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showing 10 items of 12132 documents

Open data and digital morphology

2017

International audience; Over the past two decades, the development of methods for visualizing and analysing specimens digitally, in three and even four dimensions, has transformed the study of living and fossil organisms. However, the initial promise that the widespread application of such methods would facilitate access to the underlying digital data has not been fully achieved. The underlying datasets for many published studies are not readily or freely available, introducing a barrier to verification and reproducibility, and the reuse of data. There is no current agreement or policy on the amount and type of data that should be made available alongside studies that use, and in some cases…

0106 biological sciences0301 basic medicineLife Sciences & Biomedicine - Other TopicsDYNAMICSComputer scienceDatasets as TopicReuse01 natural sciencesFOSSILSthree-dimensional modelsNaturvetenskapData CurationGeneral Environmental ScienceEcologypalaeontology[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]70General Medicine11 Medical And Health SciencesCCbiomechanics Keywords: digital dataOpen dataPerspectiveComputer data storage[SDU.STU.PG]Sciences of the Universe [physics]/Earth Sciences/PaleontologyGeneral Agricultural and Biological SciencesNatural SciencesLife Sciences & BiomedicineDatasets as Topic1001TISSUESphenotypeBest practiceDigital dataLibrary science25Environmental Sciences & Ecology010603 evolutionary biologyBiological Science DisciplinesGeneral Biochemistry Genetics and Molecular BiologyQA76functional analysisSet (abstract data type)03 medical and health sciencesPALEONTOLOGYBiologySubject Category: Morphology and biomechanics Subject Areas: evolutionvisualizationdigital dataEvolutionary BiologyScience & TechnologyTOMOGRAPHIC MICROSCOPYMorphology and BiomechanicsGeneral Immunology and Microbiologybusiness.industryResearchQHReproducibility of Resultscomputed tomographyPERFORMANCE06 Biological Sciences144Data scienceEVOLUTIONVisualization030104 developmental biologyVISUALIZATION07 Agricultural And Veterinary SciencesbusinessProceedings of the Royal Society B: Biological Sciences
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Phenological and intrinsic predictors of mite and haemacoccidian infection dynamics in a Mediterranean community of lizards

2021

Ectotherms are vulnerable to environmental changes and their parasites are biological health indicators. Thus, parasite load in ectotherms is expected to show a marked phenology. This study investigates temporal host–parasite dynamics in a lizard community in Eastern Spain during an entire annual activity period. The hosts investigated were Acanthodactylus erythrurus, Psammodromus algirus and Psammodromus edwardsianus, three lizard species coexisting in a mixed habitat of forests and dunes, providing a range of body sizes, ecological requirements and life history traits. Habitat and climate were considered as potential environmental predictors of parasite abundance, while size, body conditi…

0106 biological sciences0301 basic medicineMaleMite InfestationsRange (biology)ForestsParasitemia010603 evolutionary biology01 natural sciencesParasite loadParasite LoadLife history theory03 medical and health scienceshost–parasite dynamicsAbundance (ecology)Sandbiology.animalLacertidaeAnimalsEcological interactionsEcosystemAcanthodactylus erythrurusbiologyLizardEcologyCoccidiosisLizardsbiology.organism_classificationCoccidia030104 developmental biologyInfectious DiseasesSpainEctothermLinear ModelsAnimal Science and ZoologyParasitologyFemaleLacertidaeparasite phenologyResearch ArticleIberian PeninsulaParasitology
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Response to formal comment on Myhrvold (2016) submitted by Griebeler and Werner (2017)

2018

In his 2016 paper, Myhrvold criticized ours from 2014 on maximum growth rates (Gmax, maximum gain in body mass observed within a time unit throughout an individual’s ontogeny) and thermoregulation strategies (ectothermy, endothermy) of 17 dinosaurs. In our paper, we showed that Gmax values of similar-sized extant ectothermic and endothermic vertebrates overlap. This strongly questions a correct assignment of a thermoregulation strategy to a dinosaur only based on its Gmax and (adult) body mass (M). Contrary, Gmax separated similar-sized extant reptiles and birds (Sauropsida) and Gmax values of our studied dinosaurs were similar to those seen in extant similar-sized (if necessary scaled-up) …

0106 biological sciences0301 basic medicineMetabolic AnalysisPhysiologylcsh:MedicineAnimal Phylogenetics01 natural sciencesDinosaursBody TemperatureExtant taxonOrnithologyMaximum gainMedicine and Health SciencesGrowth rateSauropsidalcsh:ScienceArchosauriaData ManagementMammalsMultidisciplinarybiologyVertebrateEukaryotaPrehistoric AnimalsThermoregulationPhylogeneticsBioassays and Physiological AnalysisPhysiological ParametersEctothermVertebratesRegression AnalysisComputer and Information SciencesVertebrate PaleontologyZoologyResearch and Analysis Methods010603 evolutionary biologyFormal CommentBirds03 medical and health sciencesbiology.animalBasal Metabolic Rate MeasurementAnimalsAnimal PhysiologyEvolutionary SystematicsPaleozoologyTaxonomyEvolutionary Biologylcsh:ROrganismsBiology and Life SciencesPaleontologyReptilesbiology.organism_classificationBird Physiology030104 developmental biologyAmniotesEarth Scienceslcsh:QAllometryPaleobiologyZoologyPLoS ONE
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Dinosaur Metabolism and the Allometry of Maximum Growth Rate

2016

In his 2016 paper, Myhrvold criticized ours from 2014 on maximum growth rates (Gmax, maximum gain in body mass observed within a time unit throughout an individual’s ontogeny) and thermoregulation strategies (ectothermy, endothermy) of 17 dinosaurs. In our paper, we showed that Gmax values of similar-sized extant ectothermic and endothermic vertebrates overlap. This strongly questions a correct assignment of a thermoregulation strategy to a dinosaur only based on its Gmax and (adult) body mass (M). Contrary, Gmax separated similar-sized extant reptiles and birds (Sauropsida) and Gmax values of our studied dinosaurs were similar to those seen in extant similar-sized (if necessary scaled-up) …

0106 biological sciences0301 basic medicineMetabolic stateMetabolic AnalysisPhysiologylcsh:MedicineAnimal Phylogenetics01 natural sciencesBody TemperatureDinosaursMathematical and Statistical TechniquesExtant taxonMedicine and Health SciencesBody SizeGrowth ratelcsh:Sciencemedia_commonArchosauriaData ManagementMammalsMultidisciplinaryEcologyFossilsEukaryotaRegression analysisPrehistoric AnimalshumanitiesCurve FittingPhylogeneticsBioassays and Physiological AnalysisPhysiological ParametersEctothermPhysical SciencesVertebratesRegression AnalysisStatistics (Mathematics)Research ArticleComputer and Information Sciencesmedia_common.quotation_subjectVertebrate PaleontologyBiologyResearch and Analysis Methods010603 evolutionary biologyMarsupialsFormal CommentBirds03 medical and health sciencesBasal Metabolic Rate MeasurementAnimalsEvolutionary SystematicsStatistical MethodsPaleozoologyTaxonomyEvolutionary BiologyVariableslcsh:ROrganismsReptilesBiology and Life SciencesPaleontology030104 developmental biologyEvolutionary biologyBasal metabolic rateAmniotesEarth Scienceslcsh:QAllometryPaleobiologyEnergy MetabolismZoologyMathematical FunctionsMathematicsPLoS ONE
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How ants acclimate: Impact of climatic conditions on the cuticular hydrocarbon profile

2017

1.Organisms from temperate zones are exposed to seasonal changes and must be able to cope with a wide range of climatic conditions. Especially ectotherms, including insects, are at risk to desiccate under dry and warm conditions, the more so given the changing climate. 2.To adjust to current conditions, organisms acclimate through changes in physiology, morphology and/or behaviour. Insects protect themselves against desiccation through a layer of cuticular hydrocarbons (CHC) on their body surface. Hence, acclimation may also affect the CHC profile, changing their waterproofing capacity under different climatic conditions. 3.Here, we investigated the acclimation response of two Temnothorax a…

0106 biological sciences0301 basic medicinePhenotypic plasticityTemnothoraxbiologyEcologyRange (biology)biology.organism_classification010603 evolutionary biology01 natural sciencesAcclimatizationBeneficial acclimation hypothesis03 medical and health sciences030104 developmental biologyEctothermTemperate climateDesiccationEcology Evolution Behavior and SystematicsFunctional Ecology
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Energy intake functions and energy budgets of ectotherms and endotherms derived from their ontogenetic growth in body mass and timing of sexual matur…

2017

Abstract Ectothermic and endothermic vertebrates differ not only in their source of body temperature (environment vs. metabolism), but also in growth patterns, in timing of sexual maturation within life, and energy intake functions. Here, we present a mathematical model applicable to ectothermic and endothermic vertebrates. It is designed to test whether differences in the timing of sexual maturation within an animal's life (age at which sexual maturity is reached vs. longevity) together with its ontogenetic gain in body mass (growth curve) can predict the energy intake throughout the animal's life (food intake curve) and can explain differences in energy partitioning (between growth, repro…

0106 biological sciences0301 basic medicineStatistics and ProbabilityOntogenymedia_common.quotation_subjectZoologyGrowth010603 evolutionary biology01 natural sciencesEndothermic processGeneral Biochemistry Genetics and Molecular BiologyBody Mass IndexBody Temperature03 medical and health sciencesbiology.animalAnimalsSexual maturitySexual Maturationmedia_commonGeneral Immunology and MicrobiologybiologyApplied MathematicsLongevityVertebrateThermogenesisGeneral MedicineGrowth curve (biology)Models Theoretical030104 developmental biologyModeling and SimulationEctothermVertebratesReproductionEnergy IntakeGeneral Agricultural and Biological SciencesJournal of Theoretical Biology
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Thermal variability during ectotherm egg incubation: A synthesis and framework.

2020

Natural populations of ectothermic oviparous vertebrates typically experience thermal variability in their incubation environment. Yet an overwhelming number of laboratory studies incubate animals under constant thermal conditions that cannot capture natural thermal variability. Here, we systematically searched for studies that incubated eggs of ectothermic vertebrates, including both fishes and herpetofauna, under thermally variable regimes. We ultimately developed a compendium of 66 studies that used thermally variable conditions for egg incubation. In this review, we qualitatively discuss key findings from literature in the compendium, including the phenotypic effects resulting from diff…

0106 biological sciences0301 basic medicineThermotoleranceFuture studiesPhysiologyFishesZoologyReptilesBiologyPerformance theory010603 evolutionary biology01 natural sciencesAmphibians03 medical and health sciences030104 developmental biologyEctothermGeneticsAnimalsAnimal Science and ZoologyOviparityMolecular BiologyIncubationEcology Evolution Behavior and SystematicsEgg incubationOvumJournal of experimental zoology. Part A, Ecological and integrative physiologyREFERENCES
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Adaptation to environmental stress at different timescales

2020

Environments are changing rapidly, and to cope with these changes, organisms have to adapt. Adaptation can take many shapes and occur at different speeds, depending on the type of response, the trait, the population, and the environmental conditions. The biodiversity crisis that we are currently facing illustrates that numerous species and populations are not capable of adapting with sufficient speed to ongoing environmental changes. Here, we discuss current knowledge on the ability of animals and plants to adapt to environmental stress on different timescales, mainly focusing on thermal stress and ectotherms. We discuss within-generation responses that can be fast and induced within minute…

0106 biological sciences0301 basic medicineTime FactorsEnvironmental changeAcclimatizationClimate Changemedia_common.quotation_subjectPopulationBiodiversity010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyEpigenesis Genetic03 medical and health sciencesHistory and Philosophy of ScienceStress PhysiologicalevolutionAnimalsHumansEcosystemeducationEcosystemPlant Physiological Phenomenamedia_commoneducation.field_of_studybusiness.industryGeneral NeuroscienceEnvironmental resource managementEnvironmental ExposurePlants15. Life on landAdaptation Physiologicalenvironmental stress030104 developmental biology13. Climate actionEctothermplasticityTraitEnvironmental sciencePsychological resilienceAdaptationbusinesstrangenerational effects
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Genome-Wide Profiling and Phylogenetic Analysis of the SWEET Sugar Transporter Gene Family in Walnut and Their Lack of Responsiveness to Xanthomonas …

2020

Following photosynthesis, sucrose is translocated to sink organs, where it provides the primary source of carbon and energy to sustain plant growth and development. Sugar transporters from the SWEET (sugar will eventually be exported transporter) family are rate-limiting factors that mediate sucrose transport across concentration gradients, sustain yields, and participate in reproductive development, plant senescence, stress responses, as well as support plant&ndash

0106 biological sciences0301 basic medicinephylogeny01 natural scienceslcsh:Chemistrywalnut blightTAL effectorType III Secretion Systems2.1 Biological and endogenous factorsAetiologylcsh:QH301-705.5SpectroscopyPlant Proteins<i>Xanthomonas</i>GeneticsGenomebiologyfood and beveragesSWEET sugar transportersGeneral MedicineSucrose transportComputer Science ApplicationsInfectious DiseasesMultigene Familygene familyJuglansXanthomonasPlant DevelopmentJuglansCatalysisInorganic Chemistry03 medical and health sciencesTAL effectorXanthomonasGeneticsGene familySugar transporterPhysical and Theoretical ChemistryMolecular BiologyGenePlant DiseasesChemical PhysicsOrganic ChemistryfungiMembrane Transport ProteinsBiological TransportXanthomonas arboricolaPlantbiology.organism_classification030104 developmental biologylcsh:Biology (General)lcsh:QD1-999Gene Expression Regulationgene expressionOther Biological SciencesOther Chemical Sciences010606 plant biology & botanyInternational Journal of Molecular Sciences
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Rapid adaptation to high temperatures in Chironomus riparius

2018

AbstractEffects of seasonal or daily temperature variation on fitness and physiology of ectothermic organisms and their ways to cope with such variations have been widely studied. However, the way multivoltines organisms cope with temperature variations from a generation to another is still not well understood and complex to identify. The aim of this study is to investigate whether the multivoltine midgeChironomus ripariusMeigen (1803) responds mainly via acclimation as predicted by current theories, or if rapid genetic adaptation is involved. To investigate this issue, a common garden approach has been applied. A mix of larvae from five European populations was raised in the laboratory at …

0106 biological sciences0301 basic medicineved/biology.organism_classification_rank.speciesZoologyacclimation010603 evolutionary biology01 natural sciencesChironomidaeAcclimatizationChironomidaeChironomidae ; climate ; acclimation ; temperature adaptation ; developmental temperature ; ectotherm03 medical and health sciencesddc:590temperature adaptationdevelopmental temperatureclimateectothermEcology Evolution Behavior and SystematicsNature and Landscape ConservationOriginal ResearchChironomus ripariusPhenotypic plasticityEcologybiologyved/biologyEcologyMortality rateVoltinismbiology.organism_classificationBiting030104 developmental biologyEctothermMidgeAdaptation
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