Search results for "REGIONS"

showing 10 items of 1521 documents

Sea urchin HSF activity in vitro and in transgenic embryos.

1997

Evidence is provided for the presence at the physiological temperature of 20 degrees C of a heat shock transcriptor factor, HSF, in the nuclei of P.lividus embryos. This HSF is able to specifically bind in vitro the heat shock element, HSE, of the promoter of the hsp70 gene i.v., as suggested by DNA-protein binding reactions and DNAse I protection assays. Upon heat-shock, at the temperature of 31 degrees C, its ability to bind the HSE units becomes much higher. The HSF activated by heat-shock drives in vivo the transcription of the beta-galactosidase reporter gene in transgenic sea urchin gastrulae. An ATF-like transcription factor, widely described in other organisms but not at all in sea …

Embryo NonmammalianHot TemperatureSea UrchinTranscription FactorTransgeneRecombinant Fusion ProteinsMolecular Sequence DataBiophysicsTransfectionBiochemistryAnimals Genetically ModifiedTranscription (biology)Genes Reporterbiology.animalHeat shock proteinAnimalsHSP70 Heat-Shock ProteinsCell NucleuPromoter Regions GeneticMolecular BiologySea urchinTranscription factorHeat-Shock ProteinsCell NucleusHSP70 Heat-Shock ProteinReporter genebiologyBase SequenceAnimalTemperatureHeat-Shock ProteinPromoterCell BiologyGastrulabeta-GalactosidaseMolecular biologyCell biologyHsp70BiophysicSea UrchinsRecombinant Fusion ProteinTranscription FactorsBiochemical and biophysical research communications
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In silico characterization of the neural alpha tubulin gene promoter of the sea urchin embryo Paracentrotus lividus by phylogenetic footprinting

2011

During Paracentrotus lividus sea urchin embryo development one alpha and one beta tubulin genes are expressed specifically in the neural cells and they are early end output of the gene regulatory network that specifies the neural commitment. In this paper we have used a comparative genomics approach to identify con- served regulatory elements in the P. lividus neural alpha tubulin gene. To this purpose, we have first isolated a genomic clone containing the entire gene plus 4.5 Kb of 5 0 upstream sequences. Then, we have shown by gene transfer experiments that its non-coding region drives the spatio- temporal gene expression corresponding substantially to that of the endogenous gene. In addi…

Embryo NonmammalianMicroinjectionsSequence analysisGreen Fluorescent ProteinsDNA FootprintingNerve Tissue ProteinsSettore BIO/11 - Biologia MolecolarePhylogenetic footprintingParacentrotus lividusGenes ReporterTubulinGeneticsAnimalsPromoter Regions GeneticMolecular BiologyGeneDNA PrimersExpressed Sequence TagsComparative genomicsGeneticsBinding SitesbiologyGene Transfer TechniquesComputational BiologyMolecular Sequence AnnotationPromoterGenomicsGeneral MedicineSea urchin Neural development Gene expression Phylogenetic footprint Cis-regulatory analysisbiology.organism_classificationGene Expression RegulationRegulatory sequenceParacentrotusOrthologous GeneMolecular Biology Reports
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Ectopic hbox12 Expression Evoked by Histone Deacetylase Inhibition Disrupts Axial Specification of the Sea Urchin Embryo

2015

Dorsal/ventral patterning of the sea urchin embryo depends upon the establishment of a Nodal-expressing ventral organizer. Recently, we showed that spatial positioning of this organizer relies on the dorsal-specific transcription of the Hbox12 repressor. Building on these findings, we determined the influence of the epigenetic milieu on the expression of hbox12 and nodal genes. We find that Trichostatin-A, a potent and selective histone-deacetylases inhibitor, induces histone hyperacetylation in hbox12 chromatin, evoking broad ectopic expression of the gene. Transcription of nodal concomitantly drops, prejudicing dorsal/ventral polarity of the resulting larvae. Remarkably, impairing hbox12 …

Embryo NonmammalianNodal Proteinlcsh:MedicineRepressorSettore BIO/11 - Biologia MolecolareHydroxamic AcidsHistone DeacetylasesGene expressionAnimalsEpigeneticsPromoter Regions Geneticlcsh:ScienceBody PatterningHomeodomain ProteinsMultidisciplinarybiologylcsh:RGene Expression Regulation DevelopmentalAcetylationhistone deacetylase axial specification transcription repressor sea urchin embryoMolecular biologyChromatinChromatinHistone Deacetylase InhibitorsHistoneSea Urchinsbiology.proteinlcsh:QEctopic expressionHistone deacetylaseNODALResearch Article
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Inhibitory activities of short linear motifs underlie Hox interactome specificity in vivo

2015

Hox proteins are well-established developmental regulators that coordinate cell fate and morphogenesis throughout embryogenesis. In contrast, our knowledge of their specific molecular modes of action is limited to the interaction with few cofactors. Here, we show that Hox proteins are able to interact with a wide range of transcription factors in the live Drosophila embryo. In this context, specificity relies on a versatile usage of conserved short linear motifs (SLiMs), which, surprisingly, often restrains the interaction potential of Hox proteins. This novel buffering activity of SLiMs was observed in different tissues and found in Hox proteins from cnidarian to mouse species. Although th…

Embryo Nonmammalian[SDV]Life Sciences [q-bio]Amino Acid MotifsinteractomeInteractomeBimolecular fluorescence complementationMiceTARGET GENEDrosophila ProteinsCELL REGULATIONProtein Interaction MapsBiology (General)Hox genetranscription factorGeneticsD. melanogasterGeneral NeuroscienceQRINTERACTION MODULESGeneral MedicineREGIONSHoxTRANSCRIPTION FACTORSDrosophila melanogasterGenomics and Evolutionary BiologyOrgan Specificityembryonic structuresMedicineOligopeptidesProtein BindingResearch Articleanimal structuresQH301-705.5ScienceembryoContext (language use)Computational biology[SDV.BC]Life Sciences [q-bio]/Cellular BiologyCell fate determinationBiologyBinding CompetitiveGeneral Biochemistry Genetics and Molecular BiologyFluorescenceProtein–protein interactionEvolution MolecularStructure-Activity Relationship[SDV.BBM] Life Sciences [q-bio]/Biochemistry Molecular BiologyAnimalsShort linear motif[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyBiFCTranscription factor[SDV.BC] Life Sciences [q-bio]/Cellular BiologydevelopmentHomeodomain ProteinsABDOMINAL-AGeneral Immunology and MicrobiologyBIMOLECULAR FLUORESCENCE COMPLEMENTATIONREPRESSIONDNAPROTEIN INTERACTIONSIntrinsically Disordered ProteinsDROSOPHILA-MELANOGASTERMutationeLife
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Constitutive Promoter Occupancy by the MBF-1 Activator and Chromatin Modification of the Developmental Regulated Sea Urchin α-H2A Histone Gene

2007

The tandemly repeated sea urchin alpha-histone genes are developmentally regulated. These genes are transcribed up to the early blastula stage and permanently silenced as the embryos approach gastrulation. As previously described, expression of the alpha-H2A gene depends on the binding of the MBF-1 activator to the 5' enhancer, while down-regulation relies on the functional interaction between the 3' sns 5 insulator and the GA repeats located upstream of the enhancer. As persistent MBF-1 binding and enhancer activity are detected in gastrula embryos, we have studied the molecular mechanisms that prevent the bound MBF-1 from trans-activating the H2A promoter at this stage of development. Her…

Embryo Nonmammaliananimal structuresRestriction MappingMBF-1Down-RegulationEnhancer RNAschromatin immunoprecipitationBiologyHistone DeacetylasesactivatorHistonesHistone H3Histone H1Structural BiologyHistone H2AHistone methylationAnimalsNucleosomeHistone codenucleosome phasingPromoter Regions GeneticEnhancerBase PairingMolecular Biologyhistone modificationsGene Expression Regulation DevelopmentalGastrulaMolecular biologyChromatinNucleosomesRepressor ProteinsMutagenesis InsertionalEnhancer Elements GeneticSea Urchinsembryonic structuresTrans-ActivatorsCalmodulin-Binding ProteinsInsulator Elementssea urchin histone geneProtein Processing Post-TranslationalProtein BindingJournal of Molecular Biology
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Cloning of Several Genes Coding for Retinoic Acid Nuclear Receptors in the Mouse Embryonal Carcinoma Cell Line PCC7–MZ1

1993

Mouse embryonal carcinoma cell line PCC7-Mz1 can be induced by retinoic acid (RA) to differentiate into several well defined phenotypes of neuroectodermal origin (Lang, E. et al. (1989) J. Cell. Biol. 109, 2481-2493). Several subclones of the cell line (clonal variants) differ from each other in their developmental potential. To test whether these differences in cellular fate are due to somatic mutations in specific genes of these cells, we have cloned full length cDNAs coding for the alpha 1 and beta 2 isoforms, and partial length cDNAs coding for the alpha 2, beta 1 and beta 3 isoforms of the retinoic acid nuclear receptor (RAR). The cloned cDNAs did not differ in sequence from those of n…

Embryonal Carcinoma Stem CellsReceptors Retinoic AcidSomatic cellCellular differentiationMolecular Sequence DataRetinoic acidTretinoinBiologyEmbryonal carcinomaMicechemistry.chemical_compoundTumor Cells CulturedmedicineAnimalsHumansAmino Acid SequenceCloning MolecularPromoter Regions GeneticGenePharmacologyCloningBase SequenceNuclear ProteinsEmbryonal Carcinoma Stem CellsCell DifferentiationDNAmedicine.diseaseMolecular biologyRecombinant ProteinsRetinoic acid receptorchemistryNeoplastic Stem CellsCarrier ProteinsJournal of Receptor Research
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Persistence of low back pain reporting among a cohort of employees in a metal corporation: A study with 5-, 10-, and 28-year follow-ups

2005

Low back pain (LBP) is a common symptom among adults but little is known about its persistence over time in defined populations. The aim of this study was to examine the persistence of LBP among a cohort of industrial employees studied in four successive surveys during a total of 28 years. Cross-tabulations and logistic regression was used to estimate the interdependence of LBP occurrence at the surveys. At baseline, 54% of the subjects reported local LBP and 25% LBP radiating to the lower limb(s). Persistent or recurrent LBP was common. Of those with LBP at baseline, 75, 73, and 88% reported it also at the 5-, 10- or 28-year follow-up, respectively. Of those with radiating pain, 66, 65, an…

Employmentmedicine.medical_specialtyLogistic regressionRisk AssessmentSeverity of Illness IndexLower limbPersistence (computer science)Cohort StudiesAge DistributionRecurrenceSurveys and Questionnaireshealth services administrationmedicineIndustrySex DistributionProspective cohort studyFinlandPain MeasurementReferred painbusiness.industryIncidencepathological conditions signs and symptomsOdds ratioLow back painnervous system diseasesbody regionsAnesthesiology and Pain MedicineNeurologyMetallurgyCohortPhysical therapypopulation characteristicsNeurology (clinical)medicine.symptombusinessLow Back PainFollow-Up StudiesPain
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Functional interaction of estrogen receptor α and caveolin isoforms in neuronal SK-N-MC cells

2003

Estrogen receptors (ERs) are expressed in neuronal cells and exhibit a wide variety of activities in the central nervous system. The actions of ERs are regulated in a hormone-dependent manner as well as by a number of co-activators and -repressors. A recently identified co-activator of ERalpha is caveolin-1 which has been shown to mediate the ligand-independent activation of this steroid receptor. In the present study we have demonstrated that neuronal SK-N-MC cells lacking functional ERalpha show high levels of caveolin-1/-2 specific transcripts and proteins. Ectopic expression of ERalpha in SK-N-MC cells leads to the transcriptional suppression of caveolin-1 and -2 genes. This silencing e…

Endocrinology Diabetes and MetabolismCaveolin 1Clinical BiochemistryEstrogen receptorBiologyLigandsCaveolinsMethylationModels BiologicalBiochemistryHistone DeacetylasesEstrogen-related receptor alphaEndocrinologyTumor Cells CulturedHumansProtein IsoformsPromoter Regions GeneticDNA Modification MethylasesMolecular BiologyEstrogen receptor betaNeuronsEstrogen Receptor alphaBrainCell BiologyChromatinHormonesChromatinReceptors EstrogenCaveolin 1DNA methylationCancer researchMolecular MedicineCpG IslandsEstrogen-related receptor gammaEstrogen receptor alphaProtein BindingThe Journal of Steroid Biochemistry and Molecular Biology
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Differential regulation of endothelial cell adhesion molecule expression by nitric oxide donors and antioxidants.

1998

Although nitric oxide (NO) and antioxidants inhibit adhesion molecule expression, their inhibitory effects on nuclear factor kappaB (NF-kappaB) activation may differ. The NO donors, but not 8-bromo-cGMP, decreased tumor necrosis factor alpha (TNF-alpha)-induced VCAM-1, ICAM-1, and E-selectin expression by 11-70%. In contrast, NAC completely abolished VCAM-1 and E-selectin expression and decreased ICAM-1 expression by 56%. Gel shift assays demonstrate that NF-kappaB activation was inhibited by both NO and antioxidants. The activation of NF-kappaB involves the phosphorylation and degradation of its cytoplasmic inhibitor IkappaB-alpha by 26S proteasomes. The 26S proteasome inhibitor MG132 prev…

EndotheliumImmunologyVascular Cell Adhesion Molecule-1IκB kinaseBiologyProtein Serine-Threonine KinasesNitric OxideAntioxidantsNitric oxidechemistry.chemical_compoundMiceNF-KappaB Inhibitor alphaMG132medicineImmunology and AllergyAnimalsHumansPromoter Regions GeneticCells CulturedI-Kappa-B KinaseNF-kappa BCell BiologyIntercellular Adhesion Molecule-1Molecular biologyI-kappa B KinaseDNA-Binding Proteinsmedicine.anatomical_structurechemistryProteasomePhosphorylationTumor necrosis factor alphaI-kappa B ProteinsEndothelium VascularE-SelectinCell Adhesion MoleculesJournal of leukocyte biology
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Different Wings Flowfields Interaction on the Wing-Propeller Coupling

1997

A high-portability numerical technique based on the method of free wake analysis (FWA) is described that analyzes the interference between an aircraft propeller and a wing having different planforms and computes the influence of the wing aerodynamic field on the propeller performance. For an isolated propeller and wing, the models employed are based on the FWA and Prandtl theory, respectively. The performance of the propeller in the presence of the wing is related to the wing angle of attack and to the variation of wing circulation and the corresponding induced velocity at the propeller disk. A numerical model, previously and successfully used, was implemented to account for the effects of …

Engineeringanimal structuresbusiness.product_categoryAngle of attackbusiness.industrymusculoskeletal neural and ocular physiologyPropeller (aeronautics)Blade pitchtechnology industry and agricultureAerospace EngineeringWing configurationmacromolecular substancesMechanicsAirplanebody regionsWashout (aeronautics)Wing twistPropulsorbusinessMarine engineeringJournal of Aircraft
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