Search results for "LINE"

showing 10 items of 31271 documents

Selection for reproduction under short photoperiods changes diapause-associated traits and induces widespread genomic divergence.

2019

The work has been supported by the Academyof Finland to A.H. (project 267244) and Natural Environment Research Council (NERC) funding (NE/J020818/1 to M.G.R.; NE/L501852/1 to R.A.W.W.). The incidence of reproductive diapause is a critical aspect of life history in overwintering insects from temperate regions. Much has been learned about the timing, physiology and genetics of diapause in a range of insects, but how the multiple changes involved in this and other photoperiodically regulated traits are inter-related is not well understood. We performed quasinatural selection on reproduction under short photoperiods in a northern fly species, Drosophila montana, to trace the effects of photoper…

0106 biological sciencesPhysiology030310 physiologyQH301 BiologyCircadian clockGenome Insect01 natural sciencestalvehtiminenkylmänkestävyyscircadian clockmedia_commonvuorokausirytmi0303 health sciencesluonnonvalintagenome analysesReproductionPhenotypeAdaptation PhysiologicalCircadian RhythmCold TemperatureDrosophila melanogasterPhenotypeFemaleReproductionLocomotionendocrine systemmahlakärpäsetPeriod (gene)media_common.quotation_subjectPhotoperiodZoologyreproductive diapausefotobiologiaAquatic ScienceDiapauseBiology010603 evolutionary biology03 medical and health sciencesQH301Quantitative Trait Heritablephotoperiodic timerAnimalsCircadian rhythmMolecular BiologyGeneEcology Evolution Behavior and SystematicsSelection (genetic algorithm)Critical day lenghtGenetic VariationDAScold tolerancelisääntyminenDiapauseChromosomes Insectcritical day lengthInsect ScienceperimähyönteisetLinear ModelsAnimal Science and ZoologyThe Journal of experimental biology
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Underwater high frequency noise: Biological responses in sea urchin Arbacia lixula (Linnaeus, 1758)

2020

Marine life is extremely sensitive to the effects of environmental noise due to its reliance on underwater sounds for basic life functions, such as searching for food and mating. However, the effects on invertebrate species are not yet fully understood. The aim of this study was to determine the biochemical responses of Arbacia lixula exposed to high-frequency noise. Protein concentration, enzyme activity (esterase, phosphatase and peroxidase) and cytotoxicity in coelomic fluid were compared in individuals exposed for three hours to consecutive linear sweeps of 100 to 200 kHz lasting 1 s, and control specimens. Sound pressure levels ranged between 145 and 160 dB re 1μPa. Coelomic fluid was …

0106 biological sciencesPhysiologyPhosphataseZoology01 natural sciencesBiochemistryEsteraseHemolysis03 medical and health sciencesbiology.animalAnimalsHomeostasisHSP70 Heat-Shock ProteinsMatingSettore BIO/06 - Anatomia Comparata E CitologiaMolecular BiologySea urchinArbacia lixulaHSP70030304 developmental biologyInvertebrateCell ProliferationPeroxidaseArbacia0303 health sciencesbiologyEchinoderm010604 marine biology & hydrobiologyEsterasesMarine invertebrateMarine invertebratesbiology.organism_classificationAlkaline PhosphataseAcoustic stimuluEnzyme assayCoelomomycesBody Fluidsbiology.proteinMetabolomePhysiological stress.Noise
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Membrane glycerolipid remodeling triggered by nitrogen and phosphorus starvation in Phaeodactylum tricornutum.

2014

International audience; Diatoms constitute a major phylum of phytoplankton biodiversity in ocean water and freshwater ecosystems. They are known to respond to some chemical variations of the environment by the accumulation of triacylglycerol, but the relative changes occurring in membrane glycerolipids have not yet been studied. Our goal was first to define a reference for the glycerolipidome of the marine model diatom Phaeodactylum tricornutum, a necessary prerequisite to characterize and dissect the lipid metabolic routes that are orchestrated and regulated to build up each subcellular membrane compartment. By combining multiple analytical techniques, we determined the glycerolipid profil…

0106 biological sciencesPhysiologyPlant ScienceThylakoids01 natural sciencesPhaeodactylum tricornutumTranscriptomeMGDGNutrientnutrient starvationLipids metabolismSettore BIO/04 - Fisiologia VegetaleDigalactosyldiacylglycerolPhospholipids0303 health sciencesbiologyNitrogen starvationmicroalgaeMonogalactosyldiacyglycerolPhosphorusArticlesAdaptation PhysiologicalBiochemistryThylakoidSulfoquinovosyldiacylglycerollipids (amino acids peptides and proteins)DGDGNitrogenchemistry.chemical_elementlipidsMembrane Lipids03 medical and health sciencesSQDG[SDV.BBM] Life Sciences [q-bio]/Biochemistry Molecular BiologyGenetics[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular Biology14. Life underwaterPhaeodactylum tricornutumTriglycerides030304 developmental biologyDiatomsMembranesGene Expression ProfilingPhosphorusfungiPhosphorus starvationGlycerolipidsLipid metabolismmetabolic pathwaybiology.organism_classificationMetabolic pathwayPhosphatidylcholineDiatomchemistryPhytoplanktonLipidomics010606 plant biology & botany
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Risk of predation makes foragers less choosy about their food.

2017

18 pages; International audience; Animals foraging in the wild have to balance speed of decision making and accuracy of assessment of a food item's quality. If resource quality is important for maximizing fitness, then the duration of decision making may be in conflict with other crucial and time consuming tasks, such as anti-predator behaviours or competition monitoring. Individuals facing the risk of predation and/or competition should adjust the duration of decision making and, as a consequence, their level of choosiness for resources. When exposed to predation, the forager could either maintain its level of choosiness for food items but accept a reduction in the amount of food items con…

0106 biological sciencesPhysiologylcsh:MedicinePredationSocial SciencesKaplan-Meier EstimateChoice Behavior01 natural sciencesPredationCognitionMathematical and Statistical TechniquesBeetlesMedicine and Health Sciences[ SDV.EE.IEO ] Life Sciences [q-bio]/Ecology environment/SymbiosisPsychologyForagingDecision-makinglcsh:Sciencemedia_common2. Zero hungerMultidisciplinaryEcologyAnimal BehaviorEcology05 social sciencesEukaryotaPlantsTrophic InteractionsInsectsCommunity EcologyPhysical SciencesSeedsStatistics (Mathematics)Research ArticleRiskOpportunity costArthropodaMovementmedia_common.quotation_subjectDecision MakingForagingBiologyResearch and Analysis Methods010603 evolutionary biologyIntraspecific competitionCompetition (biology)Food PreferencesAnimals0501 psychology and cognitive sciencesQuality (business)050102 behavioral science & comparative psychologyStatistical MethodsBehavior[ SDE.BE ] Environmental Sciences/Biodiversity and Ecologylcsh:REcology and Environmental SciencesCognitive PsychologyFood ConsumptionOrganismsBiology and Life SciencesInterspecific competitionInvertebratesFoodPredatory BehaviorCognitive Sciencelcsh:QWeeds[SDE.BE]Environmental Sciences/Biodiversity and EcologyPhysiological ProcessesZoologyMathematicsNeuroscienceGeneralized Linear ModelDemography[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosis
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Otolith fingerprints reveals potential pollution exposure of newly settled juvenile Sparus aurata

2020

Abstract Coastal ecosystems are increasingly threatened by a wide range of human activities. Fish otolith chemistry, by creating a unique specific signature, can be used as a natural tag for determining life stage dispersal, spatial connectivity and population structure. In this study, we tested whether differences in otolith composition among juveniles of gilthead sea bream, Sparus aurata, could enable their proper allocation to polluted areas based on higher concentrations of elements related to contaminants. Otoliths were embedded, sectioned and analysed by LA-ICP-MS in line scan mode. Multivariate analysis confirmed clear separation between sites and elements. Samples from the site unde…

0106 biological sciencesPollutionRange (biology)media_common.quotation_subject010501 environmental sciencesAquatic ScienceOceanography01 natural sciencesOtolithic MembranemedicineAnimalsJuvenileEcosystemEcosystem0105 earth and related environmental sciencesmedia_commonOtolith010604 marine biology & hydrobiologyPollutionSea BreamFisheryJuveniles Otoliths chemistry Sparus aurata Nurseries Pollution Adriatic Seamedicine.anatomical_structureThreatened speciesBiological dispersalEnvironmental PollutionLine scanMarine Pollution Bulletin
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Conservation implications of change in antipredator behavior in fragmented habitat: Boreal rodent, the bank vole, as an experimental model

2015

Abstract Habitat fragmentation is known to cause population declines but the mechanisms leading to the decline are not fully understood. Fragmentation is likely to lead to changes in predation risk, which may cause behavioral responses with possible population level consequences. It has recently been shown that the awareness of predator presence, resulting in a fear response, strongly affects behavior and physiology of the prey individuals. Costs arising from fear may be as important for the prey population size as the direct killing of prey. We tested how predation risk in the form of scent of a specialist predator, the least weasel (Mustela nivalis nivalis), affects bank vole (Myodes glar…

0106 biological sciencesPopulationMyodes = Clethrionomys glareolus010603 evolutionary biology01 natural sciencesPredationindirect predationeducationpredator prey interactionEcology Evolution Behavior and SystematicsNature and Landscape Conservationeducation.field_of_studyHabitat fragmentationbiologyEcologyPopulation sizebreeding suppression15. Life on landbiology.organism_classification010601 ecologyBank volePopulation declineHabitatta1181fearVoleBiological Conservation
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Ten principles for conservation translocations of threatened wood-inhabiting fungi

2020

Abstract Unlike for many other organism groups, conservation translocations of fungi are still rare. Encouraged by recent successful translocations, there is a growing interest in applying this conservation tool to threatened wood-inhabiting fungi. When combined with other conservation or restoration measures, translocation can be an effective measure for preventing further population decline in the short term, and species extinctions in the long term. Translocations can be appropriate for rare and specialist fungal species that occur as small local populations in isolated patches across fragmented landscapes, where there is a low likelihood of successful dispersal between distant host tree…

0106 biological sciencesPrecautionary principleSpecies complexExtinctionEcologyEcologyEcological ModelingPlant Science15. Life on landBiology010603 evolutionary biology01 natural sciencesPopulation declineHabitat destructionThreatened speciesBiological dispersalEcology Evolution Behavior and SystematicsOrganism010606 plant biology & botanyFungal Ecology
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The gypsy database (GyDB) of mobile genetic elements: release 2.0

2011

This article introduces the second release of the Gypsy Database of Mobile Genetic Elements (GyDB 2.0): a research project devoted to the evolutionary dynamics of viruses and transposable elements based on their phylogenetic classification (per lineage and protein domain). The Gypsy Database (GyDB) is a long-term project that is continuously progressing, and that owing to the high molecular diversity of mobile elements requires to be completed in several stages. GyDB 2.0 has been powered with a wiki to allow other researchers participate in the project. The current database stage and scope are long terminal repeats (LTR) retroelements and relatives. GyDB 2.0 is an update based on the analys…

0106 biological sciencesProtein domainretroelementsLineage (evolution)[SDV]Life Sciences [q-bio]Retroviridae ProteinsCaulimoviridaeEukaryote evolutioncomputer.software_genrephylogeny01 natural sciencesDatabases GeneticRefSeqPhylogenyPriority journalbase de données0303 health sciencesRetrovirusPhylogenetic treeDatabaseSequence analysisdatabases geneticArticlesClassificationChemistryGenetic lineRetroelementsGenetic databaseComputer programBiologyArticleMobile genetic element03 medical and health sciencesLong terminal repeatWeb pagephylogénieVirus proteinGeneticsLife Science[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyAccess to informationTransposon030304 developmental biologyretroelements;phylogeny;software;terminal repeat sequences;databases geneticHidden Markov modelCauliflower mosaic virusCaulimovirussoftwareRetroposonTerminal Repeat SequencesDNA structureInterspersed Repetitive Sequencesterminal repeat sequencesNonhumanRetroviridaeData analysis softwareGenetic variabilityMobile genetic elementscomputerLENGUAJES Y SISTEMAS INFORMATICOSSoftware010606 plant biology & botanyPhylogenetic nomenclaturePhylogenetic tree
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The use of ecological traits in extinction risk assessments: A case study on geometrid moths

2008

Identifying ecological traits that make some species more vulnerable than others is vital for predictive conservation science. By identifying these predisposing traits we can predict which species are most prone to decline and gain an understanding of the reasons behind the decline. The aim of this study was to determine the ecological traits that best predict extinction risk and distribution change in Finnish geometrid moths and to develop an understanding of the biological connections between these traits and threats. We found that larval specificity, overwintering stage and flight period length predicted distribution change and extinction risk. There was also an interaction effect betwee…

0106 biological sciencesRisk analysisExtinctionEcology010604 marine biology & hydrobiologyEcology (disciplines)Latent extinction risksocial sciencesBiology010603 evolutionary biology01 natural scienceshumanitiesTaxonIUCN Red List14. Life underwaterRisk assessmentEcology Evolution Behavior and SystematicsOverwinteringNature and Landscape ConservationBiological Conservation
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Bitterling Populations in The Sighisoara-Târnava Mare Natura 2000 Site ‒ A Support System for Management Decisions

2016

Abstract The predominant threats to the Bitterling populations in the Sighisoara-Târnava Mare Natura 2000 site are the hydro technical modifications of the river channels, organic contamination and illegal fishing. ADONIS:CE is applied commonly for business processes modelling, however, in this study case was applied in an ecology/biology sphere of interest. The authors acquired a Bitterling model which contained all of the identified habitat species’ necessities, the specific indicators that give good preservation status and the present pressures and threats. The keeping of the riverbed morphodynamics is especially necessary - the meanders existence is significant for the aquatic mollusc s…

0106 biological sciencesRiver ecosystemEcology010604 marine biology & hydrobiologyAquatic ecosystemEcology (disciplines)010501 environmental sciencesBiology01 natural sciencesNatural (archaeology)HabitatSupport systemNatura 2000Beach morphodynamics0105 earth and related environmental sciencesManagement of Sustainable Development
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