Search results for "ROSAT"

showing 10 items of 520 documents

Microsatellite-based genotyping of Candida parapsilosis sensu stricto isolates reveals dominance and persistence of a particular epidemiological clon…

2012

In this study, using multilocus microsatellite analysis, we report the genetic characterization of 27 Candida parapsilosis isolates recovered in two different periods of time (2007-2009 and 2011-2012) from infants hospitalized in the neonatal intensive care unit of a hospital in Messina, Italy. The results revealed the persistence and dominance of a particular infectious genotype among NICU patients and highlight the power of the used microsatellite markers in clarifying epidemiologic associations, detect micro-evolutionary variations and facilitating the recognition of outbreaks. © 2012 Elsevier B.V.

Microbiology (medical)medicine.medical_specialtyCandida parapsilosisNeonatal intensive care unitGenotypeSettore MED/17 - Malattie InfettiveInfectious DiseaseCandida parapsilosisMicrobiologyDisease OutbreaksCandida orthopsilosisGeneticCandida orthopsilosiIntensive Care Units NeonatalEpidemiologyGenotypeGeneticsmedicineHumansMolecular BiologyGenotypingEcology Evolution Behavior and SystematicsCandidaDominance (genetics)ITS-sequencingGeneticsCross InfectionDisease OutbreakbiologyCandidiasisInfant NewbornOutbreakCandida metapsilosisbiology.organism_classificationCandida parapsilosis; Candida orthopsilosis; Candida metapsilosis; Molecular epidemiology; ITS-sequencing; Microsatellite genotypingEcology Evolution Behavior and SystematicCandida metapsilosiInfectious DiseasesMolecular epidemiologyCandidiasiCandida parapsilosiMicrosatellite RepeatMicrosatelliteMicrosatellite genotypingMicrosatellite RepeatsHumanMultilocus Sequence TypingInfection, Genetics and Evolution
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Hybridization of mouse lemurs: different patterns under different ecological conditions

2011

Abstract Background Several mechanistic models aim to explain the diversification of the multitude of endemic species on Madagascar. The island's biogeographic history probably offered numerous opportunities for secondary contact and subsequent hybridization. Existing diversification models do not consider a possible role of these processes. One key question for a better understanding of their potential importance is how they are influenced by different environmental settings. Here, we characterized a contact zone between two species of mouse lemurs, Microcebus griseorufus and M. murinus, in dry spiny bush and mesic gallery forest that border each other sharply without intermediate habitats…

Microcebus murinusEvolutionMolecular Sequence DataPopulationIntrogressionLemurCheirogaleidaeDNA MitochondrialLinkage DisequilibriumHybrid zonebiology.animalMadagascarQH359-425AnimalseducationEcosystemPhylogenyEcology Evolution Behavior and SystematicsDNA Primerseducation.field_of_studyBase SequenceModels GeneticbiologyEcologyBayes TheoremSequence Analysis DNAbiology.organism_classificationGenetics PopulationHaplotypesHabitatEvolutionary biologyHybridization GeneticCheirogaleidaeMicrocebus griseorufusMicrosatellite RepeatsResearch ArticleBMC Evolutionary Biology
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Tracing the first steps of American sturgeon pioneers in Europe

2008

Abstract Background A Baltic population of Atlantic sturgeon was founded ~1,200 years ago by migrants from North America, but after centuries of persistence, the population was extirpated in the 1960s, mainly as a result of over-harvest and habitat alterations. As there are four genetically distinct groups of Atlantic sturgeon inhabiting North American rivers today, we investigated the genetic provenance of the historic Baltic population by ancient DNA analyses using mitochondrial and nuclear markers. Results The phylogeographic signal obtained from multilocus microsatellite DNA genotypes and mitochondrial DNA control region haplotypes, when compared to existing baseline datasets from extan…

Mitochondrial DNAEvolutionMolecular Sequence DataPopulationZoologyBiologyDNA MitochondrialPolymerase Chain ReactionEvolution MolecularSturgeonQH359-425AnimalseducationAtlantic OceanPhylogenyEcology Evolution Behavior and Systematicseducation.field_of_studyBase SequenceChimeraFishesSequence Analysis DNAbiology.organism_classificationhumanitiesEuropePhylogeographyGenetics PopulationAncient DNAHaplotypesHabitatMicrosatelliteSequence AlignmentMicrosatellite RepeatsResearch ArticleAtlantic sturgeonBMC Evolutionary Biology
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Asymmetric allelic introgression across a hybrid zone of the coal tit (Periparus ater) in the central Himalayas*

2021

Abstract In the Himalayas, a number of secondary contact zones have been described for vicariant vertebrate taxa. However, analyses of genetic divergence and admixture are missing for most of these examples. In this study, we provide a population genetic analysis for the coal tit (Periparus ater) hybrid zone in Nepal. Intermediate phenotypes between the distinctive western “spot‐winged tit” (P. a. melanolophus) and Eastern Himalayan coal tits (P. a. aemodius) occur across a narrow range of <100 km in western Nepal. As a peculiarity, another distinctive cinnamon‐bellied form is known from a single population so far. Genetic admixture of western and eastern mitochondrial lineages was restrict…

Mitochondrial DNAPeriparusbiologyEcologybusiness.industryIntrogressionmitochondrial DNAbiology.organism_classificationmicrosatellitesHybrid zoneNepalEvolutionary biologybirdsMicrosatelliteCoalcline analysisAllelebusinesshybridizationEcology Evolution Behavior and SystematicsQH540-549.5Research ArticlesNature and Landscape ConservationResearch ArticleEcology and Evolution
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Mitochondrial simple sequenze repeats and 12s – rRNA gene reveal two distinct lineages of Crocidura russula (Mammalia, Sorcidae)

2004

A short segment (135 bp) of the control region and a partial sequence (394 bp) of the 12S-rRNA gene in the mitochondrial DNA of Crocidura russula were analyzed in order to test a previous hypothesis regarding the presence of a gene flow disruption in northern Africa. This breakpoint would have separated northeast-African C. russula populations from the European (plus the northwest-African) populations. The analysis was carried out on specimens from Tunisia (C. r. cf agilis), Sardinia (C. r. ichnusae), and Pantelleria (C. r. cossyrensis), and on C. r. russula from Spain and Belgium. Two C. russula lineages were identified; they both shared R2 tandem repeated motifs of the same length (12 bp)…

Mitochondrial DNARange (biology)Lineage (evolution)Crocidura russulaMolecular Sequence DataMtDNASettore BIO/05 - ZoologiaDNA MitochondrialMonophylyAfrica NorthernPhylogeneticsSequence Homology Nucleic AcidGeneticsAnimals12S-rRNA; Crocidura russula; MtDNA; North Africa; SSRs; ZoogeographyGenetics (clinical)PhylogenybiologyBase SequenceEcology12S-rRNAShrewsGenes rRNAbiology.organism_classificationNorth AfricaCrocidura russulaSSRRussulaMitochondriaEuropeGenetics PopulationSister groupEvolutionary biologyRNA RibosomalZoogeographySequence AlignmentSequence AnalysisMicrosatellite Repeats
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Gain-of-function mutations in IFIH1 cause a spectrum of human disease phenotypes associated with upregulated type I interferon signaling.

2014

The type I interferon system is integral to human antiviral immunity. However, inappropriate stimulation or defective negative regulation of this system can lead to inflammatory disease. We sought to determine the molecular basis of genetically uncharacterized cases of the type I interferonopathy Aicardi-Goutières syndrome, and of other patients with undefined neurological and immunological phenotypes also demonstrating an upregulated type I interferon response. We found that heterozygous mutations in the cytosolic double-stranded RNA receptor gene IFIH1 (MDA5) cause a spectrum of neuro-immunological features consistently associated with an enhanced interferon state. Cellular and biochemica…

Models MolecularInterferon-Induced Helicase IFIH1Molecular Sequence DataHDE NEU PEDElectrophoretic Mobility Shift AssayBiologymedicine.disease_causeNervous System MalformationsReal-Time Polymerase Chain ReactionArticleDEAD-box RNA HelicasesImmune systemAutoimmune Diseases of the Nervous SystemDownregulation and upregulationAnalysis of Variance; Autoimmune Diseases of the Nervous System; Base Sequence; DEAD-box RNA Helicases; Electrophoretic Mobility Shift Assay; Exome; HEK293 Cells; Humans; Interferon Type I; Microsatellite Repeats; Molecular Sequence Data; Mutation; Nervous System Malformations; Real-Time Polymerase Chain Reaction; Sequence Analysis DNA; Signal Transduction; Spectrum Analysis; Models Molecular; Phenotype; GeneticsModelsInterferonGeneticsmedicineHumansExomeMutationAnalysis of VarianceBase SequenceSpectrum AnalysisMolecularRNAMDA5DNASequence Analysis DNAMolecular biology3. Good healthInterferon Tipo IHEK293 CellsPhenotypeInterferon Type IMutationCancer researchSignal transductionSequence AnalysisInterferon type Imedicine.drugMicrosatellite RepeatsSignal TransductionNature genetics
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Genetic variability and geographical diversity of the main Chagas' disease vector Panstrongylus megistus (Hemiptera: Triatominae) in Brazil based on …

2014

Studies were made on the ribosomal DNA intergenic region, comprising complete internal transcribed spacer (ITS)-1, 5.8S, and ITS-2 sequences, of populations of the triatomine Panstrongylus megistus, the most important vector of Chagas' disease in Brazil since Triatoma infestans eradication. Specimens were from 26 localities of Rio Grande do Sul, Santa Catarina, Paraná, São Paulo, Minas Gerais, Bahia, and Sergipe states. In total, 21 ITS-1 and 12 ITS-2 haplotypes were found. Nucleotide differences were higher in ITS-1 (3.00%) than in ITS-2 (1.33%). The intergenic region was 1,513-1,522-bp-long (mean 1,516.9 bp), providing 26 combined haplotypes. The combination of microsatellites found in bo…

Molecular Sequence DataZoologyPolymerase Chain ReactionIntergenic regionTriatoma infestansDNA Ribosomal SpacerAnimalsChagas DiseaseInternal transcribed spacerRibosomal DNATriatominaeGeneticsGenetic diversityGeneral VeterinarybiologyGenetic VariationSequence Analysis DNAPanstrongylusbiology.organism_classificationInsect VectorsRNA Ribosomal 5.8SPhylogeographyInfectious DiseasesInsect ScienceVector (epidemiology)MicrosatelliteParasitologyBrazilJournal of medical entomology
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In vitro anther culture of sweet orange (Citrus sinensis L. Osbeck) genotypes and of a C. clementina × C. sinensis 'Hamlin' hybrid

2014

Citrus, and particularly sweet oranges, are very recalcitrant to anther culture. In this paper it was evaluated for the first time the response of 27 genotypes of Citrus sinensis and of one hybrid C. clementina × C. sinensis, to in vitro anther culture. Ten genotypes of sweet oranges showed embryogenic callus induction, mostly blood sweet oranges genotypes, such as Tarocco, Moro and Sanguinelli. In vitro microspore developmental switches from the gamethophytic to the sporophytic pathway were shown by DAPI staining in microspores of these responsive genotypes, after 10 months in culture. However, microsatellite marker analyses showed that these calli were heterozygous. The flow-cytometric an…

Molecular profileTri haploidfungiStamenCitrufood and beveragesEmbryoOrange (colour)BiologyHorticultureCalliSettore AGR/03 - Arboricoltura Generale E Coltivazioni ArboreeMicrosporeCallusBotanyMicrosatelliteHaploidPloidyMicrosporogenesiCitrus × sinensis
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Differential Greek and northern African migrations to Sicily are supported by genetic evidence from the Y chromosome

2009

The presence or absence of genetic heterogeneity in Sicily has long been debated. Through the analysis of the variation of Y-chromosome lineages, using the combination of haplogroups and short tandem repeats from several areas of Sicily, we show that traces of genetic flows occurred in the island, due to ancient Greek colonization and to northern African contributions, are still visible on the basis of the distribution of some lineages. The genetic contribution of Greek chromosomes to the Sicilian gene pool is estimated to be about 37% whereas the contribution of North African populations is estimated to be around 6%. In particular, the presence of a modal haplotype coming from the southern…

Most recent common ancestorGene FlowhaplotypePopulation geneticsAncient GreekHaplogroupArticleModal haplotypeGenetic HeterogeneityAfrica NorthernSettore BIO/13 - Biologia ApplicataY chromosome siciy greek and phoenician legacyGenetic variationGeneticsHumansSicilygenetics of Sicily (Italy)Genetics (clinical)PhylogenySettore MED/04 - Patologia GeneraleAnalysis of VariancePrincipal Component AnalysisChromosomes Human YGreeceY chromosomeGenetic Variationpopulation geneticsgenetics of Sicily (Italy); Y chromosome; short tandem repeats; haplotype; haplogroups; population geneticsGene PoolEmigration and Immigrationlanguage.human_languagehumanitiesshort tandem repeatsGeographyHaplotypesEvolutionary biologyhaplogroupslanguageGene poolSicilianMicrosatellite Repeats
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Silybin enhances mitochondrial function and inhibits NFkB activation in murine nonalcoholic fatty liver disease

2010

Italian Journal of Anatomy and Embryology, Vol 115, No 1/2 (Supplement) 2010

NFkBLiver histology; hepatic lipid homeostasis; mitochondrial function; oxidative-nitrosative stress
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