Search results for "Molecules"

showing 10 items of 1147 documents

Monte carlo simulation of the glass transition of polymer melts

2007

The bond fluctuation model of polymer melts is presented as a reasonable compromise between simulation efficiency and realistic chemical detail. It is shown that inclusion of a potential energy that depends on the length of the effective bonds connecting the effective monomers easily creates a conflict between configurational entropy of dense packing and the energetic tendency of the bonds to stretch. This competition leads to a glass transition of the model, which very well describes many features of real systems.

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceMonte Carlo methodConfiguration entropyThermodynamicsPolymerPotential energyCondensed Matter::Soft Condensed Matterchemistry.chemical_compoundMonomerchemistryGlass transitionSupercoolingBond fluctuation model
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Unexpectedly normal phase behavior of single homopolymer chains

2006

Employing Monte Carlo simulations, we show that the topology of the phase diagram of a single flexible homopolymer chain changes in dependence on the range of an attractive square well interaction between the monomers. For a range of attraction larger than a critical value, the equilibrium phase diagram of the single polymer chain and the corresponding polymer solution phase diagram exhibit vapor (swollen coil, dilute solution), liquid (collapsed globule, dense solution), and solid phases. Otherwise, the liquid-vapor transition vanishes from the equilibrium phase diagram for both the single chain and the polymer solution. This change in topology of the phase diagram resembles the behavior k…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceMonte Carlo methodEnthalpyThermodynamicsPolymerConformational entropyCritical valueCondensed Matter::Soft Condensed MatterColloidchemistryEntropy (order and disorder)Phase diagramPhysical Review E
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A Monte Carlo study of diffusion in "living polymers"

1996

We report the first numeric experiments on diffusion in living polymers (polymers that can break and recombine reversibly, and are characterized by an exponential molecular weight distribution). In the simulation we use a modification of the bond fluctuation model which is known to reproduce the correct Rouse dynamics of polymer chains. The diffusion coefficient D reveals a Rouse-type behaviour D ∝ 1/L, where L is the average chain length of the polydisperse system. We also find a D ∝ exp [ − V/2kBT] dependence on the bond energy V, whereas at constant temperature the diffusion coefficient turns out to be inversely proportional, D ∝ ρ−1, to the monomer density of the system ρ in agreement w…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceMonte Carlo methodGeneral Physics and AstronomyThermodynamicsPolymerExponential functionCondensed Matter::Soft Condensed Matterchemistry.chemical_compoundMonomerchemistryMolar mass distributionStatistical physicsDiffusion (business)Bond energyConstant (mathematics)Europhysics Letters (EPL)
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Anomalous scaling of the critical temperature of unmixing with chain length for two-dimensional polymer blends

2003

The thermodynamics, structure and the chain configurations of symmetrical polymer mixtures confined into ultrathin films are studied by Monte Carlo simulations of the bond fluctuation model. It is shown that the Flory-Huggins–type scaling of the critical temperature (Tc ~ N) with chain length N in the bulk is replaced by a weaker increase, Tc ~ N1/2, in an ultrathin film, and this is interpreted in terms of geometric arguments. The pair-correlation function g(r) of monomers from different chains exhibits a pronounced correlation hole, and the density of intermolecular contacts zc decreases with N as zc ~ N−1/2.

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceMonte Carlo methodIntermolecular forceGeneral Physics and AstronomyThermodynamicsTwo-dimensional polymerPolymerCondensed Matter::Soft Condensed MatterChain (algebraic topology)chemistryPolymer blendConfined spaceScalingEurophysics Letters (EPL)
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Influence of chain stiffness on knottedness in single polymers.

2013

In the present article, we investigate and review the influence of chain stiffness on self-entanglements and knots in a single polymer chain with Monte Carlo simulations spanning good solvent, theta and globular phases. The last-named are of particular importance as a model system for DNA in viral capsids. Intriguingly, the dependence of knot occurrence and complexity with increasing stiffness is non-trivial, but can be understood with a few simple concepts outlined in the present article.

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceMonte Carlo methodMolecular ConformationStiffnessModel systemNanotechnologyPolymerDNABiochemistryMolecular conformationKnot (unit)BiopolymerschemistrymedicineSolventsNucleic Acid ConformationStatistical physicsmedicine.symptomBiochemical Society transactions
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Modeling Studies of the Phase Behavior of Monomer/Polymer/Disk Composites

2008

The model developed by Balazs et al. to explain the phase behavior of polymer/clay composites is extended to monomer/polymer/clay composites, obtaining an expression for the free energy of a monomer/polymer/thin-disk mixture. By minimizing the free energy and calculating the chemical potentials of the three system components, phase diagrams for the monomer/disk and monomer/polymer/disk mixtures are contructed. Through the evolution and comparison of these diagrams, the effects of nanodisk size, polymer molecular mass and interaction parameters (temperature) on mixture stability and attained morphology are then studied.

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceMorphology (linguistics)Polymers and PlasticsOrganic ChemistryPolymerCondensed Matter PhysicsCondensed Matter::Soft Condensed MatterInorganic Chemistrychemistry.chemical_compoundMonomerchemistryPhase (matter)Materials ChemistryComposite materialPhase diagramMacromolecular Theory and Simulations
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Static and dynamic scaling behavior of a polymer melt model with triple-well bending potential

2018

We perform molecular-dynamics simulations for polymer melts of the coarse-grained polyvinyl alcohol model that crystallizes upon slow cooling. To establish the properties of its high temperature liquid state as a reference point, we characterize in detail the structural features of equilibrated polymer melts with chain lengths $5\le N \le 1000$ at a temperature slightly above their crystallization temperature. We find that the conformations of sufficiently long polymers with $N >50$ obey essentially the Flory's ideality hypothesis. The chain length dependence of the end-to-end distance and the gyration radius follow the scaling predictions of ideal chains and the probability distributions o…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials sciencePolymers and PlasticsCrystallization of polymersThermodynamicsMesophase02 engineering and technologyPolymer021001 nanoscience & nanotechnologyCondensed Matter Physics01 natural sciencesGyrationCondensed Matter::Soft Condensed MatterMean squared displacementReptationMolecular dynamicschemistry0103 physical sciencesMaterials ChemistryPhysical and Theoretical Chemistry010306 general physics0210 nano-technologyScalingJournal of Polymer Science Part B: Polymer Physics
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Kinetic Monte Carlo Simulations of Flow-Assisted Polymerization

2012

We performed kinetic Monte Carlo simulations on a model of a polymerization process in the presence of a periodic oscillatory flow to explore the role of mixing in polymerization reactors. Application of an oscillatory flow field helps overcome the diffusive limitations that develop during a polymerization process due to an increase in the molecular weights of polymer chains, thereby giving rise to high rates of polymerization. A systematic increase in the flow strength results in a "dynamic" coil-stretch transition, leading to an elongation of polymer chains. Reactive ends of stretched (polymer) chains react more frequently than the reactive ends of coiled chains, which are screened by oth…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials sciencePolymers and PlasticsField (physics)Organic Chemistrytechnology industry and agricultureMixing (process engineering)NanotechnologyPolymerInorganic Chemistrychemistry.chemical_compoundMonomerchemistryPolymerizationFlow (mathematics)Chemical physicsMaterials ChemistryKinetic Monte CarloChoked flowACS Macro Letters
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Conformational Properties of End-Grafted Bottlebrush Polymers

2020

Scaling analysis combined with free-energy calculations and molecular dynamics simulations of a coarse-grained bead-spring model have been used to study the structural properties of planar brushes ...

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials sciencePolymers and PlasticsOrganic Chemistry02 engineering and technologyPolymer010402 general chemistry021001 nanoscience & nanotechnology01 natural sciences0104 chemical sciencesCondensed Matter::Soft Condensed MatterInorganic ChemistryMolecular dynamicsPlanarchemistryChemical physicsMaterials Chemistry0210 nano-technologyScalingMacromolecules
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Monte Carlo simulation studies of the interfaces between polymeric and other solids as models for fiber-matrix interactions in advanced composite mat…

1996

As a coarse-grained model for dense amorphous polymer systems interacting with solid walls (i.e., the fiber surface in a composite), the bond fluctuation model of flexible polymer chains confined between two repulsive surfaces is studied by extensive Monte Carlo simulations. Choosing a potential for the length of an effective bond that favors rather long bonds, the full temperature region from ordinary polymer melts down to the glass transition is accessible. It is shown that in the supercooled state near the glass transition an “interphase” forms near the walls, where the structure of the melt is influenced by the surface. This “interphase” already shows up in static properties, but also h…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials sciencePolymers and PlasticsOrganic ChemistryMonte Carlo methodMineralogyPolymerCondensed Matter PhysicsGyrationAmorphous solidCondensed Matter::Soft Condensed MatterInorganic ChemistrychemistryChemical physicsMaterials ChemistryRadius of gyrationSupercoolingGlass transitionConfined spaceMacromolecular Theory and Simulations
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