Search results for "Nitro"

showing 10 items of 2762 documents

Woody Plant Declines. What’s Wrong with the Microbiome?

2020

National audience; Woody plant (WP) declines have multifactorial determinants as well as a biological and economic reality. The vascular system of WPs involved in the transport of carbon, nitrogen, and water from sources to sinks has a seasonal activity, which places it at a central position for mediating plant–environment interactions from nutrient cycling to community assembly and for regulating a variety of processes. To limit effects and to fight against declines, we propose: (i) to consider the WP and its associated microbiota as an holobiont and as a set of functions; (ii) to consider simultaneously, without looking at what comes first, the physiological or pathogenic disorders; and (…

0106 biological sciences0301 basic medicineNitrogenecological engineering[SDV]Life Sciences [q-bio]microbiomePlant ScienceBiology01 natural scienceswoody plant decline03 medical and health scienceshomeostasisMicrobiomeSoil MicrobiologyComputingMilieux_MISCELLANEOUSholobiont2. Zero hungerEcologyMicrobiotaPlants15. Life on landEconomic realityEcological engineeringCarbonHolobiont030104 developmental biology[SDE]Environmental Sciencesrhizosphere010606 plant biology & botanyWoody plantTrends in Plant Science
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Ammonium acts systemically while nitrate exerts an additional local effect on Medicago truncatula nodules

2020

National audience; Symbiotic nitrogen fixation (SNF) has a high energetic cost for legume plants; legumes thus reduce SNF when soil N is available. The present study aimed to increase our understanding regarding the impacts of the two principal forms of available N in soils (ammonium and nitrate) on SNF. We continuously measured the SNF of Medicago truncatula under controlled conditions. This permitted nodule sampling for comparative transcriptome profiling at points connected to the nodules' reaction following ammonium or nitrate applications. The N component of both ions systemically induced a rhythmic pattern of SNF, while the activity in control plants remained constant. This rhythmic a…

0106 biological sciences0301 basic medicinePlant Sciencenodule activity01 natural sciencesNicotianamine synthaseTranscriptome03 medical and health scienceschemistry.chemical_compoundNitratenitrateRNA seqAmmonium CompoundsMedicago truncatulaGeneticsAmmoniumLeghemoglobinSymbiosisLegumeNitratesbiologyNCR peptidesfungiGeneral MedicineneNASbiology.organism_classificationMedicago truncatula030104 developmental biologychemistryBiochemistrynitrogen fixation[SDE]Environmental SciencesNitrogen fixationbiology.proteinRoot Nodules PlantAgronomy and Crop Science010606 plant biology & botany
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Functional characterization of the chaperon-like protein Cdc48 in cryptogein-induced immune response in tobacco

2017

SPEIPMUBINRASUPDATDOCT; Cdc48, a molecular chaperone conserved in different kingdoms, is a member of the AAA+ family contributing to numerous processes in mammals including proteins quality control and degradation, vesicular trafficking, autophagy and immunity. The functions of Cdc48 plant orthologues are less understood. We previously reported that Cdc48 is regulated by S-nitrosylation in tobacco cells undergoing an immune response triggered by cryptogein, an elicitin produced by the oomycete Phytophthora cryptogea. Here, we inv estigated the function of NtCdc48 in cryptogein signalling and induced hypersensitive-like cell death. NtCdc48 was found to accumulate in elicited cells at both th…

0106 biological sciences0301 basic medicineProgrammed cell deathPhysiologyImmunoprecipitationNitrosation[SDV]Life Sciences [q-bio]PopulationPlant ScienceBiologyBioinformatics01 natural sciencesdefence responsescryptogeinFungal Proteins03 medical and health sciencesImmune systemGene Expression Regulation PlantValosin Containing ProteinPlant CellsTobaccoRNA MessengereducationPlant ProteinsRegulation of gene expressioneducation.field_of_studyFungal protein[ SDV ] Life Sciences [q-bio]AutophagyElicitinCell biology030104 developmental biologycell deathChromatography GelCdc48 partnersNtCdc48Protein Binding010606 plant biology & botany
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Transcriptome analysis of the Populus trichocarpa–Rhizophagus irregularis Mycorrhizal Symbiosis: Regulation of Plant and Fungal Transportomes under N…

2017

Nutrient transfer is a key feature of the arbuscular mycorrhizal (AM) symbiosis. Valuable mineral nutrients are transferred from the AM fungus to the plant, increasing its fitness and productivity, and, in exchange, the AM fungus receives carbohydrates as an energy source from the plant. Here, we analyzed the transcriptome of the Populus trichocarpa-Rhizophagus irregularis symbiosis using RNA-sequencing of non-mycorrhizal or mycorrhizal fine roots, with a focus on the effect of nitrogen (N) starvation. In R. irregularis, we identified 1,015 differentially expressed genes, whereby N starvation led to a general induction of gene expression. Genes of the functional classes of cell growth, memb…

0106 biological sciences0301 basic medicineRhizophagus irregularisMICROBE INTERACTIONSPhysiologyarbuscule[SDV]Life Sciences [q-bio]racine finePlant Science01 natural sciencesnitrogenTranscriptomeGene Expression Regulation PlantMycorrhizaeLOTUS-JAPONICUSGLOMUS-INTRARADICESPlant ProteinsGENE-EXPRESSION2. Zero hungerazotePHOSPHATE TRANSPORTERAMMONIUM TRANSPORTERSorgan transplantationGeneral Medicinefood shortageMedicago truncatulaArbuscular mycorrhizasymbiose mycorhiziennePopulusfamineEnergy sourceARBUSCULAR MYCORRHIZABiologySULFUR STARVATION03 medical and health sciencesPHOSPHORUS ACQUISITIONSymbiosistransport de nutrimentsBotanySymbiosisGene Expression Profilingblack cottonwoodCell Biologybiology.organism_classificationMEDICAGO-TRUNCATULATransplantationpopulus trichocarpa030104 developmental biologyMembrane biogenesis010606 plant biology & botanytransplantation
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Thioredoxin (Trxo1) interacts with proliferating cell nuclear antigen (PCNA) and its overexpression affects the growth of tobacco cell culture.

2017

Thioredoxins (Trxs), key components of cellular redox regulation, act by controlling the redox status of many target proteins, and have been shown to play an essential role in cell survival and growth. The presence of a Trx system in the nucleus has received little attention in plants, and the nuclear targets of plant Trxs have not been conclusively identified. Thus, very little is known about the function of Trxs in this cellular compartment. Previously, we studied the intracellular localization of PsTrxo1 and confirmed its presence in mitochondria and, interestingly, in the nucleus under standard growth conditions. In investigating the nuclear function of PsTrxo1 we identified proliferati…

0106 biological sciences0301 basic medicineTFs transcription factorsOverexpressionBiologíaBiFC bimolecular fluorescence complementationClinical BiochemistryCell Culture TechniquesTobacco BY-2 cells01 natural sciencesBiochemistryTBY-2 tobacco bright yellow-2DTT 14-dithiothreitolBimolecular fluorescence complementationThioredoxinsGene Expression Regulation PlantTrx thioredoxinlcsh:QH301-705.5GFP green fluorescent proteinlcsh:R5-920biologyProliferating cell nuclear antigen (PCNA)Cell cycleGlutathione3. Good healthCell biologyMitochondriaNTR NADPH thioredoxin reductaseProtein TransportDEM diethyl maleateRT-qPCR Reverse transcription quantitative polymerase chain reactionThioredoxinlcsh:Medicine (General)Oxidation-ReductionAMS 4-acetamido-4-maleimidylstilbene-22-disulfonic acidResearch PaperPCNA proliferating cell nuclear antigenOex overexpressingCell cycleNucleusThioredoxin o103 medical and health sciencesROS reactive oxygen speciesDownregulation and upregulationProliferating Cell Nuclear AntigenTobaccoDAPI 46-diamidine-2-phenylindolmCBM monochlorobimaneCellular compartmentCell NucleusCell growthOrganic ChemistryBotánicaPeasMolecular biologyYFP yellow fluorescent proteinProliferating cell nuclear antigenTBS Tris-buffered salineOD optical density030104 developmental biologylcsh:Biology (General)Cell cultureRNA reactive nitrogen speciesbiology.proteinPrx peroxiredoxinBSA bovine serum albumin010606 plant biology & botanyRedox biology
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NO Signalling in Plant Immunity

2016

The importance of nitric oxide (NO) in innate and adaptive immunity in mammals is well recognised. NO exerts antimicrobial properties against invaders but also displays immunoregulatory functions in which S-nitrosylation represents a signalling process of major importance. Over the last two decades, a growing body of evidence suggests that NO is also a major component of plant immunity. Our understanding of its role in plant defence has been enriched by the identification and functional analysis of S-nitrosylated proteins. The recent identification of new S-nitrosylated proteins including the chaperone-like enzyme cell division cycle 48 (CDC48), histone deacetylases (HDACs) and calmodulin (…

0106 biological sciences0301 basic medicinebiologyCalmodulinPlant ImmunityS-NitrosylationAcquired immune system01 natural sciencesCell biology03 medical and health sciences030104 developmental biologyHistoneSignallingbiology.proteinEpigenetics010606 plant biology & botanyCalcium signaling
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Characterization of the Heme Pocket Structure and ligand binding kinetics of non-symbiotic hemoglobins from the model legume Lotus japonicus

2017

14 Pags.- 6 Figs. This article is part of the Research Topic: Advances in legume research ( http://journal.frontiersin.org/researchtopic/4288/advances-in-legume-research ). Copyright of the Authors through a Creative Commons Attribution License. This Document is Protected by copyright and was first published by Frontiers. All rights reserved. it is reproduced with permission.

0106 biological sciences0301 basic medicineligand bindingLotus japonicusMutantPlant Science01 natural sciencesheme cavity03 medical and health scienceschemistry.chemical_compoundnon-symbiotic hemoglobinsBiologyHemebiologyChemistryNitrosylationHexacoordinateNitric oxide dioxygenaseLigand (biochemistry)biology.organism_classificationAffinitiesChemistry030104 developmental biologyBiochemistryLotus japonicusnitric oxide dioxygenase010606 plant biology & botany
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Methanotrophs are core members of the diazotroph community in decaying Norway spruce logs

2018

Dead wood is initially a nitrogen (N) poor substrate, where the N content increases with decay, partly due to biological N2 fixation, but the drivers of the N accumulation are poorly known. We quantified the rate of N2 fixation in decaying Norway spruce logs of different decay stages and studied the potential regulators of the N2-fixation activity. The average rate for acetylene reduction in the decaying wood was 7.5 nmol ethylene g−1d−1, which corresponds to 52.9 μg N kg−1d−1. The number of nifH copies (g−1 dry matter) was higher at the later decay stages, but no correlation between the copy number and the in vitro N2 fixation rate was found. All recovered nifH sequences were assigned to t…

0106 biological sciences0301 basic medicineta1172Soil Sciencechemistry.chemical_element010603 evolutionary biology01 natural sciencesMicrobiologyMethane03 medical and health scienceschemistry.chemical_compoundlahoaminenBotanyDry matterlahopuutritsobitdead woodnifHbiologyPicea abiesChemistryta1183coarse woody debrisPicea abiesbiology.organism_classificationNitrogenSubstrate (marine biology)kuusi030104 developmental biologytypensidontaasymbiotic nitrogen fixationNitrogen fixationDiazotrophCoarse woody debrisSoil Biology and Biochemistry
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The Glycerate and Phosphorylated Pathways of Serine Synthesis in Plants : The Branches of Plant Glycolysis Linking Carbon and Nitrogen Metabolism

2018

Serine metabolism in plants has been studied mostly in relation to photorespiration where serine is formed from two molecules of glycine. However, two other pathways of serine formation operate in plants and represent the branches of glycolysis diverging at the level of 3-phosphoglyceric acid. One branch (the glycerate – serine pathway) is initiated in the cytosol and involves glycerate formation from 3-phosphoglycerate, while the other (the phosphorylated serine pathway) operates in plastids and forms phosphohydroxypyruvate as an intermediate. Serine formed in these pathways becomes a precursor of glycine, formate and glycolate accumulating in stress conditions. The pathways can be linked …

0106 biological sciences0301 basic medicineycolysisReviewPlant Sciencelcsh:Plant culture01 natural sciencesSerine03 medical and health scienceslcsh:SB1-1110GlycolysisPlastidplastidNitrogen cycleglycerate serine pathwayγ-aminobutyric acid (GABA)gamma-aminobutyric acid (GABA)ChemistryBotanyCorrectionMetabolismBotanikglycolysisphosphorylated serine pathway030104 developmental biologyBiochemistryGlycinePhotorespirationPhosphorylation010606 plant biology & botany
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Net ammonification as influenced by plant diversity in experimental grasslands

2012

Abstract Previous plant diversity experiments have mainly reported positive correlations between diversity and N mineralization. We tested whether this relationship can be explained by plant diversity-induced changes i) in the quantity or quality of organic matter or ii) in microclimatic conditions of central European grassland mixtures. We measured ex-situ net ammonification in a laboratory incubation of aboveground plant material and soil sampled in differently diverse plant mixtures. Secondly, in-situ net ammonification was assessed in a field incubation with mineralization cores containing standardized material in four treatments: soil only (control), and soil mixed with field-fresh pla…

0106 biological sciences2. Zero hungerchemistry.chemical_classificationSoil Sciencefood and beverages04 agricultural and veterinary sciencesMineralization (soil science)15. Life on landBiology010603 evolutionary biology01 natural sciencesMicrobiologycomplex mixtureschemistryAgronomySoil water040103 agronomy & agriculture0401 agriculture forestry and fisheriesOrganic matterSpecies richnessLeaching (agriculture)IncubationNitrogen cycleLegumeSoil Biology & Biochemistry
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