Search results for "Meri"

showing 10 items of 7596 documents

Phylogeography and Molecular Evolution of Potato virus Y

2012

Potato virus Y (PVY) is an important plant pathogen, whose host range includes economically important crops such as potato, tobacco, tomato, and pepper. PVY presents three main strains (PVYO, PVYN and PVYC) and several recombinant forms. PVY has a worldwide distribution, yet the mechanisms that promote and maintain its population structure and genetic diversity are still unclear. In this study, we used a pool of 77 complete PVY genomes from isolates collected worldwide. After removing the effect of recombination in our data set, we used Bayesian techniques to study the influence of geography and host species in both PVY population structure and dynamics. We have also performed selection and…

0106 biological sciencesEvolutionary GeneticsAmino-acid sitesSelective constraintsPotyviruslcsh:Medicine01 natural sciencesAmino-Acid SitesRecombinant strainPlant RNA virusesNegative selectionMaximum-Likelihoodlcsh:Sciencepathologie végétaleSelective ConstraintsPhylogenyGenetics0303 health sciencesCoat proteinMultidisciplinaryNatural selectionVegetal BiologybiologyEcologyGenetic-structurePotyvirusfood and beveragesEuropePhylogeneticsVenous necrosisPhylogeographyPotato virus YBiogeographyVenous NecrosisSequence AnalysisResearch ArticlePlant RNA VirusesGenome ViralMicrobiologyEvolution Molecular03 medical and health sciencesGenetic-StructureMolecular evolutionVirologyMosaic-virus[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyEvolutionary SystematicsBiology030304 developmental biologySolanum tuberosumGenetic diversityEvolutionary BiologyMosaic virusHost (biology)Maximum-likelihoodlcsh:RComputational Biologyvirus à de la pomme de terreBayes Theoremlégumebiology.organism_classificationMutational analysisMosaic-VirusMutational AnalysisEvolutionary EcologyRecombinant StrainNorth Americalcsh:QBiologie végétalePopulation Genetics010606 plant biology & botany
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Study of a New Population of the Argentinian Endemic Species Riella choconensis Hässel (Riellaceae, Marchantiophyta) Reveals a Novel Anatomical Struc…

2019

A new population of the Argentinian endemic Riella choconensis Hässel (Riellaceae, Marchantiophyta) was discovered from a culture of sediments from the Laguna de los Juncos (Río Negro province, Argentina). This species was known previously from two nearby collections, made in 1984, in the type locality at the Ramos Mexía reservoir (Neuquén province) and was not recorded since. Fresh material from the new population enabled detailed morphological analyses, which are extensively described here, illustrated and compared to type material of the species. Based on the smooth female involucre, the species belongs to subgenus Riella Mont. However, cross-sections of this structure showed that R. cho…

0106 biological sciencesFLORISTIC STUDIESZoologyPlant ScienceAQUATIC LIVERWORTSBiology010603 evolutionary biology01 natural sciencesCiencias BiológicasGenusSOUTH AMERICAEndemismCiencias de las Plantas BotánicaEcology Evolution Behavior and SystematicsRiellaTHREATENED SPECIESbiology.organism_classificationCHOROLOGYThreatened speciesKey (lock)Type localityMarchantiophytaSubgenusCIENCIAS NATURALES Y EXACTASBRYOPHYTESConservación de la Biodiversidad010606 plant biology & botanyCryptogamie, Bryologie
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Morphological variations of crossed-lamellar ultrastructures of Glycymeris bimaculata (Bivalvia) serve as a marine temperature proxy

2020

Abstract Bivalve shells are among the most promising archives for high-resolution seawater temperature reconstructions. However, despite major research advances in bivalve sclerochronology over the past decades, estimating water temperature from shells remains a challenging task. This is largely because the most frequently used and widely accepted temperature proxy in bivalves, i.e., the shell oxygen isotope (δ18Oshell) value, also requires knowledge of changes in δ18O of the water (δ18Owater) in which the bivalve lived, which is rarely available for ancient environments. According to a few recent studies, the size and shape of individual biomineral units (BMUs) of the shell ultrastructure …

0106 biological sciencesGlycymeris010504 meteorology & atmospheric sciencesbiologyBrackish waterδ18O010604 marine biology & hydrobiologyGlycymeris bimaculataAquatic ScienceOceanographybiology.organism_classificationBivalvia01 natural sciencesIsotopes of oxygenOceanography13. Climate actionSclerochronologyPaleoclimatology14. Life underwaterGeology0105 earth and related environmental sciencestemperature proxy ; bivalve sclerochronology ; paleoclimatology ; ultrastructure ; nearshore environment ; Adriatic Sea
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An annotated checklist of freshwater Copepoda (Crustacea, Hexanauplia) from continental Ecuador and the Galapagos Archipelago.

2019

An annotated checklist of the free-living freshwater Copepoda recorded in different regions in Ecuador (including the Amazon, the Andes, the coastal region, and the Galapagos Islands) is here provided. We revised all published records, critically evaluated the validity of each taxon and provided short taxonomic and biogeographical remarks for each one. A total of 27 taxa have been reported, including species and records at the generic level only. The species and taxa identified only up to the generic level belong to five families and 14 genera. The Cyclopoida is the most diverse group with 16 records belonging to species (or identified to the generic level only) and eight genera, followed b…

0106 biological sciencesHexanaupliaSettore BIO/05 - ZoologiaBiodiversityCyclopoida01 natural sciencesCrustacealcsh:ZoologyBilaterialcsh:QL1-991species richnessHarpacticoidaCalanoidaInvertebratageography.geographical_feature_categorybiologyEcologyAmazon rainforestCephalornisHarpacticoidaBiodiversityNeotropicfreshwater CopepodaChecklistBiogeographyArchipelagoEcuadorCoelenterataNeotropicsArthropodaNephrozoa010607 zoologyProtostomiaCircumscriptional names of the taxon underCopepodaFaunistics & DistributionSystematicsgeographical distributionAnimaliaCalanoidaEcology Evolution Behavior and Systematicsgeography010604 marine biology & hydrobiologyCyclopoidaSouth Americabiology.organism_classificationTaxonNotchiaEcdysozoaAnimal Science and ZoologySpecies richnessCatalogues and ChecklistsAmericasMaxillopodaZooKeys
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Artemisia arborescens essential oil composition, enantiomeric distribution and antimicrobial activity from different wild populations from the Medite…

2016

International audience; Aerial parts of Artemisiaarborescens were collected from different sites of the Mediterranean area (southwestern Algeria and southern Italy) and the chemical composition of their essential oil (EO) extracted by hydrodistillation was studied by both gas chromatography (GC) equipped with an enantioselective capillary column and GC/mass spectrometry (GC/MS). The EOs obtained were tested against several Listeriamonocytogenes strains. Using GC and GC/MS, 41 compounds were identified, accounting for 96.0-98.8% of the total EO. All EOs showed a similar terpene profile, which was rich in chamazulene, -thujone, and camphor. However, the concentration of such compounds varied …

0106 biological sciencesListeriaBioengineeringMicrobial Sensitivity TestsSettore MED/42 - Igiene Generale E Applicata01 natural sciencesBiochemistry[ CHIM ] Chemical Scienceslaw.inventionTerpeneCamphorchemistry.chemical_compoundlawBotanyOils Volatile[CHIM]Chemical SciencesFood scienceMolecular BiologyEssential oilVolatile compositionbiologyChemotypeMediterranean RegionChemistryChamazuleneBiological activityStereoisomerismGeneral ChemistryGeneral Medicinebiology.organism_classificationArtemisia arborescensEnantiomeric distributionListeria monocytogenesAnti-Bacterial Agents0104 chemical sciences010404 medicinal & biomolecular chemistrySettore MED/18 - Chirurgia GeneraleArtemisiaItalyAlgeriaGram-negative bacteriaMolecular MedicineArtemisiaGas chromatographyEnantiomeric distribution Biological activity Gram-negative bacteria Volatile composition Listeria monocytogenes.010606 plant biology & botanySettore AGR/16 - Microbiologia Agraria
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Eimeria-parasites are associated with a lowered mother's and offspring's body condition in island and mainland populations of the bank vole.

2006

This study, based on correlative data, tests the hypothesis that infections withEimeriaspp. parasites exert a significant loss of fitness of bank voles (Clethrionomys glareolus) reflected in lower reproductive success and survival, declining host population densities and are associated positively with population size. The study was conducted in 20 mainland and 27 island populations in central Finland during May–September in 1999. Faecal samples showed that 28% of 767 individuals were infected withEimeriaspp. The presence ofEimeriaparasites was higher in dense mainland populations than in sparsely populated islands. Eimerian infections increased during the course of the breeding season, prob…

0106 biological sciencesLitter (animal)MalePopulationZoologyBreeding010603 evolutionary biology01 natural sciencesPopulation densityEimeriaRodent Diseases03 medical and health sciencesFecesCoccidiaPregnancySeasonal breederAnimalseducationFinland030304 developmental biologyPopulation Density0303 health scienceseducation.field_of_studybiologyReproductive successGeographyArvicolinaeCoccidiosisReproductionbiology.organism_classificationSurvival AnalysisBank voleInfectious DiseasesPregnancy Complications ParasiticAnimal Science and ZoologyParasitologyEimeriaFemaleParasitology
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Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA…

2020

Genetic variation is the fuel of evolution, with standing genetic variation especially important for short-term evolution and local adaptation. To date, studies of spatiotemporal patterns of genetic variation in natural populations have been challenging, as comprehensive sampling is logistically difficult, and sequencing of entire populations costly. Here, we address these issues using a collaborative approach, sequencing 48 pooled population samples from 32 locations, and perform the first continent-wide genomic analysis of genetic variation in European Drosophila melanogaster. Our analyses uncover longitudinal population structure, provide evidence for continent-wide selective sweeps, ide…

0106 biological sciencesMaleincipient sexual isolationQH301 BiologyAcclimatizationADNGenome Insect01 natural sciencesPopulation genomicsAdaptation; Clines; Demography; Population genomics; Selection; SNPs; Structural variants; Acclimatization; Altitude; Animals; DNA Viruses; Drosophila melanogaster; Europe; Genome Mitochondrial; Haplotypes; Insect Viruses; Male; Phylogeography; Polymorphism Single Nucleotide; Genome Insect; Genomic Structural Variation; Microbiota; Selection GeneticSDG 13 - Climate ActionComputingMilieux_MISCELLANEOUSeducation.field_of_study0303 health sciencesAltitude[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]PE&RCgeneettinen muunteluPhylogeographyDrosophila melanogasterLaboratory of GeneticsTransposable elementnorth-americanmahlakärpäsetSettore BIO/18 - GENETICAselectionLaboratorium voor Erfelijkheidsleeramino-acid polymorphism03 medical and health sciencesGeneticGeneticsAdaptation demographyMicrobiomeAdaptationPolymorphismeducationDrosophilaMolecular BiologySelectionEcology Evolution Behavior and SystematicsDemography[SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE]DNAchemistryEvolutionary biologyGenome MitochondrialGenomic Structural Variationinversion in(3r)payneAdaptationPopulation genomicsStructural variantsGenètica[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosisadaptation demographyCandidate genenucleotide polymorphismAcademicSubjects/SCI01180chemistry.chemical_compoundMelanogaster2. Zero hungerGenomebiologyMicrobiotaSingle NucleotideClinesclinesMitochondrialEuropepopulaatiogenetiikkatransposable elementsDrosophila melanogasterSNPsnatural-populationspopulation genomicsPopulationnext-generationDrosòfila melanogasterInsect Viruses010603 evolutionary biologyPolymorphism Single NucleotideQH301latitudinal clineGenetic variationAnimalsSelection GeneticSelection (genetic algorithm)DiscoveriesLocal adaptation030304 developmental biologylife-historyAcademicSubjects/SCI01130DNA Virusesstructural variantsDASbiology.organism_classificationHaplotypes13. Climate actionperimä[SDE.BE]Environmental Sciences/Biodiversity and EcologyInsectDNAMolecular Biology and Evolution
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The Mediterranean Sea hosts endemic haplotypes and a distinct population of the dolphinfish Coryphaena hippurus Linnaeus, 1758 (Perciformes, Coryphae…

2017

Abstract The dolphinfish, Coryphaena hippurus Linnaeus, 1758, is an important target species for Mediterranean artisanal, recreational and commercial fisheries but to date only scarce genetic data are available for its Mediterranean population(s). The genetic variation of Mediterranean dolphinfishes was thus investigated through the sequencing of fragments of the cytochrome c oxidase subunit 1 (COI) gene and the NADH dehydrogenase subunit 1 (ND1) mitochondrial DNA markers with the explicit aims of (i) testing for significant genetic differentiation of the Mediterranean vs . non-Mediterranean populations of the species, and (ii) investigating the possible presence of molecular structuring wi…

0106 biological sciencesMediterranean climateCoryphaenaeducation.field_of_studyGenetic diversitybiologyEcology010604 marine biology & hydrobiologyPopulationSettore BIO/05 - ZoologiaAquatic Sciencebiology.organism_classification010603 evolutionary biology01 natural sciencesMediterranean BasinPerciformesDolphinfishGenetic diversityMediterranean seaGenetic variationMediterranean SeaAlmeria-Oran fronteducationAtlantic Ocean
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Spatial variations in Ba/Cashell fingerprints of Glycymeris pilosa along the eastern Adriatic Sea

2020

Abstract The long living Glycymeris pilosa bivalve is an interesting target species for the sclerochronological research in the Mediterranean Sea. In this study, Ba/Cashell and Mg/Cashell variations were studied along the coast of the eastern Adriatic Sea. Specimens were collected alive by SCUBA and skin diving during several occasions in 2014, 2015 and 2016 from five sites including Pag, Pasman Channel, Cetina, Živogosce and Drace. Element-to-Cashell ratios were measured by LA-ICP-MS in line scan mode in three specimens of each site, ranging in age from 7 to 21. In addition, chemical analysis was conducted on three ontogenetically older specimens (68-97 years-old) from Drace. Mg/Cashell an…

0106 biological sciencesMediterranean climateDelta010504 meteorology & atmospheric sciencesbiology010604 marine biology & hydrobiologyGrowth dataPilosachemistry.chemical_elementBariumAquatic ScienceOceanographybiology.organism_classification01 natural sciencesMediterranean seachemistrySclerochronology ; Elements ; Barium ; Bivalve ; MediterraneanSclerochronologyPhysical geographyGlycymeris pilosa0105 earth and related environmental sciencesEstuarine, Coastal and Shelf Science
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Carvacrol activated biopolymeric foam: An effective packaging system to control the development of spoilage and pathogenic bacteria on sliced pumpkin…

2021

Abstract A commercial biodegradable starch-based polymer (Mater-Bi) was activated with carvacrol to develop a biodegradable and compostable polymer to be used in food packaging. Based on previous tests, carvacrol was added at 20 % weight of foam. MB foams, with and without carvacrol, were tested for their morphological characteristics, mechanical tests and kinetics of carvacrol release under refrigerated storage conditions. Carvacrol slightly increased the porosity of the foams, induced a reduction of the compressive elastic modulus (Ecom) of foamed MB from 6 to ∼ 3.4 MPa and a decrease of the tensile elastic modulus from ∼70 MPa to ∼16.5 MPa. Carvacrol release from the foam at 4 °C was alm…

0106 biological sciencesMicrobiology (medical)Polymers and PlasticsMelonStarchFood spoilageActive packagingBiopolymeric foamsSettore AGR/04 - Orticoltura E FloricolturaSpoilage and pathogenic bacteriamedicine.disease_cause01 natural sciencesAntibacterial propertiesBiomaterialsFood packagingchemistry.chemical_compound0404 agricultural biotechnologyListeria monocytogenesCarvacrol010608 biotechnologymedicineCarvacrolFood scienceSafety Risk Reliability and QualityFood model systemsbiologyChemistrySettore ING-IND/34 - Bioingegneria Industriale04 agricultural and veterinary sciencesbiology.organism_classification040401 food scienceFood packagingSettore ING-IND/22 - Scienza E Tecnologia Dei MaterialiIn vivo activityBacteriaSettore AGR/16 - Microbiologia AgrariaFood ScienceFood Packaging and Shelf Life
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