Search results for "Quantitative Biology::Subcellular Processes"
showing 10 items of 97 documents
Hydrodynamic synchronization of pairs of puller type magnetotactic bacteria in a high frequency rotating magnetic field.
2019
Ensembles of magnetotactic bacteria are known to interact hydrodynamically and form swarms under the influence of external magnetic fields. We describe the synchronization of puller type magnetotactic bacteria in a rotating magnetic field by representing the bacteria as hydrodynamic force dipoles. Numerical simulations show that at moderate values of the hydrodynamic interaction parameter large ensembles of asynchronously rotating bacteria randomly eject propagating doublets of synchronized bacteria. We quantitatively analyze the dynamics of the doublets and show that an important role in the formation of these propagating structures is played by the parameters characterizing the possible t…
Dynamics of a flexible ferromagnetic filament in a rotating magnetic field.
2017
Flexible magnetic filaments have garnered considerable attention as prospective materials for the creation of different microdevices. We describe a theoretical model of a ferromagnetic filament and derive its equations of motion by variational techniques. The numerical algorithm used to solve the filament dynamics in magnetic fields of different configurations is described. It is found that in a rotating field the filament transitions between synchronous and asynchronous regimes with respect to the rotating field, similarly to a rigid magnetic dipole. The mean angular velocity of the filament is well described by a relation valid for a rigid magnetic dipole with quantitative differences att…
3D motion of flexible ferromagnetic filaments under a rotating magnetic field.
2020
Ferromagnetic filaments in a rotating magnetic field are studied both numerically and experimentally. The filaments are made from micron-sized ferromagnetic particles linked with DNA strands. It is found that at low frequencies of the rotating field a filament rotates synchronously with the field and beyond a critical frequency it undergoes a transition to a three dimensional regime. In this regime the tips of the filament rotate synchronously with the field on circular trajectories in the plane parallel to the plane of the rotating field. The characteristics of this motion found numerically match the experimental data and allow us to obtain the physical properties of such filaments. We als…
Diffusion in active magnetic colloids
2013
Abstract Properties of active colloids of circle swimmers are reviewed. As a particular example of active magnetic colloids the magnetotactic bacteria under the action of a rotating magnetic field is considered. The relation for a diffusion coefficient due to the random switching of the direction of rotation of their rotary motors is derived on the basis of the master equation. The obtained relation is confirmed by the direct numerical simulation of random trajectory of a magnetotactic bacterium under the action of the Poisson type internal noise due to the random switching of rotary motors. The results obtained are in qualitative and quantitative agreement with the available experimental r…
Analysis of Torque Developed in Axial Flux, Single-Phase Brushless DC Motor With Salient-Pole Stator
2004
An analysis of the torque developed by a single-phase disc brushless permanent magnet motor with salient-pole stator is presented. The machine represents a new family of brushless disc motors with the starting torque issue appearing to be most challenging. To produce a starting torque, the permanent magnets on one of the rotor discs are distributed nonuniformly. However, this significantly distorts a shape of the cogging torque versus rotational angle characteristic which, in turn, affects a waveform of the overall torque. A three-dimensional (3-D) finite-element model is used for the purpose of determining of angular variations of the torque developed by the motor. To find how the torque v…
Rocking bidirectional lasers
2011
Abstract We study the emission properties of a class A bidirectional laser under the action of an amplitude modulated injected signal, i.e. a rocked bidirectional laser. We derive two coupled autonomous amplitude equations valid close to the emission threshold and study their solutions. The most relevant result is that while in the absence of rocking the laser can only emit in either of the two unidirectional solutions, under suitable rocking conditions cw bidirectional emission appears and, moreover, it coexist bistably with unidirectional emission.
An Influence of Permanent Magnet Shape on the Torque Ripple of Disc-Type Brushless DC Motors
2006
An analysis of the torque developed by two types of the disc-type permanent magnet (PM), brushless DC motors: slotted torus motor and motor with stator salient poles is presented. The calculations were performed using three-dimensional finite element method (FEM). Two shapes of PMs are analyzed: trapezoidal and rectangular. The results show that application of rectangular shaped PMs provides significant reduction of the torque ripple in both considered motors.
Crumpling of a stiff tethered membrane.
2003
first-principles numerical simulation model for crumpling of a stiff tethered membrane is introduced. In our model membranes, wrinkles, ridge formation, ridge collapse, as well as the initiation of stiffness divergence, are observed. The ratio of the amplitude and wave length of the wrinkles, and the scaling exponent of the stiffness divergence, are consistent with both theory and experiment. We observe that close to the stiffness divergence there appears a crossover beyond which the elastic behavior of a tethered membrane becomes similar to that of dry granular media. This suggests that ridge formation in membranes and force-chain network formation in granular packings are different manife…
On ripples and rafts: Curvature induced nanoscale structures in lipid membranes
2014
We develop an elastic theory that predicts the spontaneous formation of nanoscale structures in lipid bilayers which locally phase separate between two phases with different spontaneous monolayer curvature. The theory rationalizes in a unified manner the observation of a variety of nanoscale structures in lipid membranes: Rippled states in one-component membranes, lipid rafts in multicomponent membranes. Furthermore, we report on recent observations of rippled states and rafts in simulations of a simple coarse-grained model for lipid bilayers, which are compatible with experimental observations and with our elastic model.
How neutron scattering experiments can target the structure and dynamics of milk proteins?
2016
International audience; The powerful of neutron scattering techniques to characterize structure and dynamics of milk proteins is illustrated. Small angle neutron scattering and reflectivity are used to determine the structure and the interactions between milk proteins in solution, during gelation processes, or the protein structure at different interfaces. Experiments performed by inelastic and quasielastic neutron scattering allow one to observe the dynamics of water and proteins showing the major role of hydration on the dynamics of milk proteins.