Search results for "Nonstructural proteins"

showing 10 items of 100 documents

Unraveling the role of the secretor antigen in human rotavirus attachment to histo-blood group antigens

2019

25 Páginas, 7 figuras, 2 tablas

RNA virusesRotavirusViral DiseasesPhysiologyViral Nonstructural ProteinsPathology and Laboratory MedicineCrystallography X-Raymedicine.disease_causeBiochemistryBinding AnalysisReovirusesImmune PhysiologyRotavirusMedicine and Health SciencesChemical PrecipitationBiology (General)Antigens ViralGastroenterologiachemistry.chemical_classification0303 health sciencesImmune System ProteinsCrystallographyMolecular StructurebiologyPhysics030302 biochemistry & molecular biologyChemical ReactionsRNA-Binding ProteinsCondensed Matter PhysicsLigand (biochemistry)Amino acidChemistryInfectious DiseasesMedical MicrobiologyViral PathogensVirusesPhysical SciencesCrystal StructurePathogensCrystallizationResearch ArticleChemical ElementsGlycanQH301-705.5Virus RNAViral proteinImmunologyResearch and Analysis MethodsMicrobiologyABO Blood-Group SystemCell Line03 medical and health sciencesAntigenVirologyGeneticsmedicineSolid State PhysicsHumansAntigensBinding siteMicrobial PathogensMolecular BiologyRotavirus InfectionChemical Characterization030304 developmental biologyChemical PhysicsBinding SitesBiology and life sciencesMutagenesisOrganismsProteinsRC581-607Molecular biologyCarbonchemistrybiology.proteinCapsid ProteinsParasitologyImmunologic diseases. AllergyPLOS Pathogens
researchProduct

Assignment of the group A rotavirus NSP4 gene into genotypes using a hemi-nested multiplex PCR assay: a rapid and reproducible assay for strain surve…

2009

The rotavirus non-structural protein NSP4 has been implicated in a number of biological functions during the rotavirus cellular cycle and pathogenesis, and has been addressed as a target for vaccine development. The NSP4 gene has been classified into six genotypes (A–F). A semi-nested triplex PCR was developed for genotyping the major human NSP4 genotypes (A–C), which are common in human rotavirus strains but are also shared among most mammalian rotavirus strains. A total of 192 previously characterized human strains representing numerous G and P type specificities (such as G1P[8], G1P[4], G2P[4], G3P[3], G3P[8], G3P[9], G4P[6], G4P[8], G6P[4], G6P[9], G6P[14], G8P[10], G8P[14], G9P[8], G9P…

Rotavirus NSP4Microbiology (medical)RotavirusSettore MED/07 - Microbiologia E Microbiologia ClinicaDNA ComplementaryGenotypeSwinevirusesReassortmentMolecular Sequence DataReoviridaeBiologyViral Nonstructural Proteinsmedicine.disease_causeMicrobiologylaw.inventionFecesDogsSpecies SpecificitylawRotavirusGenotypeMultiplex polymerase chain reactionmedicineAnimalsHumansGenotypingPolymerase chain reactionPhylogenyDNA PrimersGlycoproteinsToxins BiologicalElectrophoresis Agar GelBase SequenceReverse Transcriptase Polymerase Chain ReactionReproducibility of ResultsGeneral MedicineHaplorhinibiology.organism_classificationVirologyMolecular biologyCatsRNA ViralCattleNested polymerase chain reactionJournal of medical microbiology
researchProduct

Detection of a porcine-like rotavirus in a child with enteritis in Italy.

2008

ABSTRACT During a 1-year rotavirus surveillance of children hospitalized with acute gastroenteritis in Brescia Hospital, Italy, a chimerical rotavirus strain, G3P[6], was detected, displaying the VP7 and VP4 genes of porcine origin and the NSP4 and VP6 genes of human origin. The reassortant nature of the virus rules out a direct zoonotic event.

RotavirusMicrobiology (medical)virusesMolecular Sequence DataReoviridaeRotavirus InfectionsViral Nonstructural Proteinsmedicine.disease_causeRotavirus InfectionsVirusMicrobiologyEnteritisfluids and secretionsVirologyRotavirusmedicineHumansAmino Acid SequencePhylogenyRecombination GeneticViral Structural ProteinsSequence Homology Amino AcidbiologyPorcine rotavirusInfantvirus diseasesSequence Analysis DNAAcute gastroenteritismedicine.diseasebiology.organism_classificationVirologyEnteritisItalyChild PreschoolRNA ViralSequence Alignment
researchProduct

Single-chain variable fragment (scFv) antibodies against rotavirus NSP4 enterotoxin generated by phage display.

2004

The rotavirus non-structural NSP4 protein causes membrane destabilization as well as an increase in intracellular calcium levels in eukaryotic cells and induces diarrhea in young mice, acting as a viral enterotoxin. In this study the phage display technique was used to generate a panel of single-chain variable fragment (scFv) antibodies specific for the NSP4 protein of the human rotavirus strain Wa from a human semi-synthetic scFv library. After several rounds of panning and selection on NSP4 adsorbed to polystyrene tubes, individual scFv were isolated and characterised by fingerprinting and by sequencing the VH and VL genes. The isolated scFv antibodies specifically recognize NSP4 in enzym…

RotavirusPhage displayvirusesBlotting WesternImmunoglobulin Variable Regionchemical and pharmacologic phenomenaEnzyme-Linked Immunosorbent AssayEnterotoxinBiologyViral Nonstructural Proteinsmedicine.disease_causeAntibodies ViralEnterotoxinsWestern blotSpecies SpecificityPeptide LibraryVirologyRotavirusmedicineSingle-chain variable fragmentPanning (camera)medicine.diagnostic_testrespiratory systembiochemical phenomena metabolism and nutritionVirologyMolecular biologyImmunoassaybiology.proteinAntibodyJournal of virological methods
researchProduct

Heterogeneity and temporal dynamics of evolution of G1 human rotaviruses in a settled population.

2006

ABSTRACT A rotavirus sample collection from 19 consecutive years was used to investigate the heterogeneity and the dynamics of evolution of G1 rotavirus strains in a geographically defined population. Phylogenetic analysis of the VP7 gene sequences of G1P[8] human rotavirus strains showed the circulation of a heterogeneous population comprising three lineages and seven sublineages. Increases in the circulation of G1 rotaviruses were apparently associated with the introduction of novel G1 strains that exhibited multiple amino acid changes in antigenic regions involved in rotavirus neutralization compared to the strains circulating in the previous years. The emergence and/or introduction of G…

RotavirusSerotypeSettore MED/07 - Microbiologia E Microbiologia ClinicaGenes ViralSettore MED/17 - Malattie InfettiveSequence analysisvirusesLineage (evolution)Molecular Sequence DataImmunologyPopulationViral Nonstructural ProteinsBiologymedicine.disease_causeMicrobiologyRotavirus InfectionsEvolution Molecularfluids and secretionsPhylogeneticsVirologyRotavirusmedicineHumansAmino Acid SequenceLongitudinal StudiesSerotypingeducationAntigens ViralPhylogenyGeneticseducation.field_of_studySequence Homology Amino AcidPhylogenetic treeInfantRNA-Binding Proteinsvirus diseasesVirologyItalyGenetic Diversity and Evolutionrotavirus G1Child PreschoolInsect ScienceCapsid ProteinsSample collection
researchProduct

Genetic characterization of G3 rotaviruses detected in Italian children in the years 1993–2005

2009

International audience; In recent years an apparent increase in the frequency of detection of G3P[8] rotaviruses has been observed worldwide. Similarly, in Italy G3P[8] strains have been detected sporadically and in a scattered fashion over 20 years, whereas in 2003 and 2005 G3P[8] rotavirus activity increased markedly. By analysis of the VP7, VP4, VP6 and NSP4 genes of a selection of G3P[8] rotaviruses detected between 1993 and 2005, a remarkable sequence conservation was observed in the VP7, VP4 and VP6 genes. By converse, after 2002 the Italian G3P[8] strains were found to possess unique mutations in significant regions of the NSP4 protein.

RotavirusSettore MED/07 - Microbiologia E Microbiologia ClinicaSettore MED/17 - Malattie InfettiveSequence analysisNSP4virusesMolecular Sequence DataReoviridaeViral Nonstructural ProteinsBiologymedicine.disease_causeRotavirus InfectionsVirusFeces03 medical and health sciencesfluids and secretionsViral geneticsPhylogeneticsVirologyRotavirusGenotypemedicineHumansAmino Acid SequenceAntigens ViralGenePhylogenyGlycoproteinsToxins Biological030304 developmental biology0303 health sciencesSequence Analysis RNA030306 microbiologyInfant NewbornInfantvirus diseasesbiology.organism_classificationVirologyInfectious DiseasesItalyChild PreschoolRNA ViralMedicineCapsid Proteinssequence analysirotavirus G3P[8]gastroenteriti
researchProduct

Rotavirus stimulates release of serotonin (5-HT) from human enterochromaffin cells and activates brain structures involved in nausea and vomiting

2011

Rotavirus (RV) is the major cause of severe gastroenteritis in young children. A virus-encoded enterotoxin, NSP4 is proposed to play a major role in causing RV diarrhoea but how RV can induce emesis, a hallmark of the illness, remains unresolved. In this study we have addressed the hypothesis that RV-induced secretion of serotonin (5-hydroxytryptamine, 5-HT) by enterochromaffin (EC) cells plays a key role in the emetic reflex during RV infection resulting in activation of vagal afferent nerves connected to nucleus of the solitary tract (NTS) and area postrema in the brain stem, structures associated with nausea and vomiting. Our experiments revealed that RV can infect and replicate in human…

RotavirusViral DiseasesViral Nonstructural ProteinsMiceChildlcsh:QH301-705.5Mice Inbred BALB CArea postremaBrainNauseaVagus NerveJejunumInfectious DiseasesMEDICINChild PreschoolEnterochromaffin cellVomitingMedicineSerotonin Antagonistsmedicine.symptomProto-Oncogene Proteins c-fosResearch Articlelcsh:Immunologic diseases. Allergymedicine.medical_specialtySerotoninVomitingImmunologyBiologyMicrobiologyRotavirus InfectionsSDG 3 - Good Health and Well-beingInternal medicineCell Line TumorVirologyGeneticsmedicineEnterochromaffin CellsAnimalsHumansBiologyMolecular BiologyGlycoproteinsToxins BiologicalMEDICINEVagus nerveEndocrinologyGene Expression Regulationlcsh:Biology (General)Cell cultureParasitologyEnteric nervous systemCalciumSerotoninlcsh:RC581-607Ex vivo
researchProduct

Role of nitric oxide during rotavirus infection.

2006

The pathophysiological mechanisms behind rotavirus-induced diarrhoea still remain incomplete. Current views suggest that the non-structural protein 4 (NSP4) of rotavirus and the enteric nervous system (ENS) participate in water secretion and diarrhoea. In the present work the role of nitric oxide (NO) in rotavirus infection and disease has been studied in vitro, mice and humans. Incubation of human intestinal epithelial cells (HT-29) with purified NSP4 but not with infectious virus produced NO2/NO3 accumulation in the incubation media. The NSP4-induced release of NO metabolites occurred within the first minutes after the addition of the toxin. Mice infected with murine rotavirus (strain EDI…

RotavirusvirusesReoviridaeNitric Oxide Synthase Type IIIleumIn Vitro TechniquesViral Nonstructural Proteinsmedicine.disease_causeNitric OxideVirusRotavirus InfectionsMicrobiologyNitric oxideCell LineJejunumchemistry.chemical_compoundMiceVirologyRotavirusmedicineAnimalsHumansProspective StudiesRNA MessengerGlycoproteinsToxins BiologicalMice Inbred BALB CbiologyBase SequenceToxinInfantbiology.organism_classificationVirologyGastroenteritisDiarrheaInfectious Diseasesmedicine.anatomical_structurechemistryAnimals NewbornCase-Control StudiesImmunologymedicine.symptomJournal of medical virology
researchProduct

Targeting SARS-CoV-2 Main Protease for Treatment of COVID-19: Covalent Inhibitors Structure-Activity Relationship Insights and Evolution Perspectives

2022

The viral main protease is one of the most attractive targets among all key enzymes involved in the SARS-CoV-2 life cycle. Covalent inhibition of the cysteine145 of SARS-CoV-2 MPRO with selective antiviral drugs will arrest the replication process of the virus without affecting human catalytic pathways. In this Perspective, we analyzed the in silico, in vitro, and in vivo data of the most representative examples of covalent SARS-CoV-2 MPRO inhibitors reported in the literature to date. In particular, the studied molecules were classified into eight different categories according to their reactive electrophilic warheads, highlighting the differences between their reversible/irreversible mech…

SARS-CoV-2COVID-19Viral Nonstructural ProteinsAntiviral AgentsSettore CHIM/08 - Chimica FarmaceuticaCOVID-19 Drug TreatmentCovalent inhibitorsMolecular Docking SimulationCysteine EndopeptidasesStructure-Activity RelationshipMain ProteaseDrug DiscoveryMolecular MedicineHumansProtease InhibitorsCysteineCoronavirus 3C Proteases
researchProduct

Oral immunization with HCV-NS3-transformed Salmonella: induction of HCV-specific CTL in a transgenic mouse model.

2001

Abstract Background & Aims: The ability to induce cytotoxic T cells is considered an important feature of a candidate hepatitis C virus (HCV) vaccine. We used an oral immunization strategy with attenuated HCV-NS3–transformed Salmonella typhimurium to deliver DNA directly to the gut-associated lymphoid tissue. Methods: HLA-A2.1 transgenic mice were immunized once with transformed attenuated Salmonella . HCV-specific CD8 + T cells were analyzed in vitro as well as in vivo by challenge of mice with recombinant HCV-NS3 vaccinia virus. Results: Salmonella (10 8 colony-forming units; 20 μg plasmid DNA) induced cytotoxic and IFN-γ–producing CD8 + T cells specific for the immunodominant epitope NS3…

Salmonella typhimuriumViral Hepatitis VaccinesSalmonellavirusesAdministration OralMice TransgenicHepacivirusViral Nonstructural Proteinsmedicine.disease_causeMajor histocompatibility complexEpitopeVirusMicrobiologychemistry.chemical_compoundInterferon-gammaMiceInterferonHLA-A2 AntigenmedicineVaccines DNACytotoxic T cellAnimalsVaccines SyntheticHepatologybiologyGastroenterologyvirus diseasesbiochemical phenomena metabolism and nutritionVirologydigestive system diseaseschemistrybiology.proteinImmunizationVacciniaCD8medicine.drugT-Lymphocytes CytotoxicGastroenterology
researchProduct