Search results for "INTRAC"

showing 10 items of 1509 documents

STABILITY OF A STOCHASTICALLY PERTURBED MODEL OF INTRACELLULAR SINGLE-STRANDED RNA VIRUS REPLICATION

2019

Compared to the replication of double-stranded RNA and DNA viruses, the replication of single-stranded viruses requires the production of a number of intermediate strands that serve as templates for the synthesis of genomic-sense strands. Two theoretical extreme mechanisms for replication for such single-stranded viruses have been proposed; one extreme being represented by the so-called linear stamping machine and the opposite extreme by the exponential growth. Of course, real systems are more complex and examples have been described in which a combination of such extreme mechanisms can also occur: a fraction of the produced progeny resulting from a stamping-machine type of replication that…

92D30 (primary) 34D20 60H10 (secondary)0209 industrial biotechnologyVirus dynamicsDynamical Systems (math.DS)02 engineering and technology03 medical and health scienceschemistry.chemical_compoundMathematical model020901 industrial engineering & automationReplication (statistics)Viral replicationFOS: MathematicsMathematics - Dynamical SystemsViral evolution030304 developmental biologySingle-Stranded RNA51ssRNA virusLyapunov function0303 health sciencesViral mutationsLyapunov methodEcologyApplied MathematicsRNAGeneral MedicineAgricultural and Biological Sciences (miscellaneous)Cell biologyStochastic modelViral replicationchemistryViral evolutionStabilityIntracellularDNAJournal of Biological Systems
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Fibronectin-binding nanoparticles for intracellular targeting addressed by B. burgdorferi BBK32 protein fragments.

2011

Virus-like particles (VLPs) are created by the self-assembly of multiple copies of envelope and/or capsid proteins from many viruses, mimicking the conformation of a native virus. Such noninfectious nanostructures are mainly used as antigen-presenting platforms, especially in vaccine research; however, some of them recently were used as scaffolds in biotechnology to produce targeted nanoparticles for intracellular delivery. This study demonstrates the creation of fusion VLPs using hepatitis B core protein-based system maintaining a fibronectin-binding property from B. burgdorferi BBK32 protein, including the evidence of particles’ transmission to BHK-21 target cells via caveolae/rafts endoc…

:MEDICINE [Research Subject Categories]virusesBiomedical EngineeringPharmaceutical ScienceMedicine (miscellaneous)BioengineeringPeptideBiologyVirusPlasmidBacterial ProteinsCaveolaeGeneral Materials ScienceDNA Primerschemistry.chemical_classificationBase SequenceVirologyCell biologyFibronectins:NATURAL SCIENCES::Biology [Research Subject Categories]FibronectinchemistryCapsidFibronectin bindingBorrelia burgdorferibiology.proteinMolecular MedicineNanoparticlesIntracellularPlasmidsNanomedicine : nanotechnology, biology, and medicine
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Down-regulation of Endogenous Amyloid Precursor Protein Processing due to Cellular Aging

2005

Processing of amyloid precursor protein (APP) is a well acknowledged central pathogenic mechanism in Alzheimer disease. However, influences of age-associated cellular alterations on the biochemistry of APP processing have not been studied in molecular detail so far. Here, we report that processing of endogenous APP is down-regulated during the aging of normal human fibroblasts (IMR-90). The generation of intracellular APP cleavage products C99, C83, and AICD gradually declines with increasing life span and is accompanied by a reduced secretion of soluble APP (sAPP) and sAPPalpha. Further, the maturation of APP was reduced in senescent cells, which has been shown to be directly mediated by a…

ADAM10NicastrinEndogenyBiochemistryCell LineAmyloid beta-Protein PrecursorMembrane MicrodomainsDownregulation and upregulationEndopeptidasesmental disordersPresenilin-1Amyloid precursor proteinAspartic Acid EndopeptidasesHumansSecretionMolecular BiologyCellular SenescenceMembrane GlycoproteinsbiologyChemistryMembrane ProteinsCell BiologyFibroblastsCholesterolBiochemistrybiology.proteinAmyloid Precursor Protein SecretasesProtein Processing Post-TranslationalAmyloid precursor protein secretaseIntracellularJournal of Biological Chemistry
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The inefficient aerobic energetics ofZymomonas mobilis: Identifying the bottleneck

2014

To investigate the mechanisms of Zymomonas mobilis uncoupled aerobic metabolism, growth properties of the wild-type strain Zm6 were compared to those of its respiratory mutants cytB and cydB, and the effects of the ATPase inhibitor DCCD on growth and intracellular ATP concentration were studied. The effects of the ATPase inhibitor DCCD on growth and intracellular ATP concentration strongly indicated that the apparent lack of oxidative phosphorylation in aerobically growing Z. mobilis culture might be caused by the ATP hydrolyzing activity of the H(+) -dependent ATPase in all analyzed strains. Aerobic growth yields of the mutants, and their capacity of oxidative ATP synthesis with ethanol we…

ATP synthasebiologyCellular respirationATPaseGeneral MedicineOxidative phosphorylationbiology.organism_classificationApplied Microbiology and BiotechnologyZymomonas mobilisElectron transport chainBiochemistrybiology.proteinPhosphorylationIntracellularJournal of Basic Microbiology
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Binding mode analysis of ABCA7 for the prediction of novel Alzheimer's disease therapeutics

2021

Graphical abstract

ATP Adenosine-triphosphateNBD nucleotide binding domainGSH reduced glutathionePolypharmacologyAlzheimer’s disease (AD)ATP-binding cassette transporterHTS high-throughput screeningBiochemistryABCA7Structural BiologyPLIF protein ligand interactionMSD membrane spanning domainPDB protein data bankTM transmembrane helixABC ATP-binding cassetteMultitarget modulation (PANABC)RMSD root mean square distanceABC transporter (ABCA1 ABCA4 ABCA7)Computer Science ApplicationsMOE Molecular Operating EnvironmentPharmacophoreSNP single-nucleotide polymorphismBiotechnologyResearch ArticleBBB blood-brain barrierBiophysicsDrug designComputational biologyBiologyAD Alzheimer’s diseasePET positron emission tomographyIC intracellular helixAPP amyloid precursor proteincryo-EM cryogenic-electron microscopyGeneticsHomology modelingBinding siteRational drug design and developmentComputingMethodologies_COMPUTERGRAPHICSNBD-cholesterol 7-nitro-2-13-benzoxadiazol-4-yl-cholesterolTransporterPSO particle swarm optimizationPET tracer (PETABC)ECD extracellular domainR-domain/region regulatory domain/regionABCA1biology.proteinEH extracellular helixTP248.13-248.65BODIPY-cholesterol 44-difluoro-4-bora-3a4a-diaza-s-indacene-cholesterolComputational and Structural Biotechnology Journal
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P2Y-mediated contractile responses in the longitudinal muscle of mouse distal colon: distinct signaling pathways

2008

ATPMouse distal colonP2Y purinoreceptorIntracellular calcium storeMuscular contractionSettore BIO/09 - Fisiologia
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Activation of P2Y receptors by ATP and by its analogue, ADPbetaS, triggers two calcium signal pathways in the longitudinal muscle of mouse distal col…

2008

Our previous research showed that ATP and adenosine 5'-O-2-thiodiphosphate (ADPbetaS) induce contractile effects in the longitudinal muscle of mouse distal colon via activation of P2Y receptors which are not P2Y(1) or P2Y(12) subtypes. This study investigated the nature of the P2Y receptor subtype(s) and the mechanisms leading to the intracellular calcium concentration increase necessary to trigger muscular contraction. Motor responses of mouse colonic longitudinal muscle to P2Y receptor agonists were examined in vitro as changes in isometric tension. ATP or ADPbetaS induced muscular contraction, which was not affected by P2Y(11) or P2Y(13) selective antagonists. Calcium-free solution or th…

ATPP2Y purinoreceptorIntracellular calcium storeMuscular contractionSettore BIO/09 - Fisiologia
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Agonist-specific Ca2+ signaling at P2Y receptors

2008

ATPP2Y purinoreceptorIntracellular calcium storeMuscular contractionSettore BIO/09 - Fisiologia
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Systematic Analysis of Combined Thrombolysis Using Ultrasound and Different Fibrinolytic Drugs in an in Vitro Clot Model of Intracerebral Hemorrhage.

2021

Adequate removal of blood clots by minimally invasive surgery seems to correlate with a better clinical outcome in patients with intracerebral hemorrhages (ICHs). Moreover, neurotoxic effects of recombinant tissue plasminogen activator have been reported. The aim of this study was to improve fibrinolysis using an intra-clot ultrasound application with tenecteplase and urokinase in our established ICH clot model. One hundred thirty clots were produced from 25 or 50 mL of human blood, incubated for different periods and equipped with drainage, through which an ultrasound catheter was placed in 65 treatment clots for 1 h, randomly allocated into three groups: administration of ultrasound, admi…

Acoustics and UltrasonicsMechanical Thrombolysismedicine.medical_treatmentUltrasonic TherapyBiophysicsTenecteplase030204 cardiovascular system & hematologyIn Vitro Techniques03 medical and health sciences0302 clinical medicineFibrinolytic AgentsFibrinolysismedicineHumansRadiology Nuclear Medicine and imagingThrombolytic TherapyCerebral HemorrhageIntracerebral hemorrhageUrokinaseRadiological and Ultrasound Technologybusiness.industryUltrasoundThrombosisThrombolysismedicine.diseaseCombined Modality TherapyUrokinase-Type Plasminogen ActivatorIn vitroCatheterAnesthesiaTenecteplasebusiness030217 neurology & neurosurgerymedicine.drugUltrasound in medicinebiology
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The history of chemical enrichment in the intracluster medium from cosmological simulations

2017

The distribution of metals in the intracluster medium (ICM) of galaxy clusters provides valuable information on their formation and evolution, on the connection with the cosmic star formation and on the effects of different gas processes. By analyzing a sample of simulated galaxy clusters, we study the chemical enrichment of the ICM, its evolution, and its relation with the physical processes included in the simulation and with the thermal properties of the core. These simulations, consisting of re-simulations of 29 Lagrangian regions performed with an upgraded version of the SPH GADGET-3 code, have been run including two different sets of baryonic physics: one accounts for radiative coolin…

Active galactic nucleusCosmology and Nongalactic Astrophysics (astro-ph.CO)Radiative coolingGalaxies:clusters:general; Galaxies:clusters:Intracluster medium; Methods: numerical; Astronomy and Astrophysics; Space and Planetary ScienceMetallicityFOS: Physical sciencesclusters:Intracluster medium [Galaxies]AstrophysicsAstrophysics::Cosmology and Extragalactic Astrophysics01 natural sciencesSmoothed-particle hydrodynamicsclusters:general [Galaxies]Intracluster medium0103 physical sciencesGalaxies:clusters:Intracluster medium010303 astronomy & astrophysicsGalaxy clusterAstrophysics::Galaxy AstrophysicsPhysicsnumerical [Methods]Methods: numerical010308 nuclear & particles physicsStar formationAstronomyAstronomy and AstrophysicsAstronomy and AstrophysicAstrophysics - Astrophysics of GalaxiesGalaxies:clusters:generalSupernova13. Climate actionSpace and Planetary ScienceAstrophysics of Galaxies (astro-ph.GA)Astrophysics - Cosmology and Nongalactic Astrophysics
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