Search results for "PHYLOGEOGRAPHY"

showing 10 items of 199 documents

Long-Distance Travellers: Phylogeography of a Generalist Parasite, Pholeter gastrophilus, from Cetaceans

2017

We studied the phylogeography and historical demography of the most generalist digenean from cetaceans, Pholeter gastrophilus, exploring the effects of isolation by distance, ecological barriers and hosts' dispersal ability on the population structure of this parasite. The ITS2 rDNA, and the mitochondrial COI and ND1 from 68 individual parasites were analysed. Worms were collected from seven oceanic and coastal cetacean species from the south western Atlantic (SWA), central eastern Atlantic, north eastern Atlantic (NEA), and Mediterranean Sea. Pholeter gastrophilus was considered a single lineage because reciprocal monophyly was not detected in the ML cladogram of all individuals, and seque…

0106 biological sciences0301 basic medicineHeredityTroglotrematidaePopulation Dynamicslcsh:MedicinePopulation geneticsMarine and Aquatic SciencesPathogenesisGeneralist and specialist speciesPathology and Laboratory Medicine01 natural sciencesMonophylyDatabase and Informatics MethodsOceansMedicine and Health Scienceslcsh:ScienceAtlantic OceanMammalseducation.field_of_studyLikelihood FunctionsMultidisciplinaryGeographyReproductive isolationDNA HelminthPhylogeographyGenetic MappingBiogeographyVertebratesHost-Pathogen InteractionsSequence AnalysisResearch ArticleReproductive IsolationBioinformaticsGenetic SpeciationDolphinsPopulationZoologyMarine BiologyBiologyResearch and Analysis Methods010603 evolutionary biology03 medical and health sciencesBodies of waterGeneticsMediterranean SeaAnimalseducationMarine MammalsIsolation by distanceDemographyEvolutionary BiologyAnalysis of VariancePopulation BiologyPilot Whaleslcsh:REcology and Environmental SciencesOrganismsWhalesBiology and Life SciencesGenetic VariationSequence Analysis DNAPhylogeography030104 developmental biologyHaplotypesAmniotesEarth SciencesBiological dispersallcsh:QCetaceaPopulation GeneticsPLoS ONE
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A hierarchical Bayesian Beta regression approach to study the effects of geographical genetic structure and spatial autocorrelation on species distri…

2019

Global climate change (GCC) may be causing distribution range shifts in many organisms worldwide. Multiple efforts are currently focused on the development of models to better predict distribution range shifts due to GCC. We addressed this issue by including intraspecific genetic structure and spatial autocorrelation (SAC) of data in distribution range models. Both factors reflect the joint effect of ecoevolutionary processes on the geographical heterogeneity of populations. We used a collection of 301 georeferenced accessions of the annual plant Arabidopsis thaliana in its Iberian Peninsula range, where the species shows strong geographical genetic structure. We developed spatial and nonsp…

0106 biological sciences0301 basic medicineHierarchical Bayesian modelsArabidopsis thalianaRange (biology)Bayesian probabilitySpecies distributionArabidopsisGenetic admixtureBiologyResidual010603 evolutionary biology01 natural sciences03 medical and health sciencesAfrica NorthernStatisticsGeneticsSpatial analysisEcology Evolution Behavior and SystematicsSpatial AnalysisPortugalPlant DispersalGenetic heterogeneityGlobal climate changePhylogeographyGenetics Population030104 developmental biologySpainGenetic structureGeographic genetic structureMaxentPeptidesSpatial autocorrelationBiotechnology
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The long journey of Orthotrichum shevockii (Orthotrichaceae, Bryopsida): From California to Macaronesia

2019

Biogeography, systematics and taxonomy are complementary scientific disciplines. To understand a species' origin, migration routes, distribution and evolutionary history, it is first necessary to establish its taxonomic boundaries. Here, we use an integrative approach that takes advantage of complementary disciplines to resolve an intriguing scientific question. Populations of an unknown moss found in the Canary Islands (Tenerife Island) resembled two different Californian endemic species: Orthotrichum shevockii and O. kellmanii. To determine whether this moss belongs to either of these species and, if so, to explain its presence on this distant oceanic island, we combined the evaluation of…

0106 biological sciences0301 basic medicineLeavesPlant ScienceBryology01 natural sciencesGeographical locationsCaliforniaNonvascular PlantsPhylogenyData ManagementMultidisciplinaryPhylogenetic analysisbiologyPlant AnatomyQREukaryotaPhylogenetic AnalysisPlantsClassification3. Good healthPhylogeneticsPhylogeographyGeographyMedicineTaxonomy (biology)Research ArticleSystematicsComputer and Information SciencesScienceBiogeographyCanary Islands010603 evolutionary biologyEvolution Molecular03 medical and health sciencesOrthotrichumMossesEvolutionary SystematicsNonvascular plantsOrthotrichaceaeEndemismTaxonomyEvolutionary BiologyBotánicaOrganismsBiology and Life SciencesSequence Analysis DNA15. Life on landbiology.organism_classificationBryopsidaUnited States030104 developmental biologyTaxonSpainEvolutionary biologyAfricaNorth AmericaBiological dispersalPeople and places
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Origin and distribution of desert ants across the Gibraltar Straits

2017

The creation of geographic barriers has long been suspected to contribute to the formation of new species. We investigated the phylogeography of desert ants in the western Mediterranean basin in order to elucidate their mode of diversification. These insects which have a low dispersal capacity are recently becoming important model systems in evolutionary studies. We conducted an extensive sampling of species belonging to the Cataglyphis albicans group in the Iberian Peninsula (IP) and the northern Morocco (North Africa; NA). We then combined genetic, chemical and morphological analyses. The results suggest the existence of at least three and five clades in the IP and NA, respectively, whose…

0106 biological sciences0301 basic medicineMaleParapatric speciation01 natural sciencesMediterranean BasinMonophylyfylogeografiaAfrica NorthernmuurahaisetPhylogenyComputingMilieux_MISCELLANEOUS[SDV.EE]Life Sciences [q-bio]/Ecology environmentLikelihood FunctionsPrincipal Component AnalysisbiologyEcologyCataglyphisDiscriminant Analysisgenital traitsBiological EvolutionEuropeMoroccoPhylogeographyAllopatric speciation010603 evolutionary biologythermophilyModels Biological03 medical and health sciencesGeneticsAnimalsMolecular BiologyEcology Evolution Behavior and SystematicsDemographyGibraltarAntscuticular hydrocarbonsGenetic VariationBayes Theorem15. Life on landbiology.organism_classificationHydrocarbonsEnvironmental niche modellingPhylogeography030104 developmental biologyCataglyphisglaciationsBiological dispersalta1181Microsatellite Repeats[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosis
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Gene flow in the European coal tit, Periparus ater (Aves: Passeriformes): Low among Mediterranean populations but high in a continental contact zone

2018

Abstract Extant phylogeographical patterns of Palearctic terrestrial vertebrates are generally believed to have originated from glacial range fragmentation. Post-Pleistocene range expansions have led to the formation of secondary contact zones among genetically distinct taxa. For coal tits (Periparus ater), such a contact zone has been localized in Germany. In this study, we quantified gene flow between Fennoscandian and southern European coal tits using a set of 13 microsatellite loci. STRUCTURE analysis revealed four genetic clusters, two occurring on Mediterranean islands. German populations were genetically admixed but introgression of southern alleles was evident for Fennoscandian popu…

0106 biological sciences0301 basic medicineMediterranean climatePeriparusIsland populationZoologyphylogeographySubspeciesGlacial refugia010603 evolutionary biology01 natural sciencesmicrosatellitesGene flow03 medical and health sciencesContact zoneCoalglacial refugiaEcology Evolution Behavior and Systematicsbiologybusiness.industryMicrosatelliteSubspeciesbiology.organism_classificationPhylogeographyPhylogeography030104 developmental biologyisland populationssubspeciesbusiness
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The loss of dispersal on islands hypothesis revisited: Implementing phylogeography to investigate evolution of dispersal traits in Periploca (Apocyna…

2017

Aim: The loss of dispersal on islands hypothesis (LDIH) posits that wind-dispersed plants should exhibit reduced dispersal potential, particularly if island populations are old. In this study, we tested this hypothesis using a detailed phylogeographical framework across different geographical scales. Location: Mainland and island areas of the Atlantic and Mediterranean regions, including Macaronesia (Canary Islands and Cape Verde) and Mediterranean islands in the strait of Sicily. Methods: Forty-five populations of Periploca laevigata, a wind-dispersed shrub, were sampled. Plastid and nuclear microsatellite data were used to reconstruct spatio-temporal patterns of island colonization, and e…

0106 biological sciences0301 basic medicineMediterranean climateSettore BIO/07 - EcologiaSeed dispersalanemochory dispersal ability island colonization Macaronesia parallel evolution seed dispersal010603 evolutionary biology01 natural sciencesCape verde03 medical and health sciencesisland colonizationAnemochoryPeriplocadispersal abilityEcology Evolution Behavior and SystematicsMacaronesia parallel evolutionEcologybiologyEcologybiology.organism_classificationseed dispersalPhylogeography030104 developmental biologySettore BIO/03 - Botanica Ambientale E ApplicataBiological dispersalMainlandMediterranean Islands
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Patterns of genetic diversity and structure in Antarctic and sub-Antarctic Nacella (Patellogastropoda: Nacellidae) species.

2016

10 pages; International audience; The biogeography of the Southern Ocean reflects complex interactions between major macro-evolutionary forces and biotic elements. Major gateway openings, the establishment of the Antarctic Circumpolar Current and climate cooling are deeply connected to the composition, abundance and distribution of the Southern Ocean marine benthic fauna. Glacial episodes of the Quaternary heavily impacted the distribution of the genetic variation of the Southern Ocean biota. The genus Nacella includes 12 nominal species in different provinces of the Southern Ocean. In this study, we compared patterns of mitochondrial DNA diversity in three Nacella species from Antarctic Pe…

0106 biological sciences0301 basic medicineNacellaAntarctic Circumpolar CurrentNacellaBiogeographyFauna[SDV.BID]Life Sciences [q-bio]/Biodiversityphylogeography010603 evolutionary biology01 natural sciences03 medical and health sciencesPatellogastropoda14. Life underwaterGlacial periodSouthern OceanbiogeographyNature and Landscape Conservation[ SDV.BID ] Life Sciences [q-bio]/BiodiversityGlobal and Planetary ChangeGenetic diversity[ SDE.BE ] Environmental Sciences/Biodiversity and EcologyEcologybiologyLast Glacial MaximumEcologyLast Glacial Maximumbiology.organism_classification030104 developmental biologyGenetic structure[SDE.BE]Environmental Sciences/Biodiversity and Ecology
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Genome analysis of the monoclonal marbled crayfish reveals genetic separation over a short evolutionary timescale

2021

The marbled crayfish (Procambarus virginalis) represents a very recently evolved parthenogenetic freshwater crayfish species that has invaded diverse habitats in Europe and in Madagascar. However, population genetic analyses have been hindered by the homogeneous genetic structure of the population and the lack of suitable tools for data analysis. We have used whole-genome sequencing to characterize reference specimens from various known wild populations. In parallel, we established a whole-genome sequencing data analysis pipeline for the population genetic analysis of nearly monoclonal genomes. Our results provide evidence for systematic genetic differences between geographically separated …

0106 biological sciences0301 basic medicinePopulation geneticsQH301-705.5ParthenogenesisPopulationMedicine (miscellaneous)Population geneticsAstacoideaBiology010603 evolutionary biology01 natural sciencesGenomeArticleEvolutionary geneticsGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesAnimalsvieraslajitBiology (General)Population GrowthEvolutionary dynamicseducationgenome analysiseducation.field_of_studyGenomeInvasive speciescrayfishHuman evolutionary geneticspartenogeneesiPopulation sizemusculoskeletal neural and ocular physiologygenomiikkaCrayfishBiological EvolutionEuropePhylogeography030104 developmental biologynervous systemEvolutionary biologyGenetic structurearticleslajiutuminenProcambarus virginalisGeneral Agricultural and Biological SciencesravutCommunications Biology
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Getting there and around: Host range oscillations during colonization of the Canary Islands by the parasitic nematode Spauligodon

2016

Episodes of expansion and isolation in geographic range over space and time, during which parasites have the opportunity to expand their host range, are linked to the development of host-parasite mosaic assemblages and parasite diversification. In this study, we investigated whether island colonization events lead to host range oscillations in a taxon of host-specific parasitic nematodes of the genus Spauligodon in the Canary Islands. We further investigated whether range oscillations also resulted in shifts in host breadth (i.e., specialization), as expected for parasites on islands. Parasite phylogeny and divergence time estimates were inferred from molecular data with Bayesian methods. H…

0106 biological sciences0301 basic medicineRange (biology)BiologyDNA Mitochondrial010603 evolutionary biology01 natural sciencesHost SpecificityHost-Parasite Interactions03 medical and health sciencesSpecies SpecificityOxyuroideaPhylogeneticsGeneticsAnimalsColonizationCladePhylogenyEcology Evolution Behavior and Systematicsgeographygeography.geographical_feature_categoryHost (biology)Bayes TheoremBiological EvolutionPhylogeography030104 developmental biologyTaxonSpainEvolutionary biologyArchipelagoMolecular Ecology
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Hybridization, ecogeographical displacement and the emergence of new lineages – A genotyping‐by‐sequencing and ecological niche and species distribut…

2021

Ecogeographical displacement of homoploid hybrid lineages from their parents is well documented and considered an important mechanism to achieve reproductive isolation. In this study, we investigated the origin of the flowering plant species Sempervivum tectorum in the Massif Central (France) through homoploid hybridization between lineages of the species from the Rhine Gorge area (Germany) and the Pyrenees (France). We used genotyping-by-sequencing genetic data as evidence for the hybrid origin of the Massif Central lineage, and WorldClim climatic data and soil pH and soil temperature data collected by us for ecological niche and species distribution modelling. We could show that the Massi…

0106 biological sciences0301 basic medicineReproductive IsolationClimate ChangeLineage (evolution)NicheAdaptation BiologicalParapatric speciationBiologyCrassulaceaeModels Biological010603 evolutionary biology01 natural sciences570 Life sciences03 medical and health sciencesEcosystemEcology Evolution Behavior and SystematicsEcological nichegeographyPloidiesgeography.geographical_feature_categoryMassifReproductive isolationEnvironmental niche modellingEuropePhylogeography030104 developmental biologyEvolutionary biologySympatric speciationHybridization Genetic570 BiowissenschaftenJournal of Evolutionary Biology
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