Search results for "Monte Carlo method"

showing 10 items of 1234 documents

Monte Carlo simulations of chain dynamics in polymer brushes

1994

The bond-fluctuation model of polymer chains has been used to study layers of end-grafted polymers anchoring at repulsive walls for a broad range of chain length, grafting densities and solvent quality. The dynamics of monomers and associated relaxation times are investigated and interpreted by phenomenological theories and scaling arguments. The case is also considered where a chain is cut off from its anchor point and the chain is subsequently expelled from the brush. Both the velocity with which the chain leaves the brush and the associated conformational changes (chain contraction etc.) are analysed and interpreted in terms of recent theoretical concepts.

chemistry.chemical_classificationQuantitative Biology::BiomoleculesChemistryRelaxation (NMR)Monte Carlo methodAnchoringPolymerCondensed Matter::Soft Condensed MatterMolecular dynamicsChain (algebraic topology)Chemical physicsStatistical physicsPhysical and Theoretical ChemistryScalingWorm-like chainFaraday Discussions
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Anomalous Structure and Scaling of Ring Polymer Brushes

2011

A comparative simulation study of polymer brushes formed by grafting at a planar surface either flexible linear polymers (chain length $N_L$) or (non-catenated) ring polymers (chain length $N_R=2 N_L$) is presented. Two distinct off-lattice models are studied, one by Monte Carlo methods, the other by Molecular Dynamics, using a fast implementation on graphics processing units (GPUs). It is shown that the monomer density profiles $\rho(z)$ in the $z$-direction perpendicular to the surface for rings and linear chains are practically identical, $\rho_R(2 N_L, z)=\rho_L(N_L, z)$. The same applies to the pressure, exerted on a piston at hight z, as well. While the gyration radii components of ri…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesCondensed Matter - Materials ScienceMaterials scienceStatistical Mechanics (cond-mat.stat-mech)Monte Carlo methodGeneral Physics and AstronomyMaterials Science (cond-mat.mtrl-sci)FOS: Physical sciencesPolymerCondensed Matter - Soft Condensed MatterRing (chemistry)GyrationMolecular physicsCondensed Matter::Soft Condensed MatterMolecular dynamicsPlanarchemistryPerpendicularSoft Condensed Matter (cond-mat.soft)ScalingCondensed Matter - Statistical Mechanics
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Selfdiffusion of polymer chains in solutions and melts

2005

Anomalous diffusion of monomers of polymer chains, as well as motion of these chains as a whole, is discussed with an emphasis on Monte Carlo simulations and simple scaling concepts. While the behavior of isolated chains in good solvents or Theta-solvents without excluded volume interactions is fully accounted for by the Rouse model, the behavior is less clear both for isolated chains in bad solvents and for chains in dense melts. Collapsed chains are shown to diffuse as g3(t) = <([rCM (t) -rCM(0)]2〉 ∝ tξ3 where the (effective?) exponent ξ3 simply seems to be linearly temperature-dependent for temperatures T lower than the Σ-temperature, ξ3 T/Θ. A relaxation time τ oc N3 is found, and scali…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceAnomalous diffusionMonte Carlo methodThermodynamicsPolymerPolymer brushCondensed Matter::Soft Condensed Matterchemistry.chemical_compoundMonomerchemistryExcluded volumeExponentPhysical chemistryScaling
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Anomalous Diffusion and Relaxation of Collapsed Polymer Chains

1994

Time-dependent displacement of monomers and the centre-of-gravity motion of a polymer chain at various temperatures below the theta-temperature are studied by Monte Carlo simulation of an off-lattice model. While inner monomers diffuse Rouse-like, [ri(t) − ri(0)]2  t1/2, the centre of mass exhibits pronounced anomalous diffusion, [rc.m.(t) − rc.m.(0)]2  ta, where the exponent a seems to depend on temperature. The resulting anomalous dependence of the relaxation times on chain length is discussed in terms of scaling ideas. A possible relation to a glasslike freezing in of the collapsed globules is pointed out.

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceCondensed matter physicsAnomalous diffusionMonte Carlo methodGeneral Physics and AstronomyPolymerCondensed Matter::Soft Condensed Matterchemistry.chemical_compoundMonomerchemistryExponentRelaxation (physics)Anomaly (physics)ScalingEurophysics Letters (EPL)
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Scaling concepts for polymer brushes and their test with computer simulation

2004

After a brief review of the scaling concepts for static and dynamic properties of polymer brushes in good solvents and Theta solvents, the Monte Carlo evidence is discussed. It is shown that under typical conditions the diameter of the last blob is of the order of 10-20% of the brush height, and therefore pronounced deviations from the self-consistent field predictions occur. In bad solvents, lateral microphase separation occurs leading to an irregular pattern of "dimples". Particularly interesting is the response of brushes to shear deformation, and the interaction between two interpenetrating brushes. Recent attempts to understand the resulting shear forces via molecular-dynamics simulati…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceField (physics)Shear forceMonte Carlo methodBiophysicsBrushSurfaces and InterfacesGeneral ChemistryPolymerlaw.inventionCondensed Matter::Soft Condensed MatterchemistrylawDimpleGeneral Materials ScienceStatistical physicsSoft matterScalingBiotechnologyThe European Physical Journal E
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Monte carlo simulation of the glass transition of polymer melts

2007

The bond fluctuation model of polymer melts is presented as a reasonable compromise between simulation efficiency and realistic chemical detail. It is shown that inclusion of a potential energy that depends on the length of the effective bonds connecting the effective monomers easily creates a conflict between configurational entropy of dense packing and the energetic tendency of the bonds to stretch. This competition leads to a glass transition of the model, which very well describes many features of real systems.

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceMonte Carlo methodConfiguration entropyThermodynamicsPolymerPotential energyCondensed Matter::Soft Condensed Matterchemistry.chemical_compoundMonomerchemistryGlass transitionSupercoolingBond fluctuation model
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Unexpectedly normal phase behavior of single homopolymer chains

2006

Employing Monte Carlo simulations, we show that the topology of the phase diagram of a single flexible homopolymer chain changes in dependence on the range of an attractive square well interaction between the monomers. For a range of attraction larger than a critical value, the equilibrium phase diagram of the single polymer chain and the corresponding polymer solution phase diagram exhibit vapor (swollen coil, dilute solution), liquid (collapsed globule, dense solution), and solid phases. Otherwise, the liquid-vapor transition vanishes from the equilibrium phase diagram for both the single chain and the polymer solution. This change in topology of the phase diagram resembles the behavior k…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceMonte Carlo methodEnthalpyThermodynamicsPolymerConformational entropyCritical valueCondensed Matter::Soft Condensed MatterColloidchemistryEntropy (order and disorder)Phase diagramPhysical Review E
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A Monte Carlo study of diffusion in "living polymers"

1996

We report the first numeric experiments on diffusion in living polymers (polymers that can break and recombine reversibly, and are characterized by an exponential molecular weight distribution). In the simulation we use a modification of the bond fluctuation model which is known to reproduce the correct Rouse dynamics of polymer chains. The diffusion coefficient D reveals a Rouse-type behaviour D ∝ 1/L, where L is the average chain length of the polydisperse system. We also find a D ∝ exp [ − V/2kBT] dependence on the bond energy V, whereas at constant temperature the diffusion coefficient turns out to be inversely proportional, D ∝ ρ−1, to the monomer density of the system ρ in agreement w…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceMonte Carlo methodGeneral Physics and AstronomyThermodynamicsPolymerExponential functionCondensed Matter::Soft Condensed Matterchemistry.chemical_compoundMonomerchemistryMolar mass distributionStatistical physicsDiffusion (business)Bond energyConstant (mathematics)Europhysics Letters (EPL)
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Anomalous scaling of the critical temperature of unmixing with chain length for two-dimensional polymer blends

2003

The thermodynamics, structure and the chain configurations of symmetrical polymer mixtures confined into ultrathin films are studied by Monte Carlo simulations of the bond fluctuation model. It is shown that the Flory-Huggins–type scaling of the critical temperature (Tc ~ N) with chain length N in the bulk is replaced by a weaker increase, Tc ~ N1/2, in an ultrathin film, and this is interpreted in terms of geometric arguments. The pair-correlation function g(r) of monomers from different chains exhibits a pronounced correlation hole, and the density of intermolecular contacts zc decreases with N as zc ~ N−1/2.

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceMonte Carlo methodIntermolecular forceGeneral Physics and AstronomyThermodynamicsTwo-dimensional polymerPolymerCondensed Matter::Soft Condensed MatterChain (algebraic topology)chemistryPolymer blendConfined spaceScalingEurophysics Letters (EPL)
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Influence of chain stiffness on knottedness in single polymers.

2013

In the present article, we investigate and review the influence of chain stiffness on self-entanglements and knots in a single polymer chain with Monte Carlo simulations spanning good solvent, theta and globular phases. The last-named are of particular importance as a model system for DNA in viral capsids. Intriguingly, the dependence of knot occurrence and complexity with increasing stiffness is non-trivial, but can be understood with a few simple concepts outlined in the present article.

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceMonte Carlo methodMolecular ConformationStiffnessModel systemNanotechnologyPolymerDNABiochemistryMolecular conformationKnot (unit)BiopolymerschemistrymedicineSolventsNucleic Acid ConformationStatistical physicsmedicine.symptomBiochemical Society transactions
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