Search results for "REGULATION"

showing 10 items of 4463 documents

Acting locally - affecting globally: RNA sequencing of gilthead sea bream with a mild Sparicotyle chrysophrii infection reveals effects on apoptosis,…

2019

[Background] Monogenean flatworms are the main fish ectoparasites inflicting serious economic losses in aquaculture. The polyopisthocotylean Sparicotyle chrysophrii parasitizes the gills of gilthead sea bream (GSB, Sparus aurata) causing anaemia, lamellae fusion and sloughing of epithelial cells, with the consequent hypoxia, emaciation, lethargy and mortality. Currently no preventive or curative measures against this disease exist and therefore information on the host-parasite interaction is crucial to find mitigation solutions for sparicotylosis. The knowledge about gene regulation in monogenean-host models mostly comes from freshwater monopysthocotyleans and almost nothing is known about …

0106 biological sciencesGillGillsApoptosis01 natural sciencesTranscriptomeSparus aurataGene expression0303 health sciencesHigh-Throughput Nucleotide Sequencingmedicine.anatomical_structureLiverHelminthiasis AnimalMonogeneaBiotechnologyResearch ArticleFish Proteinsanimal structureslcsh:QH426-470lcsh:BiotechnologyFisheriesSpleenBiologyMicrobiologyHost-Parasite Interactions03 medical and health sciencesImmune systemIllumina RNA-seqImmunitylcsh:TP248.13-248.65GeneticsmedicineAutophagyAnimals14. Life underwaterPlatelet activationImmune responseTranscriptomics030304 developmental biologyCell ProliferationSequence Analysis RNASparus aurata Sparicotyle chrysophrii Gills Monogenea Ectoparasites Illumina RNA-seq Transcriptomics Apoptosis Immune responseGene Expression ProfilingAquatic animalSea Breamlcsh:GeneticsGene Expression RegulationPlatyhelminthsSparicotyle chrysophriiEctoparasitesSpleen010606 plant biology & botany
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Isolation and characterization of a Vitis vinifera transcription factor, VvWRKY1, and its effect on responses to fungal pathogens in transgenic tobac…

2007

International audience; Pathogen attack represents a major problem for viticulture and for agriculture in general. At present, the use of phytochemicals is more and more restrictive, and therefore it is becoming essential to control disease by having a thorough knowledge of resistance mechanisms. The present work focused on the trans-regulatory proteins potentially involved in the control of the plant defence response, the WRKY proteins. A full-length cDNA, designated VvWRKY1, was isolated from a grape berry library (Vitis vinifera L. cv. Cabernet Sauvignon). It encodes a polypeptide of 151 amino acids whose structure is characteristic of group IIc WRKY proteins. VvWRKY1 gene expression in …

0106 biological sciencesGénomique et Biotechnologie des FruitsPhysiologyTransgenesalicylic acid[SDV]Life Sciences [q-bio]Amino Acid MotifsMolecular Sequence DataWRKY transcription factorPlant ScienceGenetically modified cropsBiology01 natural sciences03 medical and health scienceschemistry.chemical_compoundplant resistance to pathogensGene Expression Regulation PlantComplementary DNABotanyGene expressionTobacco[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyVitisCloning MolecularPathogen030304 developmental biologyPlant Proteins2. Zero hungerGeneticschemistry.chemical_classification0303 health sciencesBase SequenceFungifood and beveragesPlants Genetically ModifiedWRKY protein domainImmunity InnateAmino acid[SDV.BV.PEP]Life Sciences [q-bio]/Vegetal Biology/Phytopathology and phytopharmacychemistrySalicylic acid010606 plant biology & botanyTranscription Factors
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Type 2 histone deacetylases play a major role in the control of elicitor-induced cell death in tobacco

2011

article addendum : Bourque S, Dutartre A, Hammoudi V, Blanc S, Dahan J, Jeandroz S, Pichereaux C, Rossignol M, Wendehenne D., 2011. Type-2 histone deacetylases as new regulators of elicitorinduced cell death in plants. New Phytologist, 192 (1), 127–139. DOI: 10.1111/j.1469-8137.2011.03788.x; International audience; The cell death which characterizes the onset of the Hypersensitive Response (HR) is a very important weapon evolved by plants to block pathogen development. By the use of numerous plant/avirulent pathogen or plant/elicitor models, we have now obtained detailed signalling pathways allowing, after pathogen or elicitor perception, the control of the expression of specific sets of ge…

0106 biological sciencesHypersensitive responseProgrammed cell death[SDV]Life Sciences [q-bio]Histone Deacetylase 2Plant ScienceModels Biological01 natural sciences03 medical and health sciencesGene Expression Regulation PlantHDACPlant CellsTobaccoNuclear proteinPlant Proteinsacetylation030304 developmental biology0303 health scienceselicitorbiologyphosphorylationHistone deacetylase 2nucleusfood and beveragesprotein kinaseAddendumElicitorCell biologycell deathHistonebiology.proteinHistone deacetylaseSignal transductionSignal Transduction010606 plant biology & botanyPlant Signaling & Behavior
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Integrated signaling network involving calcium, nitric oxide, active oxygen species but not mitogen-activated protein kinases in BcPG1-elicited grape…

2006

We have already reported the identification of the endopolygalacturonase 1 (BcPG1) from Botrytis cinerea as a potent elicitor of defense responses in grapevine, independently of its enzymatic activity. The aim of the present study is the analysis of the signaling pathways triggered by BcPG1 in grapevine cells. Our data indicate that BcPG1 induces a Ca2+ entry from the apoplasm, which triggers a phosphorylation-dependent nitric oxide (NO) production via an enzyme probably related to a NO synthase. Then NO is involved in i) cytosolic calcium homeostasis, by activating Ca2+ release from internal stores and regulating Ca2+ fluxes across the plasma membrane, ii) plasma membrane potential variat…

0106 biological sciencesMAPK/ERK pathwayTime FactorsPhysiology[SDV]Life Sciences [q-bio]Phenylalanine ammonia-lyase01 natural sciencesNitric oxideFungal Proteins03 medical and health scienceschemistry.chemical_compounddepolarizationGene Expression Regulation Plantplant defensenitric oxideVitisdépolarisationProtein kinase ACells Cultured030304 developmental biology0303 health scienceselicitorbiologyelicitor; grapevine; plant defense; nitric oxideKinaseGeneral MedicinePlants Genetically ModifiedElicitorgrapevinechemistryBiochemistryMitogen-activated protein kinasebiology.proteinCalciumBotrytisMitogen-Activated Protein KinasesSignal transductionbotrytis cinereavigneReactive Oxygen SpeciesAgronomy and Crop ScienceSignal Transduction010606 plant biology & botany
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Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions

2009

46 pages, 4 tables, 6 figures, 3 additinoal files.

0106 biological sciencesMESH: Genome PlantArabidopsis thalianaGene regulatory networkArabidopsis01 natural sciencesTranscriptomeGene Expression Regulation PlantArabidopsisMESH: Gene Expression Regulation DevelopmentalCluster AnalysisGene Regulatory NetworksMESH: ArabidopsisMESH: EcosystemMESH: Models GeneticOligonucleotide Array Sequence AnalysisMESH: Gene Regulatory NetworksGenetics0303 health sciencesMESH: Stress MechanicalbiologyMESH: Genomicsfood and beveragesGene Expression Regulation DevelopmentalGenomicsPhenotypeAlgorithmsGenome PlantMESH: MutationSystems biologyGenomicsMESH: AlgorithmsComputational biologyMESH: Arabidopsis ProteinsMESH: Phenotype03 medical and health sciencesMESH: Gene Expression Profiling[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyMESH: Gene Expression Regulation PlantEcosystem030304 developmental biologyModels GeneticMicroarray analysis techniquesArabidopsis ProteinsGene Expression ProfilingResearchfungiRobustness (evolution)biology.organism_classificationMESH: Cluster AnalysisGene expression profilingMutationMESH: Oligonucleotide Array Sequence AnalysisStress Mechanical010606 plant biology & botany
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Spatial monitoring of gene activity in extraradical and intraradical developmental stages of arbuscular mycorrhizal fungi by direct fluorescent in si…

2008

International audience; Gene expression profiling based on tissue extracts gives only limited information about genes associated with complex developmental processes such as those implicated in fungal interactions with plant roots during arbuscular mycorrhiza development and function. To overcome this drawback, a direct fluorescent in situ RT-PCR methodology was developed for spatial mapping of gene expression in different presymbiotic and symbiotic structures of an arbuscular mycorrhizal fungus. Transcript detection was optimized by targeting the LSU rRNA gene of Glomus intraradices and monitoring expression of a stearoyl-CoA-desaturase gene that is consistently expressed at high levels in…

0106 biological sciencesMYCORHIZES A ARBUSCULESGENE EXPRESSIONHyphaGLOMUS INTRARADICESDIRECT FLUORESCENT IN SITU RT-PCR01 natural sciencesMicrobiologyPlant RootsARBUSCULAR MYCORRHIZAL FUNGIFungal ProteinsSUPEROXIDE DISMUTASE03 medical and health sciencesFungal StructuresGene Expression Regulation FungalMycorrhizaeBotanyGene expressionGeneticsMedicagoCONFOCAL MICROSCOPYGene030304 developmental biologyDNA PrimersFluorescent DyesPeptidylprolyl isomerase0303 health sciences[SDV.GEN]Life Sciences [q-bio]/GeneticsMicroscopy ConfocalbiologyPEPTIDYLPROPYL ISOMERASEReverse Transcriptase Polymerase Chain ReactionGene Expression ProfilingfungiSYMBIOSISGene Expression Regulation DevelopmentalPeptidylprolyl Isomerasebiology.organism_classificationMedicago truncatulaCell biologyArbuscular mycorrhizaGene expression profilingSTEAROYL-CoA-DESATURASEXanthenesMEDICAGO TRUNCATULAStearoyl-CoA Desaturase010606 plant biology & botany
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Drosophila cuticular hydrocarbons revisited : Mating status alters cuticular profiles

2010

Editor: Frederic Marion-Poll, INRA - Paris 6 - AgroParisTech, France.; International audience; Most living organisms use pheromones for inter-individual communication. In Drosophila melanogaster flies, several pheromones perceived either by contact/at a short distance (cuticular hydrocarbons, CHs), or at a longer distance (cis-vaccenyl acetate, cVA), affect courtship and mating behaviours. However, it has not previously been possible to precisely identify all potential pheromonal compounds and simultaneously monitor their variation on a time scale. To overcome this limitation, we combined Solid Phase Micro-Extraction with gas-chromatography coupled with mass-spectrometry. This allowed us (i…

0106 biological sciencesMalecis-vaccenyl acetate[ SDV.AEN ] Life Sciences [q-bio]/Food and NutritionSPMElcsh:MedicineEvolutionary Biology/Sexual Behaviorgustation01 natural sciencesMass SpectrometryPheromonessexeCourtshipSexual Behavior AnimalMatinglcsh:ScienceComputingMilieux_MISCELLANEOUSmedia_common0303 health sciencesMultidisciplinaryEcologyShort distancematingDrosophila melanogasterSex pheromoneFemaleDrosophila melanogasterin-vivo samplingResearch ArticleolfactionChromatography Gasmedia_common.quotation_subject[SDV.BC]Life Sciences [q-bio]/Cellular Biologymating;cuticular hydrocarbon;cis-vaccenyl acetate;in-vivo sampling;SPMEBiologyChemical communication010603 evolutionary biology03 medical and health sciencesEcology/Behavioral EcologyAnimalsHexanesphéromoneDrosophilaSolid Phase Microextraction030304 developmental biologyEvolutionary Biology/Animal Behaviorlcsh:RfungiReproducibility of ResultsDevelopmental Biology/Agingbiology.organism_classificationHydrocarbonsGene Expression RegulationEvolutionary biologycuticular hydrocarbonlcsh:Q[SDV.AEN]Life Sciences [q-bio]/Food and NutritionFunction (biology)
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Extending full protection inside existing marine protected areas, or reducing fishing effort outside, can reconcile conservation and fisheries goals

2020

Most fish stocks world-wide are fished at maximum sustainable yield (MSY) or overfished, as many fisheries management strategies have failed to achieve sustainable fishing. Identifying effective fisheries management strategies has now become urgent. Here, we developed a spatially explicit metapopulation model accounting for population connectivity in the north-western Mediterranean Sea, and parameterized it for three ecologically and economically important coastal fish species: the white seabream Diplodus sargus, the two-banded seabream Diplodus vulgaris and the dusky grouper Epinephelus marginatus. We used the model to assess how stock biomass and catches respond to changes in fishing mort…

0106 biological sciencesMarine conservationStock assessmentEcology010604 marine biology & hydrobiologyFishingCoastal fish010603 evolutionary biology01 natural sciencesFisheryMediterranean seaGeographyAUTMarine protected area14. Life underwaterFisheries management[SDE.BE]Environmental Sciences/Biodiversity and Ecologycoastal fish fisheries management fishing effort regulation marine conservation marine protected areas Mediterranean Sea metapopulation models
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Regulation of plant NADPH oxidase.

2007

Addendum to: Regulation of Reactive Oxygen Species Production by a 14-3-3 Protein in Elicited Tobacco Cells. T. Elmayan, J. Fromentin, C. Riondet, G. Alcaraz, J. Blein and F. Simon-Plas. Plant Cell Environ 2007; 30:722–32; International audience; The production of Reactive Oxygen Species (ROS) is one of the key events occurring during the response of plants to environmental changes, and contributing to establish adaptive signaling pathways. A plasma membrane bound NADPH oxidase enzyme has been evidenced as the ROS producing system in various plant‑microorganisms interactions. We very recently reported, that a protein of the 14‑3‑3 family was able to interact directly with the C‑terminus par…

0106 biological sciencesMembrane boundContext (language use)Plant Science01 natural sciences[SDV.GEN.GPL]Life Sciences [q-bio]/Genetics/Plants genetics03 medical and health sciences[SDV.GEN.GPL] Life Sciences [q-bio]/Genetics/Plants geneticsNADPH OXIDASEPlant defense against herbivoryREACTIVE OXYGEN SPECIES14-3-3030304 developmental biologyPROTEINE PHOSPHATASE TYPE 2Cchemistry.chemical_classification0303 health sciencesReactive oxygen speciesOxidase testNADPH oxidasebiologyTWO-HYBRIDArticle AddendumEnzymeBiochemistrychemistryREGULATIONbiology.proteinSignal transduction010606 plant biology & botanyPlant signalingbehavior
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Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization

2010

Abstract Background The shell of the pearl-producing bivalve Pinctada margaritifera is composed of an organic cell-free matrix that plays a key role in the dynamic process of biologically-controlled biomineralization. In order to increase genomic resources and identify shell matrix proteins implicated in biomineralization in P. margaritifera, high-throughput Expressed Sequence Tag (EST) pyrosequencing was undertaken on the calcifying mantle, combined with a proteomic analysis of the shell. Results We report the functional analysis of 276 738 sequences, leading to the constitution of an unprecedented catalog of 82 P. margaritifera biomineralization-related mantle protein sequences. Component…

0106 biological sciencesModels MolecularProteomicsProteome[SDV]Life Sciences [q-bio]Proteomics01 natural sciencesContig MappingMantle (mollusc)MargaritiferaIn Situ HybridizationGeneticsExpressed Sequence Tags0303 health sciencesMineralsbiologyPinctada margaritifera[ SDV.BBM.GTP ] Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]ProteomeBiotechnologyResearch Articlelcsh:QH426-470Sequence analysislcsh:BiotechnologyMolecular Sequence Data010603 evolutionary biology03 medical and health sciencesCalcification Physiologiclcsh:TP248.13-248.65[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]GeneticsAnimals[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyAmino Acid SequencePinctadaRNA Messenger[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/Biomaterials030304 developmental biologyBase SequenceSequence Homology Amino AcidGene Expression ProfilingAnimal StructuresMolecular Sequence AnnotationSequence Analysis DNAbiology.organism_classification[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/Biomaterialslcsh:GeneticsGene Expression RegulationEvolutionary biologyPinctadaBiomineralization
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