Search results for "Modeling"
showing 10 items of 4489 documents
Effects of environmental and temporal factors on Glomeromycotina spores in sand dunes along the Gulf of Valencia (Spain)
2019
Abstract AMF symbiosis in sand dunes is the key for maintenance of stable vegetation. The main goal of this work was to determine the effects of environmental and temporal factors on AMF living in sand dunes (Gulf of Valencia, Spain). Soil samples were collected seasonally at 6 sites, during 2 yrs, from three habitats and four plant species and the frequency and relative abundance of AMF was examined. AMF were more frequent in mobile than in embryonic dunes, in spring and in sites with old vegetation. Ten AMF species were identified, their distribution depending mainly on the anthropogenic disturbance of the site. Gigasporaceae Cetraspora sp. and Dentiscutata sp. preferred undisturbed soil …
Staying alive on an active volcano: 80 years population dynamics of Cytisus aeolicus (Fabaceae) from Stromboli (Aeolian Islands, Italy)
2020
Abstract Cytisus aeolicus is a narrow endemic species restricted to the Aeolian archipelago (SE Tyrrhenian Sea, Italy) and it is one of the most evolutionarily isolated plants in the Mediterranean flora. Historical and literature data suggest that both metapopulations and isolated individuals of C. aeolicus are gradually shrinking. Field investigations and drone images demonstrate that the C. aeolicus metapopulation from Stromboli experienced a strikingly fast increase during the last decades. As of 2019, more than 7000 ± 3000 mature individuals occur on Stromboli, i.e. 14 to 20 times more than those counted during the last census, 25 years ago. The diachronic analysis of aerial photos conc…
Historical and current diversity patterns of mediterranean marine species
2021
In this issue, the biodiversity in the Mediterranean Sea has been described at a synchronic and a diachronic level, highlighting the past two centuries for which museum collections can provide overlooked information. Historical records are preserved for the major marine taxa, knowledge of which would greatly benefit from employing specimens and data collected in the past. All of the articles review the current status of the marine diversity of species belonging to several taxonomic groups (seagrasses, macroalgae, sponges, polychaetes, bivalves, sharks, fishes, mammals) and explore the ecological and conservation implications of some of the most threatened ones.
Cetacean strandings and museum collections: A focus on Sicily island crossroads for mediterranean species
2021
The study examined the extent of the cetacean strandings in Italy, with a particular focus on Sicily Island. The paper aimed to contribute to the description of a pattern that contemplates the “regular and rare” cetacean species passage along the Sicilian coast. The estimate of marine cetacean strandings was extrapolated from the National Strandings Data Bank (BDS—Banca Dati Spiaggiamenti) and evaluated according to a subdivision in three coastal subregions: the Tyrrhenian sub-basin (northern Sicilian coast), the Ionian sub-basin (eastern Sicilian coast), and the Channel of Sicily (southern Sicilian coast). Along the Italian coast, more than 4880 stranding events have been counted in the pe…
Efficient estimation of generalized linear latent variable models.
2019
Generalized linear latent variable models (GLLVM) are popular tools for modeling multivariate, correlated responses. Such data are often encountered, for instance, in ecological studies, where presence-absences, counts, or biomass of interacting species are collected from a set of sites. Until very recently, the main challenge in fitting GLLVMs has been the lack of computationally efficient estimation methods. For likelihood based estimation, several closed form approximations for the marginal likelihood of GLLVMs have been proposed, but their efficient implementations have been lacking in the literature. To fill this gap, we show in this paper how to obtain computationally convenient estim…
Natural Selection Fails to Optimize Mutation Rates for Long-Term Adaptation on Rugged Fitness Landscapes
2008
The rate of mutation is central to evolution. Mutations are required for adaptation, yet most mutations with phenotypic effects are deleterious. As a consequence, the mutation rate that maximizes adaptation will be some intermediate value. Here, we used digital organisms to investigate the ability of natural selection to adjust and optimize mutation rates. We assessed the optimal mutation rate by empirically determining what mutation rate produced the highest rate of adaptation. Then, we allowed mutation rates to evolve, and we evaluated the proximity to the optimum. Although we chose conditions favorable for mutation rate optimization, the evolved rates were invariably far below the optimu…
Colour patch size and measurement error using reflectance spectrophotometry
2017
1 - Over the past twenty years, portable and relatively affordable spectrophotometers have greatly advanced the study of animal coloration. However, the small size of many colour patches poses methodological challenges that have not, to date, been assessed in the literature. Here, we tackle this issue for a reflectance spectrophotometry set-up widely used in ecology and evolution (the beam method). 2 - We reviewed the literature on animal coloration reporting the use of reflectance spectrophotometry to explore how the minimum measurable size of a colour patch is determined. We then used coloured plastic sheets to create artificial colour patches, and quantify the relationship between colour…
A large-scale, higher-level, molecular phylogenetic study of the insect order Lepidoptera (moths and butterflies).
2013
Background Higher-level relationships within the Lepidoptera, and particularly within the species-rich subclade Ditrysia, are generally not well understood, although recent studies have yielded progress. We present the most comprehensive molecular analysis of lepidopteran phylogeny to date, focusing on relationships among superfamilies. Methodology / Principal Findings 483 taxa spanning 115 of 124 families were sampled for 19 protein-coding nuclear genes, from which maximum likelihood tree estimates and bootstrap percentages were obtained using GARLI. Assessment of heuristic search effectiveness showed that better trees and higher bootstrap percentages probably remain to be discovered even …
Integrated membrane bioreactors modelling: A review on new comprehensive modelling framework
2021
International audience; Integrated Membrane Bioreactor (MBR) models, combination of biological and physical models, have been representing powerful tools for the accomplishment of high environmental sustainability. This paper, produced by the International Water Association (IWA) Task Group on Membrane Modelling and Control, reviews the state-of-the-art, identifying gaps for future researches, and proposes a new integrated MBR modelling framework. In particular, the framework aims to guide researchers and managers in pursuing good performances of MBRs in terms of effluent quality, operating costs (such as membrane fouling, energy consumption due to aeration) and mitigation of greenhouse gas…
Assembling and testing a generic phenological model to predict Lobesia botrana voltinism for impact studies.
2020
13 pages; International audience; The physiological development of insect pests is driven by temperature and photoperiod. Geographic variations in the speed of growth reflect current patterns in thermal conditions as a function of latitude and altitude. Global warming will likely lead to shifts in pests’ phenology. Insects are expected to overwinter earlier and develop more generations, with implications for the risks of damage to agricultural crops. Understanding and monitoring of the voltinism of insect pests will be increasingly important to anticipate critical phases of pest development and devise options for adapting pest control measures. In this study, we describe a new generic pheno…