Search results for "RELATION"

showing 10 items of 10542 documents

Relationships between kinetic constants and the amino acid composition of enzymes from the yeast Saccharomyces cerevisiae glycolysis pathway

2012

The kinetic models of metabolic pathways represent a system of biochemical reactions in terms of metabolic fluxes and enzyme kinetics. Therefore, the apparent differences of metabolic fluxes might reflect distinctive kinetic characteristics, as well as sequence-dependent properties of the employed enzymes. This study aims to examine possible linkages between kinetic constants and the amino acid (AA) composition (AAC) for enzymes from the yeast Saccharomyces cerevisiae glycolytic pathway. The values of Michaelis-Menten constant (K M), turnover number (k cat), and specificity constant (k sp = k cat/K M) were taken from BRENDA (15, 17, and 16 values, respectively) and protein sequences of nine…

chemistry.chemical_classificationSpecificity constantbiologyResearchSaccharomyces cerevisiaeMichaelis-Menten constantTurnover numberbiology.organism_classificationMichaelis–Menten kineticsGeneral Biochemistry Genetics and Molecular BiologyYeastComputer Science ApplicationsAmino acidSequence-dependent propertiesComputational MathematicsMetabolic pathwayEnzymechemistryBiochemistryGlycolytic enzymesMultivariate relationshipsEnzyme kineticsSpecificity constantEURASIP Journal on Bioinformatics and Systems Biology
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On the use of multi-parameter free energy relationships: the rearrangement of (Z)-arylhydrazones of 5-amino-3-benzoyl-1,2,4-oxadiazole into (2-aryl-5…

2010

Abstract By using a multi-parameter approach (a combination of Hammett/Ingold-Yukawa-Tsuno/Fujita-Nishioka free energy relationships) the mononuclear rearrangements of heterocycles (MRH) rates for five new ortho-substituted and ten new di-, tri-, or tetra-substituted (Z)-arylhydrazones of 5-amino-3-benzoyl-1,2,4-oxadiazole into the relevant (2-aryl-5-phenyl-2H-1,2,3-triazol-4-yl)ureas (in dioxane/water and in a large range of pS+ values) have been related to the electronic and proximity effects exerted by the present substituents, also considering previous results on some mono meta- and para-substituted (Z)-arylhydrazones. In every case, excellent correlation coefficients have been calculat…

chemistry.chemical_classificationStereochemistryYukawa–Tsuno equationArylOrganic Chemistryring to ring interconversion structure/reactivity relationships changeover of mechanismOxadiazoleHydrazoneSettore CHIM/06 - Chimica OrganicaBiochemistrychemistry.chemical_compoundAcid catalysischemistryDrug DiscoveryElectronic effectMoietyReactivity (chemistry)
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Herbicidally Active Derivatives of Aminomethylenebis-Phosphonic Acid-Mode of Action and Structure - Activity Relationship

1996

Abstract: (N-pyridylamino)methylenebisphosphonates exhibit strong herbicidal activity which may be reversed by supplementation of the growth media with aromatic amino acids. They appeare to be the inhibitors of aromatic amino acids biosynthesis acting as inhibitors of DAHP synthase the first enzyme of shikimate pathway. Over 40 analogues of these acids were synthesized in order to determine the structure-activity relationship.

chemistry.chemical_classificationamino acid biosynthesisbiologyStereochemistryOrganic Chemistry(N-pyridylamino)methylenebisphosphonatesDAHP synthaseBiochemistryInorganic Chemistrychemistry.chemical_compound(N-pyridylamino)methylenebisphosphonates; amino acid biosynthesis; inhibitorsEnzymechemistryBiosynthesisinhibitorsbiology.proteinAromatic amino acidsStructure–activity relationshipShikimate pathwayMode of actionPhosphorus, Sulfur, and Silicon and the Related Elements
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Struktur-Wirkungs-Beziehungen bei Analeptica vom Typ des Nicethamids, 3. Mitt. Synthese von Analogen des 6-Methyl-nicethamids

1975

Als potentiell analeptisch wirksame Substanzen mit partiell fixierter funktioneller Gruppe werden strukturanaloge Amide, Imide und Lactame des 2-Methyl-nicethamids synthetisiert. Synthesis of 2-Methyl-Nicethamide Analogues. As potentially analeptically active substances with partially fixed functional groups, structural analogues of 2-methyl-nicethamide, in the form of amides, imides and lactams, are synthesized.

chemistry.chemical_compoundChemistryStereochemistryAmideDrug DiscoveryPharmaceutical ScienceStructure–activity relationshipImideArchiv der Pharmazie
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Multivariate correlation between13C and31P NMR spectral data on dissolved lignin and the combustion properties of kraft black liquor

1999

chemistry.chemical_compoundChromatographyChemistrySize-exclusion chromatographyLigninGeneral Materials ScienceMultiple correlationGeneral ChemistryCarbon-13 NMRSpectral dataCombustionBlack liquorKraft paperMagnetic Resonance in Chemistry
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Linear free energyortho-correlations in the thiophene series. Part IX . Kinetics of esterification with diazodiphenylmethane of some 3-, 4-, and 5-su…

1981

The rate constants for the esterification of some 3-, 4-, and 5-substituted thiophene-2-carboxylic acids with diazodiphenylmethane in methanol at 25° have been measured. The reactivity of some para- and ortho-substituted benzoic acids has also been determined. Logarithmic kinetic constants for ortho-, meta-, and para-like substituted thiophene-2-carboxylic acids furnish an excellent linear free energy relationship when plotted versus Δpka (β 0.89, r 0.989, C.L. > 99.9%, n 18, i 0.04), thus confirming the peculiar behaviour of five-membered ring derivatives. The correlation with σH values offers an additional proof of the hyper-ortho character of the 2,3-relation in thiophene derivatives. pa…

chemistry.chemical_compoundDiazodiphenylmethaneReaction rate constantChemistryOrganic ChemistryKineticsThiopheneOrganic chemistryReactivity (chemistry)MethanolFree-energy relationshipRing (chemistry)Medicinal chemistryJournal of Heterocyclic Chemistry
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ChemInform Abstract: A Theoretical Determination of the Dissociation Energy of the Nitric Oxide Dimer.

2010

Multi-reference CI methods have been applied to determine the dissociation energy and structure of thecis-N2O2 molecule. The convergence of the theoretical result has been checked with respect to a systematic expansion of the one-electron basis set and the multi-reference CI wave function. The best calculated value, 13.8 kJ/mol, is in agreement with the experimental value, 12.2 kJ/mol. It has been obtained with an extended ANO-type basis set [6s5p3d2f], including the effect of the basis set superposition error (BSSE) in the geometry optimization, and additional effects, such as the electron correlation of core electrons and relativistic corrections, using the average coupled pair functional…

chemistry.chemical_compoundElectronic correlationCore electronStereochemistryChemistryDimerMoleculeThermodynamicsGeneral MedicineEnergy minimizationWave functionBond-dissociation energyBasis setChemInform
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An Accurate Quartic Force Field and Fundamental Frequencies for the Ozonide Anion: A Rare Positive Anharmonicity for the Antisymmetric Stretch

2003

The CCSD(T) method has been used to compute a highly accurate quartic force field and fundamental frequencies for all 16O and 18O isotopomers of the ozonide anion. The CCSD and CASPT2 methods have also been used to verify the reliability of the CCSD(T) fundamental frequencies. The computed fundamental frequencies are in agreement with gas-phase experiments, but disagree with matrix isolation experiments for the antisymmetric stretch, ν3. CASPT2 calculations show that the antisymmetric part of the O3- potential surface is sensitive to the external environment. It is concluded that the antisymmetric stretch exhibits a significant matrix shift in the matrix isolation experiments and that the m…

chemistry.chemical_compoundMatrix (mathematics)chemistryComputational chemistryAb initio quantum chemistry methodsForce field (physics)Antisymmetric relationQuartic functionAnharmonicityMatrix isolationOzonideGeneral ChemistryMolecular physicsCollection of Czechoslovak Chemical Communications
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Chemistry of glycopeptides

1999

For a long time, peptides and proteins on the one hand and carbohydrates on the other have been considered separate classes of natural products. The rather strict distinction between these major fields of natural product chemistry is still apparent not only in the organisation of chemistry text books but also in the different approaches to immunological and cell biological recognition phenomena.

chemistry.chemical_compoundNatural productChemistryOrganic chemistryChemistry (relationship)Natural (archaeology)
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Oxygen, Its Nature and Chemistry: What Is so Special About This Element?

2010

It would seem that an introduction to oxygen is unnecessary, for we deal with it and depend upon it every moment of our lives. Oxygen is to us the essential stuff of the air we breathe. We are aerobic animals who obtain energy by oxidizing foodstuffs. As such, we are wholly dependent on oxygen for life – go without it for a couple of minutes and we panic and may even suffer irreversible brain damage. In a few more minutes, we perish. Animal metabolism depends upon oxygen for almost all of its energy-generating processes. Yet this was not always so. Early in the history of the Earth, there was essentially no free oxygen anywhere, although oxygen has always been one of the most abundant eleme…

chemistry.chemical_compoundTriplet oxygenchemistryOxidizing agentchemistry.chemical_elementEarth (chemistry)Chemistry (relationship)Early EarthOxygenAstrobiology
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