Search results for "Phylogenetics"
showing 10 items of 777 documents
Molecular phylogenetics and historical biogeography of the west-palearctic common toads (Bufo bufo species complex)
2012
In most pan-Eurasiatic species complexes, two phenomena have been traditionally considered key processes of their cladogenesis and biogeography. First, it is hypothesized that the origin and development of the Central Asian Deserts generated a biogeographic barrier that fragmented past continuous distributions in Eastern and Western domains. Second, Pleistocene glaciations have been proposed as the main process driving the regional diversification within each of these domains. The European common toad and its closest relatives provide an interesting opportunity to examine the relative contributions of these paleogeographic and paleoclimatic events to the phylogeny and biogeography of a wide…
Phylogeny and morphology of Anthracoidea pamiroalaica sp. nov. infecting the endemic sedge Carex koshewnikowii in the Pamir Alai Mts (Tajikistan)
2015
A novel Anthracoidea species, A. pamiroalaica on the endemic sedge Carex koshewnikowii, is described and illustrated from the Pamir Alai Mts in Tajikistan (Central Asia). The new species is phenotypically nearly identical with Anthracoidea sempervirentis, but clearly divergent genetically. Phylogenetic analyses based on LSU sequences showed affinity of Anthracoidea pamiroalaica to A. baldensis, A. rupestris, A. capillaris, and A. vankyi infecting host sedges in different Carex sections (Baldenses, Rupestres, Chlorostachyae, and Phaestoglochin, respectively), but not to A. misandrae, and A. sempervirentis, two sequenced species parasitic on host species from the section Aulocystis. This phyl…
Gisekia(Gisekiaceae): Phylogenetic relationships, biogeography, and ecophysiology of a poorly known C4lineage in the Caryophyllales
2014
• Premise of the study: Gisekiaceae are a monogeneric family of the core Caryophyllales distributed in arid regions of Africa and Asia. The only widespread species of the genus, Gisekia pharnaceoides, performs C4 photosynthesis based on CO2 compensation point measurements. This study investigates the C4 syndrome and its evolution in Gisekia. The infrageneric relationships, distribution and bioclimatic preferences of Gisekia are also investigated.• Methods: Leaf gas exchange characteristics, activity of Rubisco and major C4 cycle enzymes, and ultrastructural characteristics of mesophyll and bundle sheath cells are studied for Gisekia pharnaceoides. δ13C values and leaf anatomy are analyzed f…
New insights into the taxonomy and phylogeny of social voles inferred from mitochondrial cytochrome b sequences
2012
We sequenced the entire cytochrome b gene in Microtus paradoxus from Turkmenistan and Microtus socialis from Crimea and Kalmykia. Phylogenetic relationships among social voles were reconstructed by the inclusion into analyses of a further 23 published haplotypes belonging to six species. The two probabilistic methods which were used in phylogenetic analyses, the Bayesian inference and Maximum Likelihood, yielded very similar results. Both trees showed two highly divergent lineages which were further subdivided into seven species. The socialis lineage encompassed four species (M. socialis, M. irani, M. anatolicus, and M. paradoxus), and the remaining three species clustered into the guenther…
Molecular Evolution of Defense Pathways in Sponges: Self–Self-recognition and Fight against the Nonself
2016
This article provides an overview of the immune system in poriferans at a tissue, cellular, and molecular level. Despite their simple organization, sponges have developed molecular mechanisms to recognize and resist foreign organisms. They are able to distinguish among food organisms, pathogens, and sponge-associated organisms. Although they lack specialized immune cells, sponges display molecular precursors, which are similar to molecular mediators involved in innate and adaptive immune systems, present in more evolutionarily advanced taxa, as outlined in succeeding articles in the Phylogeny section.
Skull osteology ofParvilacerta parva, a small-sized lacertid lizard from Asia Minor
2002
The skull of the poorly known Asia Minor lacertid lizard Parvilacerta parva is described. In comparison to other palaearctic lacertids, Parvilacerta parva displays several peculiar traits such as a large braincase, a short parietal table, closed post-temporal openings, reduced ossification, or a large lacrimal. Many features are related to the small size of Parvilacerta parva and are of apparently heterochronic nature, as they can also be found in certain ontogenetic stages of other lacertid species. Small size and heterochrony even seem to be factors involved in the less-developed sexual dimorphism of Parvilacerta parva. The described morphology is interpreted to be related to a life histo…
Rapid differentiation between livestock-associated and livestock-independent Staphylococcus aureus CC398 clades.
2013
Staphylococcus aureus clonal complex 398 (CC398) isolates cluster into two distinct phylogenetic clades based on single-nucleotide polymorphisms (SNPs) revealing a basal human clade and a more derived livestock clade. The scn and tet(M) genes are strongly associated with the human and the livestock clade, respectively, due to loss and acquisition of mobile genetic elements. We present canonical single-nucleotide polymorphism (canSNP) assays that differentiate the two major host-associated S. aureus CC398 clades and a duplex PCR assay for detection of scn and tet (M). The canSNP assays correctly placed 88 S. aureus CC398 isolates from a reference collection into the human and livestock clade…
An 18S rDNA-Based Molecular Phylogeny of Aphidiinae (Hymenoptera: Braconidae)
2000
We have obtained a molecular phylogeny of the subfamily Aphidiinae (Hymenoptera: Braconidae) by sequencing the 18S rDNA in 37 aphidiine taxa. Approximately 1857 nucleotides were sequenced in each species. Evolutionary relationships were established by comparing the results of maximum-parsimony, maximum-likelihood, and distance analyses. The most variable region of this gene, V4 (approx 403 nucleotides), was employed to establish the basality of the tribe Ephedrini within this subfamily. All phylogenetic reconstructions yielded trees with very similar topologies that confirmed the existence of two of the four traditionally accepted tribes, Ephedrini and Praini, but questioned the existence o…
Phylogeny of Sesuvioideae (Aizoaceae) – Biogeography, leaf anatomy and the evolution of C4 photosynthesis
2015
Abstract Sesuvioideae (Aizoaceae) form a small subfamily of drought-tolerant plants exhibiting leaf succulence, halophytic ecology, and the C4 photosynthetic pathway. Sesuvioideae are sister to the species-rich subfamilies Ruschioideae, Mesembryanthemoideae and Aizooideae that contain many CAM lineages. This close relationship of CAM and C4 taxa identifies the Sesuvioideae as an important clade to address hypotheses of photosynthetic pathway evolution. This study presents a molecular phylogeny of Sesuvioideae based on five markers (atpB-rbcL spacer, rps16 intron, trnL-trnF spacer, petB-petD spacer, ITS) and 51 accessions representing all genera and 37 species. We determined carbon isotope d…
Systematic position of Dinidoridae within the superfamily Pentatomoidea (Hemiptera: Heteroptera) revealed by the Bayesian phylogenetic analysis of th…
2012
Mitochondrial 12S and 16S rDNA sequences of five species of Dinidoridae Stål, 1868, a largely Paleotropical family, and 16 other shield bugs (Pentatomoidea) were studied. This was the first molecular examination of the systematic position of this family within the superfamily Pentatomoidea using more than a single dinidorid species. Phylogenetic trees obtained from the Bayesian inference of 12S and 16S sequences of these mitochondrial DNA, identified Dinidoridae as the monophylum and a sister group to the Tessaratomidae. Moreover, results of the study suggested a close molecular affinity of the genus Eumenotes to representatives of the subfamily Dinidorinae, which contradicts all previous m…