Search results for "OxyR"

showing 10 items of 216 documents

CCDC 251468: Experimental Crystal Structure Determination

2004

Related Article: J.R.Hanson, P.B.Hitchcock, I.Pibiri, F.Piozzi|2003|J.Chem.Res.||147|doi:10.3184/030823403103173291

Space GroupCrystallographyCrystal SystemCrystal Structure12alpha-HydroxyrosenonolactoneCell ParametersExperimental 3D Coordinates
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CCDC 251469: Experimental Crystal Structure Determination

2004

Related Article: J.R.Hanson, P.B.Hitchcock, I.Pibiri, F.Piozzi|2003|J.Chem.Res.||147|doi:10.3184/030823403103173291

Space GroupCrystallographyCrystal SystemCrystal StructureCell ParametersExperimental 3D Coordinates15S16-Dihydroxyrosenonolactone monohydrate
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The purification and properties of nucleoside phosphotransferase from mucosa of chicken intestine

1984

Abstract (1) Nucleoside phosphotransferase (nucleotide:3′-deoxynucleoside 5′-phosphotransferase, EC 2.7.1.77) has been purified from chicken intestine mucosa to apparent homogeneity. The enzyme is represented by a multisubunit protein at different degrees of association. It can dissociate into a compoenent with a marked fall in catalytic activity. (2) The associated forms are similar to the enzyme previously purified from chick embryo as regards: substrate specificity both with respect to nucleoside monophosphate donors and to deoxyribonucleoside acceptors; sigmoidicity in the rate curve with a variable phosphate donor; instability to heat, dilution and lowering of pH; the activating and pr…

StereochemistryCations DivalentProtein subunitBiophysicsBiologyBiochemistrychemistry.chemical_compoundStructural BiologySettore BIO/10 - BiochimicaNucleoside phosphotransferaseCentrifugation Density GradientAnimalsUreaNucleotideEnzyme kineticsIntestinal MucosaMolecular Biologychemistry.chemical_classificationNucleotidesPhosphotransferasesPhosphatenucleoside phosphotransferaseDeoxyuridineDeoxyribonucleosideMolecular WeightKineticsEnzymechemistryBiochemistryAlcoholsChromatography GelElectrophoresis Polyacrylamide GelChickens
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Oxidative nuclease activity of ferromagnetically coupled μ-hydroxo-μ-propionato copper(II) complexes [Cu3(L)2(μ-OH)2(μ-propionato)2] (L=N-(pyrid-2-yl…

2008

Three doubly-bridged, trinuclear copper(II) compounds with hydroxo and carboxylato bridges, ∞ 1 [Cu 3 (L1) 2 (μ-OH) 2 (μ-propionato) 2 ] ∞ 1 [ Cu 3 ( L 1 ) 2 ( μ - OH ) 2 ( μ - propionato ) 2 ] (1) , [Cu 3 (L2) 2 (μ-OH) 2 (μ-propionato) 2 (DMF) 2 ] (2) and ∞ 1 {[Cu 3 (L3) 2 (μ-OH) 2 (μ-propionato) 2 ]} ∞ 1 { [ Cu 3 ( L 3 ) 2 ( μ - OH ) 2 ( μ - propionato ) 2 ] } [Cu 3 (L3) 2 (μ-OH) 2 (μ-propionato) 2 (DMF) 2 ]} (3) [HL1 =  N -(pyrid-2-ylmethyl)benzenesulfonylamide, HL2 =  N -(pyrid-2-ylmethyl)toluenesulfonylamide, HL3 =  N -(pyrid-2-ylmethyl)naphthalenesulfonylamide], have been synthesized and characterized. 1 is built from [Cu 3 (L1) 2 (μ-OH) 2 (μ-propionato) 2 ] clusters. Each unit contai…

StereochemistryCoordination polymerKineticschemistry.chemical_elementNaphthalenesCrystallography X-RayCleavage (embryo)Ferric CompoundsBiochemistryInorganic Chemistrychemistry.chemical_compoundOrganometallic CompoundsDNA CleavageBenzeneDeoxyribonucleasesMolecular StructureBenzeneDNACopperTolueneMagnetic susceptibilityKineticsCrystallographychemistryDrug DesignCyclic voltammetryOxidation-ReductionCopperTolueneJournal of Inorganic Biochemistry
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Multitasking Water-Soluble Synthetic G-Quartets: From Preferential RNA-Quadruplex Interaction to Biocatalytic Activity

2013

Natural G-quartets, a cyclic and coplanar array of four guanine res- idues held together through a Watson- Crick/Hoogsteen hydrogen-bond net- work, have received recently much at- tention due to their involvement in G- quadruplex DNA, an alternative higher-order DNA structure strongly suspected to play important roles in key cellular events. Besides this, syn- thetic G-quartets (SQ), which artificial- ly mimic native G-quartets, have also been widely studied for their involve- ment in nanotechnological applications (i.e., nanowires, artificial ion channels, etc.). In contrast, intramolecular syn- thetic G-quartets (iSQ), also named template-assembled synthetic G-quar- tets (TASQ), have been…

StereochemistryGuanineSupramolecular chemistryDeoxyribozyme010402 general chemistryG-QuartetsG-quadruplex01 natural sciencesCatalysischemistry.chemical_compound[CHIM]Chemical SciencesComputingMilieux_MISCELLANEOUS010405 organic chemistryOrganic ChemistryWaterRNADNAGeneral Chemistry0104 chemical sciencesG-QuadruplexeschemistryIntramolecular forceBiocatalysisHeminRNAOxidation-ReductionDNA
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DNA interaction of CuII, NiII and ZnII functionalized salphen complexes: studies by linear dichroism, gel electrophoresis and PCR.

2013

The interaction of salphen-type NiII, CuII and ZnII complexes with native DNA was investigated by exploiting linear dichroism experiments. The NiII complex behaves as a typical intercalator, binding strongly and stiffening and unwinding the DNA. The strength of the DNA interaction is slightly weaker for the copper complex and much weaker for the zinc complex. Plasmid-DNA gel electrophoresis experiments indicated that while CuII and ZnII complexes do not induce the unwinding of supercoiled DNA, the NiII complex has a nuclease activity without the addition of external agents. On the other hand, as shown in the PCR assays, we demonstrate that, at the used concentrations, only the CuII complex …

StereochemistryIntercalation (chemistry)Molecular Conformationchemistry.chemical_elementZincPhenylenediaminesLinear dichroismCrystallography X-RayPolymerase Chain ReactionInorganic Chemistrychemistry.chemical_compoundBiomimetic MaterialsCoordination ComplexesNickelGel electrophoresisElectrophoresis Agar GelNucleaseDeoxyribonucleasesbiologyCircular DichroismDNASettore CHIM/08 - Chimica FarmaceuticaCopperCrystallographyZincAnticancerchemistrySettore CHIM/03 - Chimica Generale E Inorganicabiology.proteinDNA supercoilMetal complexeDNACopperDalton transactions (Cambridge, England : 2003)
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The interaction of S,N-coordinated dimethyltin(IV) derivatives with deoxyribonucleic acid: structure and dynamics by119Sn Mössbauer spectroscopy

1999

Complexes Me2SnCl(SPy) and Me2SnCl(SPym) (HSPy = 2-mercaptopyridine; HSPym = 2-mercaptopyrimidine), from ethanol solutions, interact with aqueous calf-thymus DNA yielding condensed phases with probable Me2Sn(SPy,SPym) (DNA monomer) stoichiometries of 1:1; the condensation of DNA is inferred originated from electrostatic bonding between complex cations Me2Sn(SPy,SPym)+ and the phosphate oxygen of the phosphodiester groups. Octahedral-or trigonal-bipyramidal tin environments are inferred from the point-charge model treatment of the 119Sn Mossbauer parameter nuclear quadrupole splitting, considering the bonding by S and N, or only S donor atoms from the ligand, as well as possible coordination…

StereochemistryLigandGeneral ChemistryQuadrupole splittingDNA condensationInorganic Chemistrychemistry.chemical_compoundDeoxyribonucleotideCrystallographyMonomerchemistryPhosphodiester bondMoleculeDNAApplied Organometallic Chemistry
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Synthesis, structure, and nuclease properties of several binary and ternary complexes of copper(II) with norfloxacin and 1,10 phenantroline

2007

Three new binary Cu(II) complexes of norfloxacin have been synthesized and characterized. We also report the synthesis, characterization and X-ray crystallographic structures of a new binary compound, [Cu(HNor)(2)]Cl(2).2H(2)O (2) and two new ternary complexes norfloxacin-copper(II)-phen, [Cu(Nor)(phen)(H(2)O)](NO(3)).3H(2)O (4), and [Cu(HNor)(phen)(NO(3))](NO(3)).3H(2)O (5). The structure of 2 consists of two crystallographically independent cationic monomeric units of [Cu(HNor)(2)](2+), chloride anions, and uncoordinated water molecules. The Cu(II) ion is placed at a center of symmetry and is coordinated to two norfloxacin ligands which are related through the inversion center. The struct…

StereochemistryRadicalBinary compoundCrystallography X-RayBiochemistryInorganic ChemistryMetalchemistry.chemical_compoundTandem Mass SpectrometrySpectroscopy Fourier Transform InfraredOrganometallic CompoundsMoleculeDeoxyribonucleasesMolecular StructureCationic polymerizationSquare pyramidal molecular geometryCrystallographyMonomerchemistryvisual_artvisual_art.visual_art_mediumSpectrophotometry UltravioletTernary operationCopperFluoroquinolonesNorfloxacinPhenanthrolinesJournal of Inorganic Biochemistry
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2015

Propargyl groups are attractive functional groups for labeling purposes, as they allow CuAAC-mediated bioconjugation. Their size minimally exceeds that of a methyl group, the latter being frequent in natural nucleotide modifications. To understand under which circumstances propargyl-containing oligodeoxynucleotides preserve base pairing, we focused on the exocyclic amine of cytidine. Residues attached to the exocyclic N4 may orient away from or toward the Watson-Crick face, ensuing dramatic alteration of base pairing properties. ROESY-NMR experiments suggest a uniform orientation toward the Watson-Crick face of N(4)-propargyl residues in derivatives of both deoxycytidine and 5-methyl-deoxyc…

Steric effectsBase pairStereochemistryCytidineMolecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic AcidBiologychemistry.chemical_compoundchemistryBiochemistryPropargylGeneticsMoietyCytosineMethyl groupNucleic Acids Research
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Synthesis of oligodeoxynucleotides containing diastereomeric dihydrodiol epoxide-N6-deoxyadenosine adducts of polycyclic aromatic hydrocarbons

1993

Abstract A generally applicable route is reported for the synthesis of oligodeoxynucleotides which contain structurally defined N 6 -deoxyadenosine adducts, derived from sterically highly hindered dihydrodiol epoxides of polycyclic aromatic hydrocarbons (PAH).

Steric effectsOligonucleotideStereochemistryOrganic ChemistryDiastereomerEpoxideBiochemistryAdductDeoxyribonucleosidechemistry.chemical_compoundDeoxyribonucleotidechemistryDeoxyadenosineDrug DiscoveryOrganic chemistryTetrahedron Letters
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