Search results for "Fides"

showing 10 items of 123 documents

Electrical Conductivity and Luminescence in Coordination Polymers Based on Copper(I)-Halides and Sulfur-Pyrimidine Ligands

2011

The solvothermal reactions between pyrimidinedisulfide (pym(2)S(2)) and CuI or CuBr(2) in CH(2)Cl(2):CH(3)CN lead to the formation of [Cu(11)I(7)(pymS)(4)](n) (pymSH = pyrimidine-2(1H)-thione) (1) and the dimer [Cu(II)(μ-Br)(Br)L](2) (L = 2-(pyrimidin-2-ylamino)-1,3-thiazole-4-carbaldehyde) (2). In the later reaction, there is an in situ S-S, S-C(sp(2)), and C(sp(2))-N multiple bond cleavage of the pyrimidinedisulfide resulting in the formation of 2-(pyrimidin-2-ylamino)-1,3-thiazole-4-carbaldehyde. Interestingly, similar reactions carried out just with a change in the solvent (H(2)O:CH(3)CN instead of CH(2)Cl(2):CH(3)CN) give rise to the formation of coordination polymers with rather diffe…

Models MolecularLuminescencePyrimidinePolymersDimerInorganic chemistryElectric ConductivityHalidechemistry.chemical_elementSulfidesCrystallography X-RayLigandsSulfurCopperInorganic ChemistrySolventchemistry.chemical_compoundPyrimidineschemistryCoordination ComplexesPolymer chemistryPhysical and Theoretical ChemistryLuminescenceCopperBond cleavageInorganic Chemistry
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Combining reactive triblock copolymers with functional cross-linkers: A versatile pathway to disulfide stabilized-polyplex libraries and their applic…

2017

Therapeutic nucleic acids such as pDNA hold great promise for the treatment of multiple diseases. These therapeutic interventions are, however, compromised by the lack of efficient and safe non-viral delivery systems, which guarantee stability during blood circulation together with high transfection efficiency. To provide these desired properties within one system, we propose the use of reactive triblock copolypept(o)ides, which include a stealth-like block for efficient shielding, a hydrophobic block based on reactive disulfides for cross-linking and a cationic block for complexation of pDNA. After the complexation step, bifunctional cross-linkers can be employed to bio-reversibly stabiliz…

Models MolecularLysisEndosomePolymersPharmaceutical ScienceNanotechnology02 engineering and technologyGene delivery010402 general chemistryCleavage (embryo)Transfection01 natural sciencesCell Linechemistry.chemical_compoundMiceVaccines DNAAnimalsHumansDisulfidesBifunctionalCationic polymerizationGene Transfer TechniquesTransfection021001 nanoscience & nanotechnology0104 chemical sciencesCross-Linking ReagentschemistryBiophysicsNucleic acid0210 nano-technologyPlasmidsJournal of controlled release : official journal of the Controlled Release Society
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Simultaneous Freezing of Chirality and In−Out Conformation of a Macropentacyclic Cryptand by Protonation

2004

Compound 1, a cryptand-derived macropentacycle, is a flexible molecule that encompasses many conformations (symmetrical, unsymmetrical, and chiral ones) depending on the observation temperature (VT 1H NMR). Selective monoprotonation of this molecule leads to a totally unsymmetrical, rigidly chiral species in solution (1H NMR). Helical chirality and in-out conformation of monoprotonated 1 are observed in the solid state by X-ray diffraction analysis, as well as the proton location. The latter is bound to the endo bridgehead nitrogen atom and involved in hydrogen-bonding interactions with the three closest sulfurs. Significant induction of chirality is triggered by reaction of 1 with the opti…

Models MolecularMagnetic Resonance SpectroscopyProtonChemistryStereochemistryCryptandMolecular ConformationDiastereomerStereoisomerismProtonationGeneral ChemistryNuclear magnetic resonance spectroscopyCrystallography X-RayBiochemistryCatalysisColloid and Surface ChemistryCrown EthersBenzene DerivativesProton NMRMoleculeDisulfidesAminesProtonsChirality (chemistry)Journal of the American Chemical Society
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Mutational analysis of disulfide bonds in the trypsin-reactive subdomain of a Bowman-Birk-type inhibitor of trypsin and chymotrypsin--cooperative ver…

1998

It is widely believed that protein folding is a hierarchical process proceeding from secondary structure via subdomains and domains towards the complete tertiary structure. Accordingly, protein subdomains should behave as independent folding units. However, this prediction would underestimate the well-established structural significance of tertiary context and domain interfaces in proteins. The principal objective of this work was to distinguish between autonomous and cooperative refolding of protein subdomains by means of mutational analysis. The double-headed Bowman-Birk inhibitor of trypsin and chymotrypsin of known crystal structure was selected for study. The relative orientation of th…

Models MolecularProtein FoldingProtein ConformationTrypsin inhibitorMolecular Sequence DataContext (language use)BiochemistryProtein Structure SecondaryProtein structureDrug StabilityEscherichia coliChymotrypsinTrypsinAmino Acid SequenceDisulfidesCloning MolecularProtein secondary structureTrypsin Inhibitor Bowman-Birk SoybeanChymotrypsinbiologyBase SequenceChemistryGenetic VariationDNAProtein tertiary structureRecombinant ProteinsProtein Structure TertiaryFolding (chemistry)Crystallographybiology.proteinBiophysicsMutagenesis Site-DirectedProtein foldingEuropean journal of biochemistry
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cDNA Cloning and Functional Expression of Jerdostatin, a Novel RTS-disintegrin from Trimeresurus jerdonii and a Specific Antagonist of the α1β1 Integ…

2005

Jerdostatin represents a novel RTS-containing short disintegrin cloned by reverse transcriptase-PCR from the venom gland mRNA of the Chinese Jerdons pit viper Trimeresurus jerdonii. The jerdostatins precursor cDNA contained a 333-bp open reading frame encoding a signal peptide, a pre-peptide, and a 43-amino acid disintegrin domain, whose amino acid sequence displayed 80% identity with that of the KTS-disintegrins obtustatin and viperistatin. The jerdostatin cDNA structure represents the first complete open reading frame of a short disintegrin and points to the emergence of jerdostatin from a short-coding gene. The different residues between jerdostatin and obtustatin/viperistatin are segreg…

Models MolecularSignal peptideProtein FoldingDNA ComplementaryMagnetic Resonance SpectroscopyProtein ConformationDisintegrinsMolecular Sequence DataIntegrinMutantGene ExpressionPeptide MappingBiochemistryIntegrin alpha1beta1Open Reading FramesExocrine GlandsComplementary DNACrotalid VenomsDisintegrinAnimalsTrimeresurusTrypsinAmino Acid SequenceCysteineDisulfidesCloning MolecularMolecular BiologyPeptide sequenceMessenger RNABase SequencebiologyCell BiologyMolecular biologyRecombinant ProteinsOpen reading frameMutagenesis Site-Directedbiology.proteinJournal of Biological Chemistry
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The redox state of the cell regulates the ligand binding affinity of human neuroglobin and cytoglobin.

2003

Neuroglobin and cytoglobin reversibly bind oxygen in competition with the distal histidine, and the observed oxygen affinity therefore depends on the properties of both ligands. In the absence of an external ligand, the iron atom of these globins is hexacoordinated. There are three cysteine residues in human neuroglobin; those at positions CD7 and D5 are sufficiently close to form an internal disulfide bond. Both cysteine residues in cytoglobin, although localized in other positions than in human neuroglobin, may form a disulfide bond as well. The existence and position of these disulfide bonds was demonstrated by mass spectrometry and thiol accessibility studies. Mutation of the cysteines …

Models MolecularSpectrometry Mass Electrospray IonizationStereochemistryNeuroglobinNerve Tissue ProteinsLigandsBiochemistryRedoxHumansHistidineCysteineDisulfidesGlobinMolecular BiologyHistidineChemistryCytoglobinCytoglobinCell BiologyLigand (biochemistry)Recombinant ProteinsGlobinsOxygenKineticsNeuroglobinOxidation-ReductionOxygen bindingProtein BindingCysteine
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Controlling quaternary structure assembly: subunit interface engineering and crystal structure of dual chain avidin.

2006

Dual chain avidin (dcAvd) is an engineered avidin form, in which two circularly permuted chicken avidin monomers are fused into one polypeptide chain. DcAvd can theoretically form two different pseudotetrameric quaternary assemblies because of symmetry at the monomer-monomer interfaces. Here, our aim was to control the assembly of the quaternary structure of dcAvd. We introduced the mutation I117C into one of the circularly permuted domains of dcAvd and scanned residues along the 1-3 subunit interface of the other domain. Interestingly, V115H resulted in a single, disulfide locked quaternary assembly of dcAvd, whereas I117H could not guide the oligomerisation process even though it stabilis…

Models MolecularStereochemistryProtein subunitBiotinGene ExpressionCrystal structureCrystallography X-RayLigandsProtein EngineeringProtein–protein interactionchemistry.chemical_compoundBiotinStructural BiologyAnimalsDisulfidesProtein Structure QuaternaryMolecular BiologyChromatography High Pressure LiquidbiologyProtein engineeringHydrogen-Ion ConcentrationAvidinCrystallographyProtein SubunitsMonomerchemistryMutationbiology.proteinChromatography GelThermodynamicsProtein quaternary structureChickensAvidinJournal of molecular biology
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Two Novel Ternary Dicopper(II) μ-Guanazole Complexes with Aromatic Amines Strongly Activated by Quantum Dots for DNA Cleavage

2013

Two novel (μ-guanazole)-bridged binuclear copper(II) complexes with 1,10-phenanthroline (phen) or 2,2'-bipyridine (bipy), [Cu2(μ-N2,N4-Hdatrz)(phen)2(H2O)(NO3)4] (1) and [Cu2(μ-N1,N2-datrz)2(μ-OH2)(bipy)2](ClO4)2 (2) (Hdatrz = 3,5-diamino-1,2,4-triazole = guanazole), have been prepared and characterized by X-ray diffraction, spectroscopy, and susceptibility measurements. Compounds 1 and 2 differ in the aromatic amine, which acts as a coligand, and in the Cu···Cu'-bridging system. Compound 1, which contains two mono-bridged copper ions, represents the first example of a discrete Cu-(NCN-trz)-Cu' complex. Compound 2, with two triply bridged copper ions, is one of the few compounds featuring a…

Models MolecularStereochemistryTriazolechemistry.chemical_elementSulfidesCrystallography X-RayCleavage (embryo)Inorganic Chemistrychemistry.chemical_compoundGuanazoleQuantum DotsCadmium CompoundsOrganometallic CompoundsMoleculeAminesDNA CleavagePhysical and Theoretical ChemistrySelenium CompoundsGroup 2 organometallic chemistrychemistry.chemical_classificationMolecular StructureAromatic amineDNAFluorescenceCopperCrystallographychemistryZinc CompoundsTernary operationCopper
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The refined structure of functional unit h of keyhole limpet hemocyanin (KLH1-h) reveals disulfide bridges

2011

Hemocyanins are multimeric oxygen-transport proteins in the hemolymph of many arthropods and mollusks. The overall molecular architecture of arthropod and molluscan hemocyanin is very different, although they possess a similar binuclear type 3 copper center to bind oxygen in a side-on conformation. Gastropod hemocyanin is a 35 nm cylindrical didecamer (2 × 10-mer) based on a 400 kDa subunit. The latter is subdivided into eight paralogous “functional units” (FU-a to FU-h), each with an active site. FU-a to FU-f contribute to the cylinder wall, whereas FU-g and FU-h form the internal collar complex. Atomic structures of FU-e and FU-g, and a 9 A cryoEM structure of the 8 MDa didecamer are avai…

Models Molecularchemistry.chemical_classificationbiologyCopper proteinmedicine.medical_treatmentProtein subunitClinical BiochemistryActive siteHemocyaninCell BiologyBiochemistryAmino acidCrystallographychemistryHemocyaninsHemolymphGeneticsbiology.proteinmedicineDisulfidesMolecular BiologyKeyhole limpet hemocyaninOxygen bindingIUBMB Life
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Absorption Properties of Metal–Semiconductor Hybrid Nanoparticles

2011

The optical response of hybrid metal-semiconductor nanoparticles exhibits different behaviors due to the proximity between the disparate materials. For some hybrid systems, such as CdS-Au matchstick-shaped hybrids, the particles essentially retain the optical properties of their original components, with minor changes. Other systems, such as CdSe-Au dumbbell-shaped nanoparticles, exhibit significant change in the optical properties due to strong coupling between the two materials. Here, we study the absorption of these hybrids by comparing experimental results with simulations using the discrete dipole approximation method (DDA) employing dielectric functions of the bare components as input…

Optics and PhotonicsMaterials sciencemetalJanus particlesMetal NanoparticlesPhysics::OpticsGeneral Physics and AstronomyNanoparticleNanotechnologyJanus particlesDielectricSulfidesDiscrete dipole approximationAbsorptionotpical absorption; metal; semiconductor; nanoparticleshybrid nanoparticlesplasmonCondensed Matter::Materials ScienceMicroscopy Electron TransmissionQuantum DotsCadmium CompoundsElectrochemistryNanotechnologyComputer SimulationGeneral Materials ScienceAbsorption (electromagnetic radiation)PlasmonexcitonGeneral Engineeringotpical absorptionsemiconductorCondensed Matter::Mesoscopic Systems and Quantum Hall EffectSemiconductorsMetalsQuantum dotChemical physicsHybrid systemnanoparticlesGoldDDAACS Nano
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