Search results for "RATES"

showing 10 items of 1636 documents

Efficient estimation of generalized linear latent variable models.

2019

Generalized linear latent variable models (GLLVM) are popular tools for modeling multivariate, correlated responses. Such data are often encountered, for instance, in ecological studies, where presence-absences, counts, or biomass of interacting species are collected from a set of sites. Until very recently, the main challenge in fitting GLLVMs has been the lack of computationally efficient estimation methods. For likelihood based estimation, several closed form approximations for the marginal likelihood of GLLVMs have been proposed, but their efficient implementations have been lacking in the literature. To fill this gap, we show in this paper how to obtain computationally convenient estim…

0106 biological sciencesMultivariate statisticsMultivariate analysisComputer scienceBinomials01 natural sciencesPolynomials010104 statistics & probabilityAmoebastilastolliset mallitestimointiProtozoansLikelihood FunctionsMultidisciplinaryApproximation MethodsStatistical ModelsSimulation and ModelingApplied MathematicsStatisticsQLinear modelREukaryotaLaplace's methodData Interpretation StatisticalPhysical SciencesVertebratesMedicineAlgorithmAlgorithmsResearch ArticleOptimizationScienceLatent variableResearch and Analysis Methods010603 evolutionary biologygeneralized linear latent variable modelsSet (abstract data type)BirdsAnimalsComputer Simulation0101 mathematicsta112OrganismsBiology and Life SciencesStatistical modelMarginal likelihoodAlgebraAmniotesMultivariate AnalysisLinear ModelsMathematicsSoftwarePLoS ONE
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Carbohydrate dynamics in particle-size fractions of sandy spodosols following forest conversion to maize cropping

2006

International audience; In southwest France, much of the forested land on sandy spodosols has been converted to continuous maize cropping in the last few decades. To evaluate the impacts of this change on soil organic matter properties, we compared total organic C and neutral and amino sugars content in whole soil and particle size separates of two forested, and five related sites that had been either clear-cut for 12 and 18 mo, or cultivated to maize for 4-22yr. Soil carbohydrates accounted for 4-7% of the total organic C across all sites. Soil organic C contents of clear-cut and cultivated sites were only 57-79% of the average value measured in forested sites. Accordingly, carbohydrate co…

0106 biological sciencesPINE FORESTAmino sugarChronosequenceSoil ScienceMuramic acidSilt[SDV.SA.SDS]Life Sciences [q-bio]/Agricultural sciences/Soil study01 natural sciencesMicrobiologyPARTICLE SIZE SEPARATESUCRESchemistry.chemical_compoundPoaceaeFRACTIONNEMENT GRANULOMETRIQUE2. Zero hungerchemistry.chemical_classificationPODZOSOLBIOCHIMIESoil organic matterCARBOHYDRATESPIN MARITIME04 agricultural and veterinary sciences15. Life on landPodzolchemistryAgronomyMAIZE CROPPINGSoil water040103 agronomy & agriculture0401 agriculture forestry and fisheries010606 plant biology & botany
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Guano-Derived Nutrient Subsidies Drive Food Web Structure in Coastal Ponds.

2016

A stable isotope study was carried out seasonally in three coastal ponds (Marinello system, Italy) affected by different gull guano input to investigate the effect of nutrient subsidies on food web structure and dynamics. A marked 15N enrichment occurred in the pond receiving the highest guano input, indicating that gull-derived fertilization (guanotrophication) had a strong localised effect and flowed across trophic levels. The main food web response to guanotrophication was an overall erosion of the benthic pathway in favour of the planktonic. Subsidized primary consumers, mostly deposit feeders, switched their diet according to organic matter source availability. Secondary consumers and,…

0106 biological sciencesPhysiologyMarine and Aquatic Scienceslcsh:Medicine01 natural sciencesCharadriiformesFood chainIsotopescoastal pondsFood Web StructureMedicine and Health Scienceslcsh:ScienceTrophic levelMultidisciplinaryEcologyfood webEcologyConsumerFishesFood webSeabirdsGullsCommunity EcologyItalyBenthic zoneVertebratesGuanoSeasonsResearch ArticleFood Chainguano; food web; benthos; mixing model; isotope; coastal pondsbentho010603 evolutionary biologyBirdsAnimalsEcosystemguanoPondsisotopeEcosystemNutrition010604 marine biology & hydrobiologyEcology and Environmental Sciencesfungilcsh:RFood ConsumptionOrganismsDetritivoreBiology and Life SciencesNutrientsBodies of WaterModels Theoreticalmixing modelInvertebratesDietFisheryFoodEarth SciencesEnvironmental sciencelcsh:QPhysiological ProcessesPLoS ONE
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Underwater high frequency noise: Biological responses in sea urchin Arbacia lixula (Linnaeus, 1758)

2020

Marine life is extremely sensitive to the effects of environmental noise due to its reliance on underwater sounds for basic life functions, such as searching for food and mating. However, the effects on invertebrate species are not yet fully understood. The aim of this study was to determine the biochemical responses of Arbacia lixula exposed to high-frequency noise. Protein concentration, enzyme activity (esterase, phosphatase and peroxidase) and cytotoxicity in coelomic fluid were compared in individuals exposed for three hours to consecutive linear sweeps of 100 to 200 kHz lasting 1 s, and control specimens. Sound pressure levels ranged between 145 and 160 dB re 1μPa. Coelomic fluid was …

0106 biological sciencesPhysiologyPhosphataseZoology01 natural sciencesBiochemistryEsteraseHemolysis03 medical and health sciencesbiology.animalAnimalsHomeostasisHSP70 Heat-Shock ProteinsMatingSettore BIO/06 - Anatomia Comparata E CitologiaMolecular BiologySea urchinArbacia lixulaHSP70030304 developmental biologyInvertebrateCell ProliferationPeroxidaseArbacia0303 health sciencesbiologyEchinoderm010604 marine biology & hydrobiologyEsterasesMarine invertebrateMarine invertebratesbiology.organism_classificationAlkaline PhosphataseAcoustic stimuluEnzyme assayCoelomomycesBody Fluidsbiology.proteinMetabolomePhysiological stress.Noise
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Seasonal dynamics of photosynthesis and total carbon gain in bearing and nonbearing pistachio (Pistacia vera L.) shoots

2018

Seasonal changes in leaf gas exchange, assimilation response to light and leaf area were monitored in bearing and nonbearing pistachio shoots. Shoot bearing status did not directly affect leaf photosynthetic rate. However, photosynthetic light-response curves strongly varied during the season demonstrating the dominant effect of the tree’s seasonal phenology on assimilation. Early in the season low photosynthetic rates were associated with high rates of dark respiration indicating limited photosynthesis in the young leaves. As leaves matured, dark respiration decreased and assimilation reached maximum values. Photosynthetic efficiency was strongly reduced late in the season due to leaf ag…

0106 biological sciencesPhysiologyPlant SciencePhotosynthetic efficiencyPhotosynthesis01 natural sciencesBotanyRespirationmedicinePistaciabiologyPhenologyfungifood and beveragesPlant physiology04 agricultural and veterinary sciencesSeasonalitybiology.organism_classificationmedicine.diseaseSettore AGR/03 - Arboricoltura Generale E Coltivazioni ArboreeHorticultureShoot040103 agronomy & agriculture0401 agriculture forestry and fisheriesalternate bearing bud drop carbohydrates light-response curve photosynthetic photon flux density010606 plant biology & botany
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Risk of predation makes foragers less choosy about their food.

2017

18 pages; International audience; Animals foraging in the wild have to balance speed of decision making and accuracy of assessment of a food item's quality. If resource quality is important for maximizing fitness, then the duration of decision making may be in conflict with other crucial and time consuming tasks, such as anti-predator behaviours or competition monitoring. Individuals facing the risk of predation and/or competition should adjust the duration of decision making and, as a consequence, their level of choosiness for resources. When exposed to predation, the forager could either maintain its level of choosiness for food items but accept a reduction in the amount of food items con…

0106 biological sciencesPhysiologylcsh:MedicinePredationSocial SciencesKaplan-Meier EstimateChoice Behavior01 natural sciencesPredationCognitionMathematical and Statistical TechniquesBeetlesMedicine and Health Sciences[ SDV.EE.IEO ] Life Sciences [q-bio]/Ecology environment/SymbiosisPsychologyForagingDecision-makinglcsh:Sciencemedia_common2. Zero hungerMultidisciplinaryEcologyAnimal BehaviorEcology05 social sciencesEukaryotaPlantsTrophic InteractionsInsectsCommunity EcologyPhysical SciencesSeedsStatistics (Mathematics)Research ArticleRiskOpportunity costArthropodaMovementmedia_common.quotation_subjectDecision MakingForagingBiologyResearch and Analysis Methods010603 evolutionary biologyIntraspecific competitionCompetition (biology)Food PreferencesAnimals0501 psychology and cognitive sciencesQuality (business)050102 behavioral science & comparative psychologyStatistical MethodsBehavior[ SDE.BE ] Environmental Sciences/Biodiversity and Ecologylcsh:REcology and Environmental SciencesCognitive PsychologyFood ConsumptionOrganismsBiology and Life SciencesInterspecific competitionInvertebratesFoodPredatory BehaviorCognitive Sciencelcsh:QWeeds[SDE.BE]Environmental Sciences/Biodiversity and EcologyPhysiological ProcessesZoologyMathematicsNeuroscienceGeneralized Linear ModelDemography[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosis
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Proposed Environmental Risk Management Elements in a Carpathian Valley Basin, within the Roşia Montană European Historical Mining Area

2021

Non-ferrous metals mining activities have long accompanied people, and began in the study area of South East Europe over 2000 years ago. The environment quality is significantly affected by both historic mining activities and contemporary impacts. All these problems, inducing synergic negative effects on local organism communities, have created a chronic state of pollution. The Corna Valley has one of the oldest historical human impacts in Romania due to the influence of mining. Fish and benthic macroinvertebrates have exhibited significant responses to long term mining effects on lotic systems. The analysis of macroinvertebrate communities, correlated with the lack of fish and some biotope…

0106 biological sciencesPollutionBiotopehuman impactlentic and lotic ecosystemsRiver ecosystemHealth Toxicology and Mutagenesismedia_common.quotation_subject010501 environmental sciencesStructural basinrisk management01 natural sciencesArticleRiversAnimalsHumansRisk management0105 earth and related environmental sciencesmedia_commonInvertebratefishhuman impact; lentic and lotic ecosystems; aquatic macroinvertebrates; fish; threats; risk management; Corna BasinCorna BasinthreatsMontanaRomaniabusiness.industry010604 marine biology & hydrobiologyEnvironmental resource managementRPublic Health Environmental and Occupational HealthInvertebratesaquatic macroinvertebratesEuropeGeographyBenthic zoneMedicineFish <Actinopterygii>businessWater Pollutants ChemicalEnvironmental MonitoringInternational Journal of Environmental Research and Public Health
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Are the effects of an invasive crayfish on lake littoral macroinvertebrate communities consistent over time?

2016

Management of invasive species requires assessment of their effects on recipient ecosystems. However, impact assessment of invasive species commonly lacks a long-term perspective which can potentially lead to false conclusions. We examined the effects of the invasive signal crayfish (Pacifastacus leniusculus Dana) on the stony littoral macroinvertebrate communities of a large boreal lake and assessed the extent to which the patterns observed in previous short-term studies were stable over time. We used temporal macroinvertebrate data collected in five consecutive years from a site with a well-established crayfish population, a site with no crayfish and a site where crayfish had been recentl…

0106 biological sciencesPopulationmacroinvertebratesManagement Monitoring Policy and LawAquatic Science010603 evolutionary biology01 natural sciencesSignal crayfishPacifastacuslcsh:Aquaculture. Fisheries. Anglinginvasive speciesLittoral zoneeducationlakeNature and Landscape ConservationWater Science and TechnologyInvertebratelcsh:SH1-691education.field_of_studyEcologybiologycrayfishEcology010604 marine biology & hydrobiologymusculoskeletal neural and ocular physiologylittoral communitytulokaslajitbiology.organism_classificationCrayfishnervous systemBenthic zoneta1181Species richnessravutKnowledge and Management of Aquatic Ecosystems
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Identifying potential areas of expansion for the endangered brown bear (Ursus arctos) population in the cantabrian mountains (NW Spain)

2019

Many large carnivore populations are expanding into human-modified landscapes and the subsequent increase in coexistence between humans and large carnivores may intensify various types of conflicts. A proactive management approach is critical to successful mitigation of such conflicts. The Cantabrian Mountains in Northern Spain are home to the last remaining native brown bear (Ursus arctos) population of the Iberian Peninsula, which is also amongst the most severely threatened European populations, with an important core group residing in the province of Asturias. There are indications that this small population is demographically expanding its range. The identification of the potential are…

0106 biological sciencesRange (biology)Endangered speciesForests01 natural sciencesGeographical locationsPeninsulaGeoinformaticsUrsusCarnivoreConservation ScienceMammalseducation.field_of_studyMultidisciplinarygeography.geographical_feature_categoryEcologyGeographybiologyEcologyQREukaryotaTerrestrial EnvironmentsSpatial AutocorrelationCarnivoryTrophic InteractionsHabitatsEuropeCommunity EcologyHabitatVertebratesMedicineUrsidaeResearch ArticleComputer and Information SciencesSciencePopulationBears010603 evolutionary biologyEcosystemsPopulation MetricsAnimalsHumansEuropean Union14. Life underwatereducationEcosystemPopulation DensitygeographyPopulation Biology010604 marine biology & hydrobiologyEcology and Environmental SciencesOrganismsBiology and Life Sciences15. Life on landbiology.organism_classificationSpainAmniotesThreatened speciesEarth SciencesPeople and places
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Effects of geolocators on hatching success, return rates, breeding movements, and change in body mass in 16 species of Arctic-breeding shorebirds

2016

Background Geolocators are useful for tracking movements of long-distance migrants, but potential negative effects on birds have not been well studied. We tested for effects of geolocators (0.8–2.0 g total, representing 0.1–3.9 % of mean body mass) on 16 species of migratory shorebirds, including five species with 2–4 subspecies each for a total of 23 study taxa. Study species spanned a range of body sizes (26–1091 g) and eight genera, and were tagged at 23 breeding and eight nonbreeding sites. We compared breeding performance and return rates of birds with geolocators to control groups while controlling for potential confounding variables. Results We detected negative effects of tags for t…

0106 biological sciencesRange (biology)PopulationBreeding successBird migrationZoologyReturn ratesshorebirdsSubspeciesBiology010603 evolutionary biology01 natural sciences010605 ornithology[ SDV.EE ] Life Sciences [q-bio]/Ecology environmentNestFLightRgeolocator GeoLight FLightR migration annual schedules precisioneducationEcology Evolution Behavior and SystematicsMigration[SDV.EE]Life Sciences [q-bio]/Ecology environmenteducation.field_of_study[ SDE.BE ] Environmental Sciences/Biodiversity and Ecologygeolocation trackingGlobal location sensor (GLS)HatchingEcologyResearchWADERS CHARADRIIWadersGeologgerTracking methodsGeoLightResearch impactsannual schedulesgeolocationArcticAnimal ecologygeolocatorprecision[SDE.BE]Environmental Sciences/Biodiversity and Ecologybird migrationshorebird migrationMovement Ecology
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