Search results for "PROTAX"

showing 2 items of 2 documents

A molecular-based identification resource for the arthropods of Finland

2022

Publisher Copyright: © 2021 The Authors. Molecular Ecology Resources published by John Wiley & Sons Ltd. To associate specimens identified by molecular characters to other biological knowledge, we need reference sequences annotated by Linnaean taxonomy. In this study, we (1) report the creation of a comprehensive reference library of DNA barcodes for the arthropods of an entire country (Finland), (2) publish this library, and (3) deliver a new identification tool for insects and spiders, as based on this resource. The reference library contains mtDNA COI barcodes for 11,275 (43%) of 26,437 arthropod species known from Finland, including 10,811 (45%) of 23,956 insect species. To quantify the…

0106 biological sciencesResource (biology)DNA barcodesspecies identificationBiodiversityreference libraryarthropodsBiologyBarcodeProbabilistic taxonomic assignment010603 evolutionary biology01 natural scienceslaw.inventionCoiCOI03 medical and health sciencessymbols.namesakeProtaxlawprobabilistic taxonomic assignmentniveljalkaisetGeneticsAnimalsDNA Barcoding TaxonomicSpecies identificationArthropodsSpecies identificationFinlandEcology Evolution Behavior and SystematicsGene Library030304 developmental biology0303 health sciencesDNA-analyysiPROTAXsystematiikka (biologia)Linnaean taxonomyReference libraryBiodiversityGeographyEvolutionary biologyDna barcodes1181 Ecology evolutionary biologysymbolsidentificationlajinmääritysIdentification (biology)Biotechnology
researchProduct

Functional Metabolic Diversity of Bacterioplankton in Maritime Antarctic Lakes

2021

A summer survey was conducted on the bacterioplankton communities of seven lakes from Byers Peninsula (Maritime Antarctica), differing in trophic and morphological characteristics. Predictions of the metabolic capabilities of these communities were performed with FAPROTAX using 16S rRNA sequencing data. The versatility for metabolizing carbon sources was also assessed in three of the lakes using Biolog Ecoplates. Relevant differences among lakes and within lake depths were observed. A total of 23 metabolic activities associated to the main biogeochemical cycles were foreseen, namely, carbon (11), nitrogen (4), sulfur (5), iron (2), and hydrogen (1). The aerobic metabolisms dominated, althou…

Microbiology (medical)maritime Antarctic lakesBiogeochemical cyclemicrobial co-occurrence networkQH301-705.5FAPROTAXGrowing seasonMicrobiologyArticleNutrientVirologyparasitic diseasesOrganic matterBiology (General)metabolism inferenceByers PeninsulaTrophic levelchemistry.chemical_classificationBiomass (ecology)Biolog EcoplatesEcologyBacterioplanktonbiogeochemical cyclesfunctional diversitychemistryEnvironmental sciencenext-generation sequencingEutrophicationMicroorganisms
researchProduct