Search results for "Method"

showing 10 items of 13253 documents

A Monte Carlo study of diffusion in "living polymers"

1996

We report the first numeric experiments on diffusion in living polymers (polymers that can break and recombine reversibly, and are characterized by an exponential molecular weight distribution). In the simulation we use a modification of the bond fluctuation model which is known to reproduce the correct Rouse dynamics of polymer chains. The diffusion coefficient D reveals a Rouse-type behaviour D ∝ 1/L, where L is the average chain length of the polydisperse system. We also find a D ∝ exp [ − V/2kBT] dependence on the bond energy V, whereas at constant temperature the diffusion coefficient turns out to be inversely proportional, D ∝ ρ−1, to the monomer density of the system ρ in agreement w…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceMonte Carlo methodGeneral Physics and AstronomyThermodynamicsPolymerExponential functionCondensed Matter::Soft Condensed Matterchemistry.chemical_compoundMonomerchemistryMolar mass distributionStatistical physicsDiffusion (business)Bond energyConstant (mathematics)Europhysics Letters (EPL)
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Anomalous scaling of the critical temperature of unmixing with chain length for two-dimensional polymer blends

2003

The thermodynamics, structure and the chain configurations of symmetrical polymer mixtures confined into ultrathin films are studied by Monte Carlo simulations of the bond fluctuation model. It is shown that the Flory-Huggins–type scaling of the critical temperature (Tc ~ N) with chain length N in the bulk is replaced by a weaker increase, Tc ~ N1/2, in an ultrathin film, and this is interpreted in terms of geometric arguments. The pair-correlation function g(r) of monomers from different chains exhibits a pronounced correlation hole, and the density of intermolecular contacts zc decreases with N as zc ~ N−1/2.

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceMonte Carlo methodIntermolecular forceGeneral Physics and AstronomyThermodynamicsTwo-dimensional polymerPolymerCondensed Matter::Soft Condensed MatterChain (algebraic topology)chemistryPolymer blendConfined spaceScalingEurophysics Letters (EPL)
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Influence of chain stiffness on knottedness in single polymers.

2013

In the present article, we investigate and review the influence of chain stiffness on self-entanglements and knots in a single polymer chain with Monte Carlo simulations spanning good solvent, theta and globular phases. The last-named are of particular importance as a model system for DNA in viral capsids. Intriguingly, the dependence of knot occurrence and complexity with increasing stiffness is non-trivial, but can be understood with a few simple concepts outlined in the present article.

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceMonte Carlo methodMolecular ConformationStiffnessModel systemNanotechnologyPolymerDNABiochemistryMolecular conformationKnot (unit)BiopolymerschemistrymedicineSolventsNucleic Acid ConformationStatistical physicsmedicine.symptomBiochemical Society transactions
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Monte Carlo simulation studies of the interfaces between polymeric and other solids as models for fiber-matrix interactions in advanced composite mat…

1996

As a coarse-grained model for dense amorphous polymer systems interacting with solid walls (i.e., the fiber surface in a composite), the bond fluctuation model of flexible polymer chains confined between two repulsive surfaces is studied by extensive Monte Carlo simulations. Choosing a potential for the length of an effective bond that favors rather long bonds, the full temperature region from ordinary polymer melts down to the glass transition is accessible. It is shown that in the supercooled state near the glass transition an “interphase” forms near the walls, where the structure of the melt is influenced by the surface. This “interphase” already shows up in static properties, but also h…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials sciencePolymers and PlasticsOrganic ChemistryMonte Carlo methodMineralogyPolymerCondensed Matter PhysicsGyrationAmorphous solidCondensed Matter::Soft Condensed MatterInorganic ChemistrychemistryChemical physicsMaterials ChemistryRadius of gyrationSupercoolingGlass transitionConfined spaceMacromolecular Theory and Simulations
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Structure of bottle-brush polymers in solution: A Monte Carlo test of models for the scattering function

2008

Extensive Monte Carlo results are presented for a lattice model of a bottle-brush polymer under good solvent or Theta solvent conditions. Varying the side chain length, backbone length, and the grafting density for a rigid straight backbone, both radial density profiles of monomers and side chain ends are obtained, as well as structure factors describing the scattering from a single side chain and from the total bottle-brush polymer. To describe the structure in the interior of a very long bottle-brush, a periodic boundary condition in the direction along the backbone is used, and to describe effects due to the finiteness of the backbone length, a second set of simulations with free ends of…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceStatistical Mechanics (cond-mat.stat-mech)ScatteringMonte Carlo methodTheta solventGeneral Physics and AstronomyFOS: Physical sciencesPolymerCondensed Matter - Soft Condensed MatterMolecular physicsConvolutionCondensed Matter::Soft Condensed MatterchemistrySide chainPeriodic boundary conditionsSoft Condensed Matter (cond-mat.soft)Physical and Theoretical ChemistryCondensed Matter - Statistical MechanicsLattice model (physics)
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A fast Monte Carlo algorithm for studying bottle-brush polymers

2011

Obtaining reliable estimates of the statistical properties of complex macromolecules by computer simulation is a task that requires high computational effort as well as the development of highly efficient simulation algorithms. We present here an algorithm combining local moves, the pivot algorithm, and an adjustable simulation lattice box for simulating dilute systems of bottle-brush polymers with a flexible backbone and flexible side chains under good solvent conditions. Applying this algorithm to the bond fluctuation model, very precise estimates of the mean square end-to-end distances and gyration radii of the backbone and side chains are obtained, and the conformational properties of s…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMathematical optimizationComputer scienceMonte Carlo methodFOS: Physical sciencesGeneral Physics and AstronomyPolymerCondensed Matter - Soft Condensed MatterGyrationchemistryHardware and ArchitectureLattice (order)Side chainSoft Condensed Matter (cond-mat.soft)Statistical physicsStructure factorScalingMonte Carlo algorithmComputer Physics Communications
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Simulation of Copolymer Bottle-Brushes

2007

The structure of bottle-brush polymers with a rigid backbone and flexible side chains is studied in three dimensions, varying the grafting density, the side chain length, and the solvent quality. Some preliminary results of theoretical scaling considerations for one-component bottle-brush polymers in a good solvent are compared with Monte Carlo simulations of a simple lattice model. For the simulations a variant of the pruned-enriched Rosenbluth method (PERM) allowing for simultaneous growth of all side chains in the Monte Carlo sampling is employed. For a symmetrical binary (A,B) bottle-brush polymer, where two types (A,B) of flexible side chains are grafted with one chain end to the backb…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesPhase transitionLattice model (finance)Polymers and PlasticsOrganic ChemistryMonte Carlo methodPolymerCondensed Matter PhysicsCondensed Matter::Soft Condensed MatterchemistryMean field theoryChemical physicsMaterials ChemistrySide chainCylinderStatistical physicsScalingMacromolecular Symposia
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Simulations of phase transitions in macromolecular systems

2002

Abstract The study of phase transitions in concentrated solutions and melts of flexible or stiff polymers is a computational challenge for computer simulations, since already a single polymer coil exhibits nontrivial structure from the scale of a chemical bond (1 A) to the coil radius (100 A), and for the simulation of collective phenomena huge simulation boxes containing many polymers are required. A strategy to deal with this problem is the use of highly coarse-grained models on a lattice, such as the bond fluctuation model. Several studies employing such models will be briefly reviewed, e.g.: temperature-driven isotropic-nematic phase transition in concentrated solutions of semiflexible …

chemistry.chemical_classificationQuantitative Biology::BiomoleculesPhase transitionMaterials scienceComputer simulationMonte Carlo methodGeneral Physics and AstronomyPolymerCondensed Matter::Soft Condensed MatterchemistryChemical bondHardware and ArchitectureChemical physicsLattice (order)Polymer blendStatistical physicsScalingComputer Physics Communications
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Phase transitions of single polymer chains and of polymer solutions: insights from Monte Carlo simulations

2008

The statistical mechanics of flexible and semiflexible macromolecules is distinct from that of small molecule systems, since the thermodynamic limit can also be approached when the number of (effective) monomers of a single chain (realizable by a polymer solution in the dilute limit) is approaching infinity. One can introduce effective attractive interactions into a simulation model for a single chain such that a swollen coil contracts when the temperature is reduced, until excluded volume interactions are effectively canceled by attractive forces, and the chain conformation becomes almost Gaussian at the theta point. This state corresponds to a tricritical point, as the renormalization gro…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesPhase transitionMonte Carlo methodThermodynamicsStatistical mechanicsPolymerCondensed Matter PhysicsCondensed Matter::Soft Condensed MatterTricritical pointchemistryPhase (matter)Thermodynamic limitExcluded volumeGeneral Materials ScienceJournal of Physics: Condensed Matter
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Competition between liquid-crystalline ordering and glassy freezing in melts of semiflexible polymers: A monte carlo simulation

1999

We present results of a Monte Carlo simulation of dense melts of semiflexible polymers using the bond-fluctuation model. The chosen Hamiltonian increases the chain stiffness upon cooling which in turn leads to glass-transition like freezing of the polymer mobility. Employing an efficient simulation algorithm, which is able to equilibrate the simulated systems to lower temperature than the Rouse-type algorithm showing the glassy freezing, we are able to observe an isotropic-nematic phase transition. This transition lies above the glass transition temperature one would extrapolate from the observed freezing behavior.

chemistry.chemical_classificationQuantitative Biology::BiomoleculesPhase transitionPolymers and PlasticsChemistryLiquid crystallineOrganic ChemistryMonte Carlo methodThermodynamicsStiffnessPolymerCondensed Matter PhysicsCondensed Matter::Soft Condensed Mattersymbols.namesakeSimulation algorithmMaterials Chemistrymedicinesymbolsmedicine.symptomHamiltonian (quantum mechanics)Glass transitionMacromolecular Symposia
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