Search results for "Image processing"

Putting molecules in their place.

2014

Each class of microscope is limited to imaging specific aspects of cell structure and/or molecular organization. However, imaging the specimen by complementary microscopes and correlating the data can overcome this limitation. Whilst not a new approach, the field of correlative imaging is currently benefitting from the emergence of new microscope techniques. Here we describe the correlation of cryogenic fluorescence tomography (CFT) with soft X‐ray tomography (SXT). This amalgamation of techniques integrates 3D molecular localization data (CFT) with a high‐resolution, 3D cell reconstruction of the cell (SXT). Cells are imaged in both modalities in a near‐native, cryopreserved state. Here we…

BIOfid dataset: publishing a German gold standard for named entity recognition in historical biodiversity literature

2019

The Specialized Information Service Biodiversity Research (BIOfid) has been launched to mobilize valuable biological data from printed literature hidden in German libraries for over the past 250 years. In this project, we annotate German texts converted by OCR from historical scientific literature on the biodiversity of plants, birds, moths and butterflies. Our work enables the automatic extraction of biological information previously buried in the mass of papers and volumes. For this purpose, we generated training data for the tasks of Named Entity Recognition (NER) and Taxa Recognition (TR) in biological documents. We use this data to train a number of leading machine learning tools and c…

Quantitative comparison of motion history image variants for video-based depression assessment

2017

Abstract Depression is the most prevalent mood disorder and a leading cause of disability worldwide. Automated video-based analyses may afford objective measures to support clinical judgments. In the present paper, categorical depression assessment is addressed by proposing a novel variant of the Motion History Image (MHI) which considers Gabor-inhibited filtered data instead of the original image. Classification results obtained with this method on the AVEC’14 dataset are compared to those derived using (a) an earlier MHI variant, the Landmark Motion History Image (LMHI), and (b) the original MHI. The different motion representations were tested in several combinations of appearance-based …

Local Directional Multi Radius Binary Pattern

2018

Face recognition becomes an important task performed routinely in our daily lives. This application is encouraged by the wide availability of powerful and low-cost desktop and embedded computing systems, while the need comes from the integration in too much real world systems including biometric authentication, surveillance, human-computer interaction, and multimedia management. This article proposes a new variant of LBP descriptor referred as Local Directional Multi Radius Binary Pattern (LDMRBP) as a robust and effective face descriptor. The proposed LDMRBP operator is built using new neighborhood topology and new pattern encoding scheme. The adopted face recognition system consists of th…

A new method for morphometric analysis of opal phytoliths from plants.

2014

Micro-morphometry has substantially gained ground in the field of phytolith analysis, but the comparability of results is limited due to the use of different methods. This paper presents a new, user-friendly method based on open-source software (FIJI) that is proposed as a step towards the introduction of a standard method. After obtaining a mask of a phytolith by making a digital drawing, 27 commonly used variables of size and shape are measured automatically. This method is not only useful for phytolith analysis, but may also be used for other fields of morphometric research. Users can furthermore customize the software tool when additional variables are required.

Temperature-induced microstructural changes in shells of laboratory-grown Arctica islandica (Bivalvia).

2021

Bivalve shells are increasingly used as archives for high-resolution paleoclimate analyses. However, there is still an urgent need for quantitative temperature proxies that work without knowledge of the water chemistry–as is required for δ18O-based paleothermometry–and can better withstand diagenetic overprint. Recently, microstructural properties have been identified as a potential candidate fulfilling these requirements. So far, only few different microstructure categories (nacreous, prismatic and crossed-lamellar) of some short-lived species have been studied in detail, and in all such studies, the size and/or shape of individual biomineral units was found to increase with water temperat…

PREPARATION AND CHARACTERIZATION OF BIOPOLYMERIC POROUS STRUCTURES FOR ADVANCED APPLICATIONS

Porous biopolymers received an increasing academic and industrial interest finding application in several fields such as tissue engineering, bioprocess intensification and waste removal. Tissue engineering combines the knowledge of materials science and bioengineering in order to develop structures able to substitute and restore the normal function of injured or diseased tissues. In this context, polymeric 3D or 2D scaffolds are widely investigated as temporary cell guidance during the tissue restore. Porous biomaterials can offer a versatile and cost effective way for immobilization of filamentous microorganisms in submerged fermentation processes for the production of biologically active …

INTEGRAL/RXTE Observations of Cygnus X-1

2003

We present first results from contemporaneous observations of Cygnus X-1 with INTEGRAL and RXTE, made during INTEGRAL's performance verification phase in 2002 November and December. Consistent with earlier results, the 3-250 keV data are well described by Comptonization spectra from a Compton corona with a temperature of kT~50-90 keV and an optical depth of tau~1.0-1.3 plus reflection from a cold or mildly ionized slab with a covering factor of Omega/2pi~0.2-0.3. A soft excess below 10 keV, interpreted as emission from the accretion disk, is seen to decrease during the 1.5 months spanned by our observations. Our results indicate a remarkable consistency among the independently calibrated de…

A Robust Generic Method for Grid Detection in White Light Microscopy Malassez Blade Images in the Context of Cell Counting

2015

AbstractIn biology, cell counting is a primary measurement and it is usually performed manually using hemocytometers such as Malassez blades. This work is tedious and can be automated using image processing. An algorithm based on Fourier transform filtering and the Hough transform was developed for Malassez blade grid extraction. This facilitates cell segmentation and counting within the grid. For the present work, a set of 137 images with high variability was processed. Grids were accurately detected in 98% of these images.

Blind deconvolution using TV regularization and Bregman iteration

2005

In this paper we formulate a new time dependent model for blind deconvolution based on a constrained variational model that uses the sum of the total variation norms of the signal and the kernel as a regularizing functional. We incorporate mass conservation and the nonnegativity of the kernel and the signal as additional constraints. We apply the idea of Bregman iterative regularization, first used for image restoration by Osher and colleagues [S.J. Osher, M. Burger, D. Goldfarb, J.J. Xu, and W. Yin, An iterated regularization method for total variation based on image restoration, UCLA CAM Report, 04-13, (2004)]. to recover finer scales. We also present an analytical study of the model disc…