in cancer, improved protocols and methods for EVs isolation and visualization are required. Our group has put efforts on developing a protocol able to track the EVs for in vivo intern…

InteractionIntravital MicroscopyComputer sciencemedia_common.quotation_subjectlcsh:MedicineAntineoplastic AgentsvideoExosomesNSCLCTime-Lapse ImagingExtracellular vesiclesArticleFluorescence imagingExtracellular VesiclesSettore BIO/13 - Biologia ApplicataCell Line TumorNeoplasmsmedicineHumansTissue specificInternalizationlcsh:ScienceBiologymedia_commonDrug CarriersMicroscopy ConfocalMultivesicular bodiesMultidisciplinaryDisease progressionlcsh:RCancerEpithelial Cellsmedicine.diseaseCancer treatmentCell biologyinternalizationNucleic acidsConfocal microscopyTransportersDrug deliveryDisease ProgressionMicroscopy Electron ScanningIsolation separation and purificationlcsh:QHuman medicineextracellular vesicleEngineering sciences. TechnologyUltracentrifugation
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Prussian Blue Analogues of Reduced Dimensionality

2012

Abstract: Mixed-valence polycyanides (Prussian Blue analogues) possess a rich palette of properties spanning from room-temperature ferromagnetism to zero thermal expansion, which can be tuned by chemical modifications or the application of external stimuli (temperature, pressure, light irradiation). While molecule-based materials can combine physical and chemical properties associated with molecular-scale building blocks, their successful integration into real devices depends primarily on higher-order properties such as crystal size, shape, morphology, and organization. Herein a study of a new reduced-dimensionality system based on Prussian Blue analogues (PBAs) is presented. The system is …

LANGMUIR-BLODGETT-FILMSMaterials scienceSpin glassORDERING TEMPERATUREsingle-chain magnetsNanotechnologyiron(ii) complex02 engineering and technologyCrystal structure010402 general chemistrySINGLE-CHAIN MAGNETSlangmuir-blodgett-films01 natural sciencesThermal expansionBiomaterialsCrystalchemistry.chemical_compoundPHOTOINDUCED MAGNETIZATIONTHIN-FILMSDEGREES-Cphotoinduced magnetizationMoleculeGeneral Materials ScienceCRYSTAL-STRUCTURESThin filmPrussian bluePhysicsGeneral Chemistry021001 nanoscience & nanotechnologyIRON(II) COMPLEX0104 chemical sciencesHYBRID FILMSordering temperaturesquare grid networkChemistrychemistryFerromagnetismSQUARE GRID NETWORKthin-filmshybrid filmsdegrees-c0210 nano-technologyEngineering sciences. Technologycrystal-structuresBiotechnologySmall
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Mapping disparities in education across low- and middle-income countries

2020

Educational attainment is an important social determinant of maternal, newborn, and child health1–3. As a tool for promoting gender equity, it has gained increasing traction in popular media, international aid strategies, and global agenda-setting4–6. The global health agenda is increasingly focused on evidence of precision public health, which illustrates the subnational distribution of disease and illness7,8; however, an agenda focused on future equity must integrate comparable evidence on the distribution of social determinants of health9–11. Here we expand on the available precision SDG evidence by estimating the subnational distribution of educational attainment, including the proporti…

MaleATTAINMENTHealth StatusDiseaseeducation; low- and middle-income countries0302 clinical medicineWORLDgenderGlobal healthrisk factors030212 general & internal medicineAetiology10. No inequalitymedia_commonDeveloping worldPediatricMultidisciplinaryR1. No povertyMultidisciplinary SciencesGeographyScience & Technology - Other TopicsFemaleHEALTHdeveloping worldsocial and economic factorsEngineering sciences. TechnologydisparitieAFRICAmedicine.medical_specialty330InequalityGeneral Science & Technologymedia_common.quotation_subjectMODELSDeveloping countryLocal Burden of Disease Educational Attainment CollaboratorsArticleHealthcare improvement science Radboud Institute for Health Sciences [Radboudumc 18]Education03 medical and health sciences2.3 PsychologicalmedicineHumansSocietySocial determinants of healthDeveloping CountriesScience & TechnologyEquity (economics)MORTALITYPublic healthBayes TheoremEducational attainment3141 Health care sciencesocietyGood Health and Well BeingRisk factorsSocioeconomic FactorsDemographic economics030217 neurology & neurosurgery
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Clinical phenotypes and comorbidity in European sleep apnoea patients

2016

PubMed ID: 27701416

MalePulmonologyPhysiologyApneamedicine.medical_treatmentlcsh:MedicineComorbidityPolysomnographyCardiovascular MedicineMedicine (all); Biochemistry Genetics and Molecular Biology (all); Agricultural and Biological Sciences (all)THERAPYBody Mass Index0302 clinical medicineRisk FactorsPositive airway pressureMedicine and Health SciencesInsomniaMedicineProspective StudiesContinuous positive airway pressurelcsh:ScienceProspective cohort studyClinical NeurophysiologyAged 80 and overHypersomniaMultidisciplinarymedicine.diagnostic_testMedicine (all)Sleep apneaMiddle AgedDEPRESSIONPREVALENCEComputingMilieux_MANAGEMENTOFCOMPUTINGANDINFORMATIONSYSTEMSPhenotypeNeurologyPhysiological ParametersCardiovascular DiseasesCARDIOVASCULAR-DISEASEFemaleInformationSystems_MISCELLANEOUSmedicine.symptomEngineering sciences. TechnologyHypopneaINSOMNIA SYMPTOMSResearch ArticleAdultmedicine.medical_specialtyInsomniaSleep ApneaAdolescentPOSITIVE AIRWAY PRESSUREPolysomnographySettore MED/10 - Malattie Dell'Apparato RespiratorioWhite PeopleYoung Adult03 medical and health sciencesSleep Apnea SyndromesDAYTIMEstomatognathic systemComorbiditatDiagnostic MedicineInternal medicinemental disordersHumansCOMMONAgedHYPOPNEABiochemistry Genetics and Molecular Biology (all)HYPERTENSIONbusiness.industrylcsh:RBody WeightComputerSystemsOrganization_COMPUTER-COMMUNICATIONNETWORKSBiology and Life Sciencesta3121medicine.diseaseComorbidityDyssomniasrespiratory tract diseasesnervous system diseasesComputingMethodologies_PATTERNRECOGNITIONAgricultural and Biological Sciences (all)030228 respiratory systemPhysical therapylcsh:QSleep DisordersPhysiological ProcessesSleepbusiness030217 neurology & neurosurgeryFollow-Up Studies
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Demographic responses to oxidative stress and inflammation in the wandering albatross (Diomedea exulans).

2015

12 pages; International audience; One of the major challenges in ecological research is the elucidation of physiological mechanisms that underlie the demographic traits of wild animals. We have assessed whether a marker of plasma oxidative stress (TBARS) and plasma haptoglobin (protein of the acute inflammatory phase response) measured at time t predict five demographic parameters (survival rate, return rate to the breeding colony, breeding probability, hatching and fledging success) in sexually mature wandering albatrosses over the next four years (Diomedea exulans) using a five-year individual-based dataset. Non-breeder males, but not females, having higher TBARS at time t had reduced fut…

Malemedicine.medical_specialtyAnimal sexual behaviourZoologylcsh:MedicineAlbatrossBirdsReproductive senescenceInternal medicinemedicineTBARSAnimalslcsh:ScienceInflammation[ SDE.BE ] Environmental Sciences/Biodiversity and EcologyMultidisciplinarybiologyReproductive successHatchingReproductionHaptoglobinlcsh:Rbiology.organism_classificationOxidative StressEndocrinologyWandering albatrossbiology.proteinFemalelcsh:Q[SDE.BE]Environmental Sciences/Biodiversity and EcologyEngineering sciences. TechnologyResearch Article
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Pan-cancer analysis of whole genomes

2020

Publisher's version (útgefin grein)

Maletert promoter mutationsCancer development and immune defence Radboud Institute for Molecular Life Sciences [Radboudumc 2]DNA Mutational AnalysisNormal tissuesystematic analysisGermlineTranscriptome0302 clinical medicineAetiologyCàncerCellular SenescenceCancer0303 health sciencesdna-damageMassive parallel sequencingPan cancerREARRANGEMENTSHigh-Throughput Nucleotide SequencingGenomicsSciences bio-médicales et agricolesTelomereCOMPREHENSIVE3. Good healthTERT PROMOTER MUTATIONSsignatures030220 oncology & carcinogenesisScience & Technology - Other TopicsErfðarannsóknirHuman:Informàtica::Aplicacions de la informàtica::Bioinformàtica [Àrees temàtiques de la UPC]EvolutionRNA SplicingGenomicsArticleEvolution MolecularStructural variationRC025403 medical and health sciencesSDG 3 - Good Health and Well-beingGeneticgenomicsSYSTEMATIC ANALYSISGeneticsGenomics--Databases.HumansGenetic TestingMolecular BiologySIGNATURESWhole genome sequencing1000 MultidisciplinaryChromothripsisScience & TechnologyRC0254 Neoplasms. Tumors. Oncology (including Cancer)Information DisseminationResearchInstitutes_Networks_Beacons/mcrcPreventionBiology and Life SciencesMolecularOncogenesCloud Computingmedicine.diseaseGenòmicaCompute cloudsMutation570 Life sciences; biologyCOMPREHENSIVE CHARACTERIZATIONGenèticaWhole Genome Sequencing--methodsBackground informationDNA Mutational Analysis ; Evolution ; Genetic / genetics ; Genome ; Genomics ; Germ-Line Mutation / genetics ; High-Throughput Nucleotide Sequencing ; Human / genetics ; Humans ; ICGC/TCGA Pan-Cancer Analysis of Whole Genomes ConsortiumMedizinGenomeWhole-genomeGenome mappingNeoplasms2.1 Biological and endogenous factorsPromoter Regions GeneticCàncer -- Aspectes genèticsTelomeraseGeneticsWomen's cancers Radboud Institute for Molecular Life Sciences [Radboudumc 17]MultidisciplinaryChromothripsisGenomeManchester Cancer Research Centregenomics cancer profiling3rd-DAS10124 Institute of Molecular Life SciencesWomen's cancers Radboud Institute for Health Sciences [Radboudumc 17]Multidisciplinary SciencesParallel sequencingICGC/TCGA Pan-Cancer Analysis of Whole Genomes ConsortiumFemaleprofilingMedical GeneticsEngineering sciences. TechnologyBiotechnologyGeneral Science & TechnologyThe Cancer Genome Atlas610 Medicine & healthComputational biologyQH426 GeneticsBiologyConsortium of the International Cancer Genome ConsortiumPromoter RegionsGermline mutationPan-cancer analysisKrabbameinsrannsóknirmedicinecancerddc:610QH426Germ-Line MutationMedicinsk genetikKrabbamein030304 developmental biologyCell ProliferationLANDSCAPEGenome Humancomprehensive characterizationPan-cancer analysis of whole genomesPoint mutationHuman GenomeCancerReproducibility of ResultsSOMATIC MUTATIONSEVOLUTIONCancer sequencing Chromothripsis telomereDNA-DAMAGEMutagenesisPATTERNS3111 BiomedicineCHARACTERIZATION
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