Search results for "Microbial community"

Microbial community characterization during anaerobic digestion of Scenedesmus spp. under mesophilic and thermophilic conditions

2017

[EN] Microbial communities were thoroughly characterized in a mesophilic anaerobic membrane bioreactor (AnMBR) and a thermophilic continuous stirred tank reactor (CSTR), which were both treating recalcitrant microalgal biomass dominated by Scenedesmus. 16S rRNA amplicon sequencing analysis was performed when the AnMBR achieved 70% algal biodegradation and revealed high microbial diversity, probably due to the high solid retention time (SRT) of the AnMBR configuration. The bacterial community consisted of Chloroflexi (27.9%), WWE1 (19.0%) and Proteobacteria (15.4%) as the major phyla, followed by Spirochaetes (7.7%), Bacteroidetes (5.9%) and Firmicutes (3.6%). These phyla are known to exhibi…

Water-extractable organic matter linked to soil physico-chemistry and microbiology at the regional scale

2015

10 pages; International audience; A better understanding of the links between dissolved organic matter and biogeochemical processes in soil could help in evaluating global soil dynamics. To assess the effects of land cover and parental material on soil biogeochemistry, we studied 120 soil samples collected from various ecosystems in Burgundy, France. The potential solubility and aromaticity of dissolved organic matter was characterised by pressurised hot-water extraction of organic carbon (PH-WEOC). Soil physico-chemical characteristics (pH, texture, soil carbon and nitrogen) were measured, as was the δ13C signature both in soils and in PH-WEOC. We also determined bacterial and fungal abund…

Microbial community analysis, influence of reactor hybridation and effect of the proportion of glycol ethers/ethanol mixtures in EGSB reactors

2018

Antecedentes La emisión de compuestos orgánicos volátiles (COVs) puede causar diferentes problemas en la salud pública y en el medio ambiente, actuando como contaminantes primarios y permitiendo la formación de contaminantes secundarios como el ozono troposférico. Debido a estos problemas, la emisión de COVs está limitada en muchos países tales como EEUU o los pertenecientes a la Unión Europea, en este caso regulado por la directiva 2010/75/EU. Debido al uso de disolventes en su proceso productivo, la industria flexográfica es uno de los sectores que más contribuye a la emisión de este tipo de compuestos, y las técnicas biológicas han sido consideradas como una de las mejores disponibles pa…

Combined metabolic activity within an atrazine-mineralizing community enriched from agrochemical factory soil

2007

Abstract The main objective of this work was to characterize an atrazine-mineralizing community originating from agrochemical factory soil, especially to elucidate the catabolic pathway and individual metabolic and genetic potentials of culturable members. A stable four-member bacterial community, characterized by colony morphology and 16S rDNA sequencing, was rapidly able to mineralize atrazine to CO 2 and NH 3 . Two primary organisms were identified as Arthrobacter species (ATZ1 and ATZ2) and two secondary organisms (CA1 and CA2) belonged to the genera Ochrobactrum and Pseudomonas, respectively. PCR assessment of atrazine-degrading genetic potential of the community, revealed the presence…

Agricultural management affects the response of soil bacterial community structure and respiration to water-stress

2013

International audience; Soil microorganisms are responsible for organic matter decomposition processes that regulate soil carbon storage and mineralisation to CO2. Climate change is predicted to increase the frequency of drought events, with uncertain consequences for soil microbial communities. In this study we tested the hypothesis that agricultural management used to enhance soil carbon stocks would increase the stability of microbial community structure and activity in response to water-stress. Soil was sampled from a long-term field trial with three soil carbon management systems and was used in a laboratory study of the effect of a dry wet cycle on organic C mineralisation and microbi…

"Role of Arbuscular Mycorrhizal Fungi in Nutrient Uptake and Growth of Durum Wheat"

Soil microbiome is involved at different levels in the food web, in bio-geochemical nutrient cycles and in several interactions with plants. Based on its key role in the agro-ecosystem processes, the soil microbiome has been identified as one of the principal factors in an agriculture addressed to the ecological intensification. Among the several relationships established between plants and soil microorganisms, arbuscular mycorrhizal (AM) symbiosis is the most widespread. Two out of three of all plant taxa (among others the main crops) are involved in the AM symbiosis which takes place between the plant root system and arbuscular mycorrhizal fungi (AMF), a monophyletic group of fungi belong…

MICROBIAL COMMUNITY CHANGES IN TNT SPIKED SOIL BIOREMEDIATION TRIAL USING BIOSTIMULATION, PHYTOREMEDIATION AND BIOAUGMENTATION

2013

Trinitrotoluene (TNT), a commonly used explosive for military and industrial applications, can cause serious environmental pollution. 28-day laboratory pot experiment was carried out applying bioaugmentation using laboratory selected bacterial strains as inoculum, biostimulation with molasses and cabbage leaf extract, and phytoremediation using rye and blue fenugreek to study the effect of these treatments on TNT removal and changes in soil microbial community responsible for contaminant degradation. Chemical analyses revealed significant decreases in TNT concentrations, including reduction of some of the TNT to its amino derivates during the 28-day tests. The combination of bioaugmentation…

Evidence for shifts in the structure and abundance of the microbial community in a long-term PCB-contaminated soil under bioremediation.

2011

International audience; Although the impact of bioremediation of PCB-contaminated sites on the indigenous microbial community is a key question for soil restoration, it remains poorly understood. Therefore, a small-scale bioremediation assay made of (a) a biostimulation treatment with carvone, soya lecithin and xylose and (b) two bioaugmentation treatments, one with a TSZ7 mixed culture and another with a Rhodococcus sp. Z6 pure strain was set up. Changes in the structure of the global soil microbial community and in the abundances of different taxonomic phyla were monitored using ribosomal intergenic spacer analysis (RISA) and real-time PCR. After an 18-month treatment, the structure of th…

Relationships between soil water repellency and microbial community composition under different plant species in a Mediterranean semiarid forest

2014

Abstract Soil water repellency (SWR) can influence many hydrological soil properties, including water infiltration, uneven moisture distribution or water retention. In the current study we investigated how variable SWR persistence in the field is related to the soil microbial community under different plant species (P. halepensis, Q. rotundifolia, C. albidus and R. officinalis) in a Mediterranean forest. The soil microbial community was determined through phospholipid fatty acids (PLFA). The relationships between microbiological community structure and the soil properties pH, Glomalin Related Soil Protein (GRSP) and soil organic matter (SOM) content were also studied. Different statistical …

Soil carbon quality and nitrogen fertilization structure bacterial communities with predictable responses of major bacterial phyla

2014

Abstract Agricultural practices affect the soil ecosystem in multiple ways and the soil microbial communities represent an integrated and dynamic measure of soil status. Our aim was to test whether the soil bacterial community and the relative abundance of major bacterial phyla responded predictably to long-term organic amendments representing different carbon qualities (peat and straw) in combination with nitrogen fertilization levels and if certain bacterial groups were indicative of specific treatments. We hypothesized that the long-term treatments had created distinctly different ecological niches for soil bacteria, suitable for either fast-growing copiotrophic bacteria, or slow-growing…