Search results for "Enumeration"
showing 10 items of 31 documents
Parsimonious Scenario for the Emergence of Viroid-Like Replicons De Novo
2019
This article belongs to the Special Issue Viroid-2018: International Conference on Viroids and Viroid-Like RNAs. Viroids are small, non-coding, circular RNA molecules that infect plants. Different hypotheses for their evolutionary origin have been put forward, such as an early emergence in a precellular RNA World or several de novo independent evolutionary origins in plants. Here, we discuss the plausibility of de novo emergence of viroid-like replicons by giving theoretical support to the likelihood of different steps along a parsimonious evolutionary pathway. While Avsunviroidae-like structures are relatively easy to obtain through evolution of a population of random RNA sequences of fixe…
Improved detection and enumeration of yeasts in wine by Cells-qPCR
2018
Abstract Quantitative PCR by directly sampling (Cells-qPCR) has been adapted to detect and quantify total yeasts, and B. bruxellensis, S. cerevisiae and Z. bailii species, in grape musts and wines. To increase assay sensitivity, the effects of a previous cell wall lysis, by both enzymatic and mechanical methods, were evaluated. Cell wall disruption by mechanical methods showed the best results to enhance assay sensitivity. Numerous standard curves were constructed by mechanically lysed cells in culture medium, and in white and red grape musts and wines. Good regression values (>0.99) and efficiencies (>0.99) were obtained, and it was possible to detect one single cell per reaction in all th…
Nested branch-and-price-and-cut for vehicle routing problems with multiple resource interdependencies
2019
Abstract This paper considers vehicle routing problems (VRPs) with multiple resource interdependencies and addresses the development and computational evaluation of an exact branch-and-price-and-cut algorithm for their solution. An interdependency between two resources means that the two resource consumptions influence one another in such a way that a tradeoff exists between them. This impacts the feasibility and/or the cost of a solution. The subproblem in branch-and-price-and-cut procedures for VRPs is very often a variant of the shortest-path problem with resource constraints (SPPRC). For the exact solution of many SPPRC variants, dynamic-programming based labeling algorithms are predomi…
A modified culture medium for improved isolation of marine vibrios
2019
Abstract Marine Vibrio members are of great interest for both ecological and biotechnological research, which often relies on their isolation. Whereas many efforts have been made for the detection of food‐borne pathogenic species, much less is known about the performances of standard culture media toward environmental vibrios. We show that the isolation/enumeration of marine vibrios using thiosulfate‐citrate‐bile salts‐sucrose agar (TCBS) as selective medium may be hampered by the variable adaptability of different taxa to the medium, which may result even in isolation failure and/or in substantial total count underestimation. We propose a modified TCBS as isolation medium, adjusted for mar…
Automated microorganisms activity detection on the early growth stage using artificial neural networks
2019
The paper proposes an approach of a novel non-contact optical technique for early evaluation of microbial activity. Noncontact evaluation will exploit laser speckle contrast imaging technique in combination with artificial neural network (ANN) based image processing. Microbial activity evaluation process will comprise acquisition of time variable laser speckle patterns in given sample, ANN based image processing and visualization of obtained results. The proposed technology will measure microbial activity (like growth speed) and implement these results for counting live microbes. It is expected, that proposed technology will help to evaluate number of colony forming units (CFU) and return r…
Exploring Azure Active Directory Attack Surface: Enumerating Authentication Methods with Open-Source Intelligence Tools
2022
Azure Active Directory (Azure AD) is Microsoft’s identity and access management service used globally by 90 per cent of Fortune 500 companies and many other organisations. Recent attacks by nation-state adversaries have targeted these organisations by exploiting known attack vectors. In this paper, open-source intelligence (OSINT) is gathered from organisations using Azure AD to explore the current attack surface. OSINT is collected from Fortune 500 companies and top 2000 universities globally. The collected OSINT includes authentication methods used by the organisation and the full name and phone number of the primary technical contact. The findings reveal that most organisations are using…
Flow-cytometric enumeration of reticulocytes with the new fluorochrome 1′,3′-diethyl-4,2′-quinolylthiacyanine
1992
Several flow-cytometric methods for reticulocyte enumeration in whole blood have been developed, with different degrees of practical use. Recently, a new fluorochrome, 1′,3′-diethyl-4,2′-quinolylthyacianine (DEQTC) was proposed in a brief report, as an alternative to thiazole orange for reticulocyte counting. We have evaluated the usefulness of this fluorescent stain by assessing the optimal conditions for the flow-cytometric analysis, and by comparing in double-blind assays the quantitative results of this technique with those obtained by manual counting with brilliant cresyl blue. Our results show that flow cytometry with DEQTC is highly correlated to the manual method (r=0.95–0.99), supp…
Open and Closed Words
2017
Combinatorics on words aims at finding deep connections between properties of sequences. The resulting theoretical findings are often used in the design of efficient combinatorial algorithms for string processing, but may also have independent interest, especially in connection with other areas of discrete mathematics. The property we discuss here is, for a given finite word, that of being closed. A finite word is called closed if it has length ≤ 1 or it contains a proper factor (substring) that occurs both as a prefix and as a suffix but does not have internal occurrences. Otherwise the word is called open. We illustrate several aspects of open and closed words and factors, and propose som…
The Linear Ordering Polytope
2010
So far we developed a general integer programming approach for solving the LOP. It was based on the canonical IP formulation with equations and 3-dicycle inequalities which was then strengthened by generating mod-k-inequalities as cutting planes. In this chapter we will add further ingredients by looking for problem- specific inequalities. To this end we will study the convex hull of feasible solutions of the LOP: the so-called linear ordering polytope.
Hierarchical modeling for rare event detection and cell subset alignment across flow cytometry samples.
2013
Flow cytometry is the prototypical assay for multi-parameter single cell analysis, and is essential in vaccine and biomarker research for the enumeration of antigen-specific lymphocytes that are often found in extremely low frequencies (0.1% or less). Standard analysis of flow cytometry data relies on visual identification of cell subsets by experts, a process that is subjective and often difficult to reproduce. An alternative and more objective approach is the use of statistical models to identify cell subsets of interest in an automated fashion. Two specific challenges for automated analysis are to detect extremely low frequency event subsets without biasing the estimate by pre-processing…