Search results for "Pike"

showing 10 items of 130 documents

Large-scale analysis of SARS-CoV-2 spike-glycoprotein mutants demonstrates the need for continuous screening of virus isolates

2021

Due to the widespread of the COVID-19 pandemic, the SARS-CoV-2 genome is evolving in diverse human populations. Several studies already reported different strains and an increase in the mutation rate. Particularly, mutations in SARS-CoV-2 spike-glycoprotein are of great interest as it mediates infection in human and recently approved mRNA vaccines are designed to induce immune responses against it. We analyzed 1,036,030 SARS-CoV-2 genome assemblies and 30,806 NGS datasets from GISAID and European Nucleotide Archive (ENA) focusing on non-synonymous mutations in the spike protein. Only around 2.5% of the samples contained the wild-type spike protein with no variation from the reference. Among…

RNA virusesMutation rateCoronavirusesEpidemiologyMolecular biologyT-LymphocytesMutantGene Identification and Analysismedicine.disease_causeGenomeWhite Blood CellsDatabase and Informatics MethodsSequencing techniquesMutation RateAnimal CellsDNA sequencingPathology and laboratory medicineGeneticsMutationMultidisciplinaryT CellsMicrobial MutationQRHigh-Throughput Nucleotide SequencingGenomicsMedical microbiologyVirusesSpike Glycoprotein CoronavirusMedicineSARS CoV 2PathogensCellular TypesTranscriptome AnalysisSequence AnalysisResearch ArticleNext-Generation SequencingSARS coronavirusBioinformaticsImmune CellsScienceImmunologyProtein domainSequence alignmentGenomicsGenome ViralBiologyMicrobiologyAntibodiesDNA sequencingProtein DomainsGeneticsmedicineHumansMutation DetectionPandemicsMedicine and health sciencesBlood CellsBiology and life sciencesSARS-CoV-2OrganismsViral pathogensComputational BiologyCOVID-19Cell BiologyGenome AnalysisMicrobial pathogensResearch and analysis methodsMolecular biology techniquesMutationSequence AlignmentPLOS ONE
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Chemical separation and MC-ICPMS analysis of U, Th, Pa and Ra isotope ratios of carbonates

2018

Diagenetic alteration of fossil reef corals may have severe effects on the reliability of 230Th/U-ages. The widely applied criteria introduced to test for the reliability of coral 230Th/U-ages are often not sufficient to identify all altered ages. The combination of 230Th/U- with 231Pa/U-dating has been suggested as a promising method to identify altered ages. Furthermore, 226Ra/230Th ratios can provide information about the diagenetic history during the last 10 000 years. Here we present a method to chemically separate U, Th, Pa and Ra from the same aliquot of a carbonate sample. The isotope ratios of our mixed U–Th–Pa–Ra spike are calibrated using a secular equilibrium material treated in…

Reproducibility010504 meteorology & atmospheric sciencesIsotopeMineralogySecular equilibrium010502 geochemistry & geophysics01 natural sciencesAnalytical ChemistryChemical separationSample size determinationCalibrationEnvironmental scienceSpike (software development)SpectroscopyRadioactive decay0105 earth and related environmental sciencesJournal of Analytical Atomic Spectrometry
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Different sensitivities of whitefish (Coregonus lavaretus) and northern pike (Esox lucius) eleutheroembryos to photoinduced toxicity of polycyclic ar…

2011

The photoinduced toxicity of two polycyclic aromatic hydrocarbons (PAHs), retene (RET) and pyrene (PYR), to the eleutheroembryos of whitefish and northern pike was studied. Fish were exposed to three concentrations of RET and PYR, and irradiated with ultraviolet radiation (UVR) or visible light for 3 h on two consecutive days. UVR covered the absorption maxima of RET and PYR at UVB and UVA, the daily UVR doses were 30 and 28 kJ m−2, respectively. After 72 h, mortality and behavioral abnormalities were observed. Survivors were analyzed for the proteins of CYP1A, CYP3A, Hsp70, and the activity of glutathione reductase (GR). While neither PAHs nor UVR on their own were lethal, simultaneous exp…

Reteneendocrine system diseasesintegumentary systemPolymers and Plasticsbiologyfood.dishfungiOrganic ChemistryGlutathione reductasebiology.organism_classificationchemistry.chemical_compoundfoodchemistryCoregonus lavaretusEnvironmental chemistryToxicityMaterials ChemistryPyrenePhototoxicitycomputerEsoxta119Pikecomputer.programming_languagePolycyclic Aromatic Compounds.
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Lectotypification of the spikemosses Selaginella denticulata and S. ornithopodioides (Selaginellaceae, Lycopsida)

2015

The typification of the names Selaginella denticulata (L.) Spring (≡ Lycopodium denticulatum L.) and S . ornithopodioides (L.) Spring (≡ L . ornithopodioides L.) (Selaginellaceae) is discussed. A specimen at LINN is designated as the lectotype of S . denticulata , and a specimen at BM is designated as the second-step lectotype of the name S . ornithopodioides .

SelaginellaceaeLycopodiumbiologyBotanyTypificationPlant Sciencebiology.organism_classificationEudicotsNomenclatureEcology Evolution Behavior and SystematicsSpikemossesSelaginella denticulataPhytotaxa
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Differing kinetics of anti-spike protein IgGs and neutralizing antibodies against SARS-CoV-2 after Comirnaty (BNT162b2) immunization

2022

Abstract Aims Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infection has had a serious worldwide impact on human health. On December 2020, an immunization campaign with a COVID-19 mRNA vaccine (Comirnaty-BNT162b2 Pfizer-BioNTech) was started in Italy, first targeting healthcare workers (HCWs). This study aims to investigate the antibodies that are response against SARS-CoV-2 vaccine. Methods and Results The kinetics and the persistence of both anti-S1/S2 IgGs and neutralizing antibodies (Nt-Abs) were investigated in 76 HCWs through a 4-month follow-up with multiple testing points starting at the first dose. Temporal analysis of SARS-CoV-2 Abs titre kinetics showed three diff…

Settore MED/07 - Microbiologia E Microbiologia ClinicaVaccines SyntheticCOVID-19 VaccinesSARS-CoV-2VaccinationCOVID-19General Medicineneutralizing antibodies.Settore MED/42 - Igiene Generale E ApplicataAntibodies ViralAntibodies NeutralizingApplied Microbiology and BiotechnologyKineticsItalyhealthcare workerImmunoglobulin GSpike Glycoprotein CoronavirusHumansmRNA Vaccineskinetics of antibodieBNT162 VaccineBiotechnologyJournal of Applied Microbiology
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Suitability of two rapid lateral flow immunochromatographic assays for predicting SARS‐CoV‐2 neutralizing activity of sera

2020

Purpose: Assessment of commercial SARS-CoV-2 immunoassays for their capacity to provide reliable information on sera neutralizing activity is an emerging need. We evaluated the performance of two commercially-available lateral flow immunochromatographic assays (LFIC) (Wondfo SARS-CoV-2 Antibody test and the INNOVITA 2019-nCoV Ab test) in comparison with a SARS-CoV-2 neutralization pseudotyped assay for COVID-19 diagnosis in hospitalized patients, and investigate whether the intensity of the test band in LFIC associates with neutralizing antibody (NtAb) titers. Patients and Methods: Ninety sera were included from 51 patients with moderate to severe COVID-19. A green fluorescent protein (GFP)…

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)Green Fluorescent ProteinsAntibodies ViralNeutralizing antibodiesNeutralizationSARS‐CoV‐2Green fluorescent protein03 medical and health sciencesCOVID-19 Testing0302 clinical medicineCOVID‐19VirologyLateral flow 16 immunochromatographic assaysHumansMedicineImmunochromatographic Assays030212 general & internal medicineNeutralizing antibodyResearch ArticlesImmunoassaybiologybusiness.industrySARS-CoV-2COVID-19biology.organism_classificationAntibodies NeutralizingVirologyTiterInfectious DiseasesImmunoglobulin MVesicular stomatitis virusImmunoglobulin GSpike Glycoprotein Coronavirusbiology.proteinlateral flow immunochromatographic assays030211 gastroenterology & hepatologyLteral flow immunochromatographic assaysAntibodybusinessResearch Article
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Effects of low frequency electric fields on synaptic integration in hippocampal CA1 pyramidal neurons: implications for power line emissions

2014

The possible cognitive effects of low frequency external electric fields, such as those generated by power lines, are poorly understood. Their functional consequences for mechanisms at the single neuron level are very difficult to study and identify experimentally, especially in vivo. The major open problem is that experimental investigations on humans have given inconsistent or contradictory results, making it difficult to estimate the possible effects of external low frequency electric fields on cognitive functions. Here we investigate this issue with a realistic model of hippocampal CA1 pyramidal neurons. The model suggests how and why external electric fields, with environmentally obser…

Signal processingElementary cognitive taskexternal fieldhippocampal CA1 neuronComputer sciencespikes synchronizationpowerlines effectsCognitionHippocampal formationLow frequencysimulationlcsh:RC321-571Cellular and Molecular Neurosciencemedicine.anatomical_structureElectric power transmissionElectric fieldmedicinerealistic modelOriginal Research ArticleNeuronNeurosciencelcsh:Neurosciences. Biological psychiatry. NeuropsychiatryNeuroscienceExtracellular fieldFrontiers in Cellular Neuroscience
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Adaptive-threshold neural spike detection by noise-envelope tracking

2007

A new method for adaptive threshold setting is implemented and used in two threshold-based spike detectors: simple threshold and nonlinear energy operator. Detection quality assessment is performed using both a set of artificially generated signals and a real neural recording. Receiver operating curves are obtained and results show that, compared to fix threshold, adaptive threshold setting yields performance improvement.

Signal processingNoise (signal processing)Computer scienceNoise reductionDetectorElectronic engineeringSpike (software development)Detection theoryElectrical and Electronic EngineeringNeurophysiologyAlgorithmSpike potentialElectronics Letters
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Information – theoretic characterization of concurrent activity of neural spike trains

2021

The analysis of massively parallel spike train recordings facilitates investigation of communications and synchronization in neural networks. In this work we develop and evaluate a measure of concurrent neural activity, which is based on intrinsic firing properties of the recorded neural units. An overall single neuron activity is unfolded in time and decomposed into working and non-firing state, providing a coarse, binary representation of the neurons functional state. We propose a modified measure of mutual information to reflect the degree of simultaneous activation and concurrency in neural firing patterns. The measure is shown to be sensitive to both correlations and anti-correlations,…

Signal processingQuantitative Biology::Neurons and CognitionArtificial neural networkComputer sciencebusiness.industrySpike trainFiring patterns020206 networking & telecommunicationsPattern recognition02 engineering and technologyMeasure (mathematics)Concurrent activityMutual informationNeural activitymedicine.anatomical_structure0202 electrical engineering electronic engineering information engineeringmedicineSpike trains020201 artificial intelligence & image processingSpike (software development)NeuronArtificial intelligencebusinessNeural synchrony2020 28th European Signal Processing Conference (EUSIPCO)
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Hardware-accelerated spike train generation for neuromorphic image and video processing

2014

Recent studies concerning Spiking Neural Networks show that they are a powerful tool for multiple applications as pattern recognition, image tracking, and detection tasks. The basic functional properties of SNN reside in the use of spike information encoding as the neurons are specifically designed and trained using spike trains. We present a novel and efficient frequency encoding algorithm with Gabor-like receptive fields using probabilistic methods and targeted to FPGA for online pro-cessing. The proposed encoding is versatile, modular and, when applied to images, it is able to perform simple image transforms as edge detection, spot detection or removal, and Gabor-like filtering without a…

Spiking neural networkComputer sciencebusiness.industrySpike trainImage processingVideo processingEdge detectionNeuromorphic engineeringEncoding (memory)Computer visionSpike (software development)Artificial intelligencebusinessComputer hardware2014 IX Southern Conference on Programmable Logic (SPL)
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