Search results for "Isothermal"

showing 10 items of 212 documents

Electrochemical detection of the 2-isobutyl-3-methoxypyrazine model odorant based on odorant-binding proteins: The proof of concept

2014

Abstract We developed an electrochemical assay for the detection of odorant molecules based on a rat odorant-binding protein (rOBP3). We demonstrated that rOBP3 cavity binds 2-methyl-1,4-naphtoquinone (MNQ), an electrochemical probe, as depicted from the decrease of its electrochemical signal, and deduced the dissociation constant, Kd MNQ  = 0.5(± 0.2) μM. The amount of MNQ displaced from rOBP3 by 2-isobutyl-3-methoxypyrazine (IBMP), a model odorant molecule, was measured using square-wave voltammetry. The release of MNQ by competition led to an increase of the electrochemical response. In addition, this method allowed determination of the dissociation constant of rOBP3 for IBMP, Kd IBMP  =…

Models MolecularIsothermal microcalorimetryOdorant bindingBiophysicsAnalytical chemistryCalorimetryReceptors OdorantElectrochemistryBinding CompetitiveCaffeic AcidsElectrochemistryPhysical and Theoretical ChemistryVoltammetryBinding SitesChemistryVitamin K 3Electrochemical TechniquesGeneral MedicineCombinatorial chemistryFluorescenceRecombinant ProteinsDissociation constantImmobilized ProteinsSpectrometry FluorescencePyrazinesCalibrationTitrationBiosensorBioelectrochemistry
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2NH and 3OH are crucial structural requirements in sphingomyelin for sticholysin II binding and pore formation in bilayer membranes.

2013

AbstractSticholysin II (StnII) is a pore-forming toxin from the sea anemone Stichodactyla heliantus which belongs to the large actinoporin family. The toxin binds to sphingomyelin (SM) containing membranes, and shows high binding specificity for this lipid. In this study, we have examined the role of the hydrogen bonding groups of the SM long-chain base (i.e., the 2NH and the 3OH) for StnII recognition. We prepared methylated SM-analogs which had reduced hydrogen bonding capability from 2NH and 3OH. Both surface plasmon resonance experiments, and isothermal titration calorimetry measurements indicated that StnII failed to bind to bilayers containing methylated SM-analogs, whereas clear bind…

Models MolecularPore Forming Cytotoxic ProteinsMembrane permeabilizationLipid BilayersBiophysicsCalorimetryta3111Biochemistrychemistry.chemical_compoundCnidarian VenomsAnimalsComputer SimulationLipid bilayerta116Binding selectivityUnilamellar LiposomesPhosphocholineBinding SitesMolecular StructureChemistryHydrogen bondVesicleta1182Isothermal titration calorimetryHydrogen BondingCell BiologySurface Plasmon ResonanceProtein Structure TertiarySphingomyelinsKineticsMembraneSea AnemonesBiochemistryMolecular dockingIsothermal titration calorimetryBiophysicsPhosphatidylcholinesSphingomyelinProtein BindingBiochimica et biophysica acta
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Mona/Gads SH3C binding to hematopoietic progenitor kinase 1 (HPK1) combines an atypical SH3 binding motif, R/KXXK, with a classical PXXP motif embedd…

2004

Hematopoietic progenitor kinase 1 (HPK1) is implicated in signaling downstream of the T cell receptor. Its non-catalytic, C-terminal half contains several prolinerich motifs, which have been shown to interact with different SH3 domain-containing adaptor proteins in vitro. One of these, Mona/Gads, was also shown to bind HPK1 in mouse T cells in vivo. The region of HPK1 that binds to the Mona/Gads C-terminal SH3 domain has been mapped and shows only very limited similarity to a recently identified high affinity binding motif in SLP-76, another T-cell adaptor. Using isothermal titration calorimetry and x-ray crystallography, the binding of the HPK1 motif to Mona/Gads SH3C has now been characte…

Models MolecularTime FactorsProtein ConformationAmino Acid MotifsMolecular Sequence DataPlasma protein bindingBiologyCalorimetryProtein Serine-Threonine KinasesCrystallography X-RayBiochemistrySH3 domainProtein Structure Secondarysrc Homology DomainsMiceProtein structureAnimalsHumansAmino Acid SequenceMolecular BiologyPeptide sequencePolyproline helixAdaptor Proteins Signal TransducingSequence Homology Amino AcidSignal transducing adaptor proteinIsothermal titration calorimetryCell BiologyPhosphoproteinsCell biologyProtein Structure TertiaryCrystallographyKineticsPXXP MotifCarrier ProteinsPeptidesProtein BindingThe Journal of biological chemistry
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Non-Isothermal Mathematical Model of Wood and Paper Drying

2002

A mathematical model of wood or paper drying based on a detailed consideration of both heat and moisture transport phenomena is proposed. By averaging we express the model as a sequence of initial value problems for systems of two first order nonlinear ordinary differential equations. This mathematical model makes it possible to efficiently investigate the drying process of a thin wood plate or paper sheet for varying temperature and humidity conditions in the surroundings. In particular, we have considered the optimization of the heat regime over a series of steam-heated cylinders in a papermaking machine.

MoistureSeries (mathematics)Scientific methodPapermakingInitial value problemHumidityMechanicsTransport phenomenaPhysics::Atmospheric and Oceanic PhysicsIsothermal processMathematics
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Partial molar volumes and compressibilities of alkyltrimethylammonium bromides

1990

Density and ultrasound measurements were performed for dodecyl- and tetradecyltrimethylammonium bromide at 15, 25 and 35°C and for hexadecyltrimethylammonium bromide at 25, 35 and 45°C over a wide concentration region. From these and previously reported data, partial molar volumes and isentropic and isothermal compressibilities were derived as a function of the surfactant concentration. It is shown that by increasing the surfactant concentration the apparent molar volumes and compressibilities increase according to the expected behavior of surfactant solutions. However, anomalies are displayed in plots of apparent molar compressibility of tetradecyltrimethylammonium bromide and of the speed…

MolarChromatographyIsentropic processChemistryBiophysicsThermodynamicsBiochemistryIsothermal processMolar volumeVolume (thermodynamics)Pulmonary surfactantSpeed of soundCompressibilityPhysical and Theoretical ChemistryMolecular BiologyJournal of Solution Chemistry
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Quantitative Analysis of the Interactions of Metal Complexes and Amphiphilic Systems: Calorimetric, Spectroscopic and Theoretical Aspects.

2022

Metals and metal-based compounds have many implications in biological systems. They are involved in cellular functions, employed in the formation of metal-based drugs and present as pollutants in aqueous systems, with toxic effects for living organisms. Amphiphilic molecules also play important roles in the above bio-related fields as models of membranes, nanocarriers for drug delivery and bioremediating agents. Despite the interest in complex systems involving both metal species and surfactant aggregates, there is still insufficient knowledge regarding the quantitative aspects at the basis of their binding interactions, which are crucial for extensive comprehension of their behavior in sol…

Molecular dynamics simulationsSpeciationCalorimetryBiochemistryBiological membraneAmphiphilic systemsKineticsMetal complexesSpectrophotometrySettore CHIM/03 - Chimica Generale E InorganicaCoordination ComplexesMetalsSolution thermodynamicsDensity functional theory calculationsDrug deliveryIsothermal titration calorimetryThermodynamicsMolecular Biologymetal complexes; amphiphilic systems; drug delivery; biological membrane; solution thermodynamics; speciation; isothermal titration calorimetry; spectrophotometry; molecular dynamics simulations; density functional theory calculationsBiomolecules
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Vapor phase epitaxy of Hg1−xCdxI2 layers on CdTe substrates

1997

Vapor phase epitaxy (VPE) has been studied to grow Hg1 − xCdxI2 epitaxial layers on CdTe bulk substrates. The effect of the VPE growth conditions on the morphology, composition and crystalline quality of Hg1 − xCdxI2CdTe heterostructures has been investigated. It has been shown that 10–30 μm thick Hg1 − xCdxI2 layers can be successfully grown using an α-HgI2 polycrystalline source under isothermal conditions at a temperature in the range 170–240°C for the time period 20–50 h. Interestingly, the VPE growth was found to consist of two successiv stages with different kinetics as follows: (1) a fast growth of an HgI2 platelet layer on the CdTe substrate surface and (2) a slow growth of an Hg1 −…

Morphology (linguistics)ChemistryStereochemistryKineticsAnalytical chemistryHeterojunctionCondensed Matter PhysicsEpitaxyIsothermal processCadmium telluride photovoltaicsInorganic ChemistryMaterials ChemistryCrystalliteLayer (electronics)Journal of Crystal Growth
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Morphology modification of polymer-filled nanocomposites subjected to non-isothermal elongational flow

2010

Morphology modificationpolymer-filled nanocompositenon-isothermal elongational flow
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Thermal Effects of Water Intrusion in Hydrophobic Nanoporous Materials.

2009

Liquid water intrusion in hydrophobic nanoporous silicalite-1, a pure siliceous zeolite, in isothermal conditions under high pressure produces an endothermic effect. After intrusion, confined water in zeolite pores is in a different state from that of the liquid bulk water. Such forced intrusion also chemically modifies the material and tends to render it slightly more hydrophilic.

NanostructureSurface PropertiesInorganic chemistry02 engineering and technologyCalorimetry010402 general chemistry01 natural sciencesBiochemistryEndothermic processCatalysisIsothermal process[PHYS.PHYS.PHYS-CHEM-PH] Physics [physics]/Physics [physics]/Chemical Physics [physics.chem-ph]Colloid and Surface ChemistryThermalPressureParticle SizeZeolitePorosityComputingMilieux_MISCELLANEOUSNanoporousChemistryTemperatureWaterGeneral Chemistry021001 nanoscience & nanotechnology0104 chemical sciencesNanostructures[ PHYS.PHYS.PHYS-CHEM-PH ] Physics [physics]/Physics [physics]/Chemical Physics [physics.chem-ph]Chemical engineeringZeolitesParticle size[PHYS.PHYS.PHYS-CHEM-PH]Physics [physics]/Physics [physics]/Chemical Physics [physics.chem-ph]0210 nano-technologyHydrophobic and Hydrophilic InteractionsPorosity
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IDEA: interface dynamics and energetics algorithm.

2007

IDEA, interface dynamics and energetics algorithm, was implemented, in FORTRAN, under different operating systems to mimic dynamics and energetics of elementary events involved in interfacial processes. The code included a parallel elaboration scheme in which both the stochastic and the deterministic components, involved in the developed physical model, worked simultaneously. IDEA also embodied an optionally running VISUAL subroutine, showing the dynamic energy changes caused by the surface events, e.g., occurring at the gas-solid interface. Monte Carlo and ordinary differential equation system subroutines were employed in a synergistic way to drive the occurrence of the elementary events a…

Parallel algorithmsInterface (Java)FortranComputer scienceSubroutineMonte Carlo methodOdeMolecular modelingGeneral ChemistryIsothermal processMonte Carlo methodComputational MathematicsOrdinary differential equationStatistical physicscomputerAlgorithmOrdinary differential equationEnergy (signal processing)computer.programming_languageJournal of computational chemistry
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