Search results for "Organisms"

showing 10 items of 726 documents

Much can change in a year: The massawan mantis shrimp, erugosquilla massavensis (Kossmann, 1880) in sicily, Italy

2019

A flourishing population of the Massawan mantis shrimp, Erugosquilla massavensis, an Erythraean species, is recorded off Sicily, Italy, one year after the very first specimen was collected off the eastern coast of the island. The species is already established as a minor, albeit valuable, fishery resource. Once its population increases, however, it may compete with the native Mediterranean spot-tail mantis shrimp, Squilla mantis. This article presents the results of a joint effort between members of the Museo Civico di Storia Naturale of Comiso and local fishermen to monitor non-indigenous species in Sicilian waters.

Fisheries -- Italy -- SicilyArthropodaDistribution (economics)Introduced speciesDistributionPopulation dynamicPopulation densityInvasive speciesErugosquillaMantis shrimpShrimps -- Italy -- SicilySquilla -- Italy -- SicilyMalacostracaSquillidaeEcology Evolution Behavior and SystematicsbiologyCompetitionEcologybusiness.industrybiology.organism_classificationShrimp populations -- Italy -- SicilyEcology Evolution Behavior and SystematicFisheryGeographyIntroduced organisms -- Italy -- SicilyFishery resourceSquilla mantis -- Italy -- SicilybusinessInvasive alien specieSquilla manti
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In Candida parapsilosis the ATC1 Gene Encodes for an Acid Trehalase Involved in Trehalose Hydrolysis, Stress Resistance and Virulence

2014

An ORF named CPAR2-208980 on contig 005809 was identified by screening a Candida parapsilosis genome data base. Its 67% identity with the acid trehalase sequence from C. albicans (ATC1) led us to designate it CpATC1. Homozygous mutants that lack acid trehalase activity were constructed by gene disruption at the two CpATC1 chromosomal alleles. Phenotypic characterization showed that atc1Δ null cells were unable to grow on exogenous trehalose as carbon source, and also displayed higher resistance to environmental challenges, such as saline exposure (1.2 M NaCl), heat shock (42°C) and both mild and severe oxidative stress (5 and 50 mM H2O2). Significant amounts of intracellular trehalose were …

Fungal PhysiologyMutantGlycobiologyTrehalase activitylcsh:MedicineMicrobiologiaPathogenesisPathology and Laboratory MedicineCandida parapsilosisBiochemistrychemistry.chemical_compoundNucleic AcidsMicrobial PhysiologyMedicine and Health SciencesTrehalaseTrehalaselcsh:ScienceFungal BiochemistryCandida albicansCandidaMultidisciplinaryVirulencebiologyOrganic CompoundsSalt ToleranceCatalaseEnzymesChemistryPhysical SciencesResearch ArticleGenes FungalMolecular Sequence DataCarbohydratesMycologyMicrobiologyMicrobiologyFungal ProteinsAmino Acid SequenceHeat shockGlycoproteinslcsh:ROrganismsFungiChemical CompoundsWild typeTrehaloseBiology and Life Sciencesbiology.organism_classificationTrehaloseYeastOxidative StressMetabolismchemistryProteolysisEnzymologylcsh:QHeat-Shock ResponsePLoS ONE
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Spatial Distribution of Fungal Communities in an Arable Soil.

2015

Fungi are prominent drivers of ecological processes in soils, so that fungal communities across different soil ecosystems have been well investigated. However, for arable soils taxonomically resolved fine-scale studies including vertical itemization of fungal communities are still missing. Here, we combined a cloning/Sanger sequencing approach of the ITS/LSU region as marker for general fungi and of the partial SSU region for arbuscular mycorrhizal fungi (AMF) to characterize the microbiome in different maize soil habitats. Four compartments were analyzed over two annual cycles 2009 and 2010: a) ploughed soil in 0-10 cm, b) rooted soil in 40-50 cm, c) root-free soil in 60-70 cm soil depth a…

Fungal StructureSoil ScienceSequence Databaseslcsh:MedicineCropsMycologyResearch and Analysis MethodsSoilDatabase and Informatics MethodsModel OrganismsPlant and Algal ModelsGrassesMolecular Biology TechniquesSequencing Techniqueslcsh:ScienceMolecular BiologySoil MicrobiologyEcologyMicrobiotaEcology and Environmental Scienceslcsh:ROrganismsFungiCorrectionBiology and Life SciencesAgricultureSoil EcologyPlantsYeastMaizeBiological DatabasesCommunity Ecologylcsh:QSequence AnalysisResearch ArticleCloningCrop ScienceCereal CropsPLoS ONE
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The nuclear protein Sge1 of Fusarium oxysporum is required for parasitic growth

2009

Dimorphism or morphogenic conversion is exploited by several pathogenic fungi and is required for tissue invasion and/or survival in the host. We have identified a homolog of a master regulator of this morphological switch in the plant pathogenic fungus Fusarium oxysporum f. sp. lycopersici. This non-dimorphic fungus causes vascular wilt disease in tomato by penetrating the plant roots and colonizing the vascular tissue. Gene knock-out and complementation studies established that the gene for this putative regulator, SGE1 (SIX Gene Expression 1), is essential for pathogenicity. In addition, microscopic analysis using fluorescent proteins revealed that Sge1 is localized in the nucleus, is no…

FusariumQH301-705.5[SDV]Life Sciences [q-bio]ImmunologyGenes FungalMolecular Sequence Datachampignon phytopathogèneMicrobiologyPlant RootsMicrobiologyHost-Parasite InteractionsFungal ProteinsFusariumSolanum lycopersicumVirologyGene Expression Regulation FungalFusarium oxysporumGeneticsAmino Acid SequenceBiology (General)Cloning MolecularMolecular BiologyVascular tissuePhylogenyWilt diseaseRegulation of gene expressionCell NucleusFungal proteinbiologyOrganisms Genetically ModifiedSequence Homology Amino AcidEffectorfungifood and beveragesNuclear ProteinsPathogenic fungusRC581-607Microbiology/Plant-Biotic Interactionsbiology.organism_classificationPathology/Molecular Pathology[SDE]Environmental SciencesParasitologyImmunologic diseases. AllergyResearch ArticleTranscription FactorsPLoS Pathogens
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Horizontal gene transfer of atrazine-degrading genes (atz) from Agrobacterium tumefaciens St96-4 pADP1::Tn5 to bacteria of maize-cultivated soil

2005

International audience; The plasmid pADP1::Tn5 derived from pADP1[Atr(+)] carrying a TnS transposon conferring kanamycin and streptomycin resistances was constructed and introduced in Agrobacterium tumefaciens St96-4. This genetically modified strain was inoculated (similar to 108 cfu g(-1)) in potted soils planted with maize and treated or not with atrazine (1.5 mg kg(-1)). Bulk and maize rhizosphere soils were sampled 39 days after planting to look for soil indigenous bacteria that had acquired pADP1::Tn5. Four transconjugants were isolated from four different soil samples. The estimated transfer frequency of pADP1::Tn5 was 10(-4) per donor. Maize rhizosphere and atrazine treatment had no…

Gene Transfer HorizontalATRAZINE[SDV]Life Sciences [q-bio]BIODEGRADATIONZea mays03 medical and health scienceschemistry.chemical_compoundBotanymedicineATZ GENESAtrazinePhylogenySoil Microbiology030304 developmental biology2. Zero hunger0303 health sciencesRhizospherebiologyOrganisms Genetically Modified030306 microbiologyHerbicidesGenetic transferHORIZONTAL GENE TRANSFERKanamycinGeneral MedicineGene rearrangementAgrobacterium tumefaciensVariovoraxbiochemical phenomena metabolism and nutritionbiology.organism_classificationBiodegradation EnvironmentalchemistryAgrobacterium tumefaciensInsect ScienceConjugation Genetic[SDE]Environmental SciencesbacteriaAgronomy and Crop ScienceBacteriamedicine.drug
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Overexpression of TGF-ß1 in macrophages reduces and stabilizes atherosclerotic plaques in ApoE-deficient mice.

2011

Although macrophages represent the hallmark of both human and murine atherosclerotic lesions and have been shown to express TGF-ß1 (transforming growth factor β1) and its receptors, it has so far not been experimentally addressed whether the pleiotropic cytokine TGF-ß1 may influence atherogenesis by a macrophage specific mechanism. We developed transgenic mice with macrophage specific TGF-ß1 overexpression, crossed the transgenics to the atherosclerotic ApoE (apolipoprotein E) knock-out strain and quantitatively analyzed both atherosclerotic lesion development and composition of the resulting double mutants. Compared with control ApoE(-/-) mice, animals with macrophage specific TGF-ß1 overe…

Genetically modified mouseApolipoprotein Emedicine.medical_specialtyPathologyHistologyMouseSciencemedicine.medical_treatmentImmune CellsImmunologyAntigen-Presenting CellsMice TransgenicBiologyCardiovascularLesionTransforming Growth Factor beta1MiceApolipoproteins EModel OrganismsVascular BiologyInternal medicinemedicineGeneticsMacrophageAnimalsReceptorBiologyMice KnockoutMultidisciplinaryMacrophagesQRAnimal ModelsAtherosclerosisImmunohistochemistryPlaque AtheroscleroticCytokineEndocrinologyImmunohistochemistryMedicineFemalemedicine.symptomGene FunctionTransforming growth factorResearch ArticlePloS one
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Mutated cylindromatosis gene affects the functional state of dendritic cells

2010

Cylindromatosis gene (CYLD) is a ubiquitously expressed deubiquitinating enzyme, which interacts with members of the NF-κB signaling pathway and attenuates NF-κB and JNK signaling. Here, we report that DC derived from transgenic mice, which solely express a naturally occurring CYLD isoform (CYLD(ex7/8)), display a higher content of nuclear RelB and express elevated levels of NF-κB family members as well as of known NF-κB-target genes comprising costimulatory molecules and pro-inflammatory cytokines, as compared with WT DC. Accordingly, unstimulated CYLD(ex7/8) DC exhibited a significantly higher primary allogenic T-cell stimulatory capacity than WT DC and exerted no tolerogenic activity. Tr…

Genetically modified mouseTransgeneBlotting WesternImmunologyMice TransgenicBiologyDexamethasoneDeubiquitinating enzymeSmall hairpin RNAMiceImmune ToleranceAnimalsImmunology and AllergyGlucocorticoidsMice KnockoutReverse Transcriptase Polymerase Chain ReactionTumor Suppressor ProteinsRELBTranscription Factor RelBNF-kappa BPeripheral toleranceCell DifferentiationDendritic CellsFlow CytometrySpecific Pathogen-Free OrganismsCell biologyIsoenzymesTranscription Factor AP-1MutationKnockout mouseImmunologybiology.proteinRNAFemaleSignal transductionSignal TransductionEuropean Journal of Immunology
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Immune characterization of the HBHA-specific response in Mycobacterium tuberculosis-infected patients with or without HIV infection.

2017

Introduction RD1-based Interferon-γ Release Assays (IGRAs) cannot distinguish latent from active tuberculosis (TB) disease. Conversely, a positive response to heparin-binding haemagglutinin (HBHA)-based IGRAs, among TB-infected subjects, correlates with Mycobacterium tuberculosis (Mtb) containment and low risk of TB progression. The aim of this study was to characterize HBHA-immune responses in HIV-infected and uninfected subjects with active TB or latent TB infection (LTBI). Methods 49 subjects were prospectively enrolled: 22 HIV-uninfected (13 TB, 9 LTBI) and 27 HIV-infected (12 HIV-TB, 15 HIV-LTBI). Whole blood and peripheral blood mononuclear cells were stimulated with HBHA and RD1 anti…

Genetics and Molecular Biology (all)0301 basic medicineBacterial DiseasesRNA virusesCD4-Positive T-LymphocytesMalePhysiologylcsh:MedicineHIV InfectionsCD8-Positive T-LymphocytesPathology and Laboratory MedicineBiochemistryMemory T cellsWhite Blood CellsImmunodeficiency VirusesInterferonAnimal CellsImmune PhysiologyLectinsMedicine and Health SciencesProspective Studieslcsh:ScienceInnate Immune SystemMultidisciplinarybiologyT CellsInterleukinvirus diseasesMiddle AgedFlow Cytometry3. Good healthActinobacteriaInfectious DiseasesMedical MicrobiologyViral PathogensVirusesDisease ProgressionCytokinesFemaleCellular TypesPathogensmedicine.drugResearch ArticleAdultTuberculosisImmune CellsImmunologyCytotoxic T cellsEnzyme-Linked Immunosorbent AssayPeripheral blood mononuclear cellMicrobiologySettore MED/07 - MICROBIOLOGIA E MICROBIOLOGIA CLINICAMycobacterium tuberculosis03 medical and health sciencesInterferon-gammaImmune systemAntigenRetrovirusesmedicineTuberculosisHumansMicrobial PathogensAdult; CD4-Positive T-Lymphocytes; CD8-Positive T-Lymphocytes; Cytokines; Disease Progression; Enzyme-Linked Immunosorbent Assay; Female; Flow Cytometry; HIV Infections; Humans; Interferon-gamma; Lectins; Male; Middle Aged; Prospective Studies; Tuberculosis; Biochemistry Genetics and Molecular Biology (all); Agricultural and Biological Sciences (all)Blood CellsBacteriaLentiviruslcsh:ROrganismsBiology and Life SciencesProteinsHIVCell BiologyMolecular Developmentbiology.organism_classificationmedicine.diseaseTropical DiseasesVirology030104 developmental biologyAgricultural and Biological Sciences (all)Immune SystemImmunologylcsh:QInterferonsCD8Mycobacterium TuberculosisDevelopmental BiologyPLoS ONE
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Sex difference in the interaction of alcohol intake, hepatitis B virus, and hepatitis C virus on the risk of cirrhosis

2017

Background The joint effect of the interaction of alcohol intake, hepatitis B virus (HBV) and hepatitis C virus (HCV) on the risk of cirrhosis is still unexplored because a large sample size is required for this investigation. Objective Evaluation of interaction of HBV, HCV and alcohol abuse on the risk of cirrhosis. Design We analysed 12,262 consecutive patients with chronic liver disease of various aetiologies referring to 95 Italian liver units in 2001 or 2014. To evaluate the interaction between alcohol abuse, HBV infection, and HCV infection, patients unexposed to either factors were used as reference category. Adjustment for BMI and age was done by multiple logistic regression analysi…

Genetics and Molecular Biology (all)0301 basic medicineLiver CirrhosisRNA virusesMaleChronic HepatitisCirrhosislcsh:MedicineAlcohol abuseHepacivirusSex FactorChronic liver diseasemedicine.disease_causeBiochemistryGastroenterologyChronic Liver Disease0302 clinical medicineRisk FactorsMedicine and Health Scienceslcsh:SciencePathology and laboratory medicineMultidisciplinaryAlcohol ConsumptionHepatitis C virusLiver DiseasesFatty livervirus diseasesHepatitis CHepatitis BMedical microbiologyMiddle AgedHepatitis BHepatitis CCirrhosisOncologyVirusesCoinfection030211 gastroenterology & hepatologyFemalePathogensResearch ArticleHumanAdultmedicine.medical_specialtyHepatitis B virusAlcohol DrinkingLiver CirrhosiGastroenterology and HepatologyMicrobiologyCarcinomas03 medical and health sciencesSex FactorsInternal medicineGastrointestinal TumorsmedicineHumansNutritionAgedHepatitis B virusBiochemistry Genetics and Molecular Biology (all)Flavivirusesbusiness.industryRisk Factorlcsh:ROrganismsViral pathogensBiology and Life SciencesCancers and NeoplasmsHepatocellular Carcinomamedicine.diseaseVirologydigestive system diseasesHepatitis virusesAdult; Aged; Alcohol Drinking; Female; Hepatitis B; Hepatitis C; Humans; Liver Cirrhosis; Male; Middle Aged; Risk Factors; Sex Factors; Biochemistry Genetics and Molecular Biology (all); Agricultural and Biological Sciences (all)DietMicrobial pathogensFatty Liver030104 developmental biologyAgricultural and Biological Sciences (all)lcsh:Qbusiness
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Geosphere-biosphere interactions in bio-activity volcanic lakes: Evidences from Hule and Rìo Cuarto (Costa Rica)

2014

Hule and R ́ıo Cuarto are maar lakes located 11 and 18 km N of Poa ́s volcano along a 27 km long fracture zone, in the Central Volcanic Range of Costa Rica. Both lakes are characterized by a stable thermic and chemical stratification and recently they were affected by fish killing events likely related to the uprising of deep anoxic waters to the surface caused by rollover phenomena. The vertical profiles of temperature, pH, redox potential, chemical and isotopic compositions of water and dissolved gases, as well as prokaryotic diversity estimated by DNA fingerprinting and massive 16S rRNA pyrosequencing along the water column of the two lakes, have highlighted that different bio-geochemica…

Genetics and Molecular Biology (all)Aerobic bacterialcsh:MedicineMarine and Aquatic Sciencestrace elementsSettore BIO/19 - Microbiologia GeneraleBiochemistryWater columnBiochemistry Genetics and Molecular Biology (all); Agricultural and Biological Sciences (all)RNA Ribosomal 16SLimnologylcsh:SciencePhylogenyTotal organic carbonMultidisciplinarygeography.geographical_feature_categoryEcologyBiosphereBiogeochemistryHydrogen-Ion ConcentrationAnoxic watersMaarChemistryOceanographyPhysical SciencesMethaneOxidation-ReductionResearch ArticleFreshwater EnvironmentsCosta RicaSettore BIO/07 - EcologiaVolcanic EruptionsCarbon CycleHydrothermal VentsEnvironmental ChemistryMolecular Biology TechniquesSequencing TechniquesMolecular BiologygeographyVolcanic lakeBacterialcsh:RHigh Throughput SequencingEcology and Environmental SciencesOrganismsChemical CompoundsBiology and Life SciencesAquatic EnvironmentsCarbon DioxideArchaeaDNA FingerprintingOxygenLakesGeochemistryVolcanoAgricultural and Biological Sciences (all)Settore GEO/08 - Geochimica e VulcanologiaEarth SciencesEnvironmental sciencelcsh:QSurface water
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