Search results for "Rearrangements"

showing 10 items of 43 documents

Mapping Retrotransposon LINE-1 Sequences into Two Cebidae Species and Homo sapiens Genomes and a Short Review on Primates

2022

This work focuses on the distribution of LINE-1 (a Long Interspersed Nuclear Element) in primates and its role during evolution and as a constituent of the architecture of primate genomes. To pinpoint the LINE-1 repeat distribution and its role among primates, LINE-1 probes were mapped onto chromosomes of Homo sapiens (Hominidae, Catarrhini), Sapajus apella, and Cebus capucinus (Cebidae, Platyrrhini) using fluorescence in situ hybridisation (FISH). The choice of platyrrhine species are due to the fact they are taxa characterised by a high level of rearrangements; for this reason, they could be a useful model for the study of LINE-1 and chromosome evolution. LINE-1 accumulation was found in …

Homo sapiensX ChromosomeRetroelements<i>Sapajus apella</i>; <i>Cebus capucinus</i>; <i>Homo sapiens</i>; LINE; rearrangements; centromereLINELong Interspersed Nucleotide ElementscentromereSapajus apellaKaryotypingCebidaeGeneticsCebus capucinusrearrangementsAnimalsHumansCebusGenetics (clinical)
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Synthesis of Fluorinated Indazoles Through ANRORC-Like Rearrangement of 1,2,4-Oxadiazoles with Hydrazine.

2006

A series of 6-substituted fluorinated indazoles has been obtained through an ANRORC-like rearrangement (Addition of Nucleophile, Ring-Opening and Ring-Closure) of 5-tetrafluorophenyl-1,2,4-oxadiazoles with hydrazine. The initial addition of the bidentate nucleophile to the electrophilic C(5) of the 1,2,4-oxadiazole ring, followed by ring opening and ring closure, leads to the formation of fluorinated indazoles in high yield under mild experimental conditions. Functionalization of the C(6) in the final indazole nucleus was preliminarily achieved through a nucleophilic aromatic substitution on the starting 5-pentafluorophenyl-1,2,4-oxadiazole.

IndazoleDenticityOrganic ChemistryHydrazine124-oxadiazoleGeneral MedicineRing (chemistry)BiochemistryMedicinal chemistrychemistry.chemical_compoundchemistryNucleophileNucleophilic aromatic substitutionYield (chemistry)Drug DiscoveryElectrophileindazoleOrganic chemistryfluorinated heterocycleANRORC-like rearrangementsChemInform
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Radical addition to iminium ions and cationic heterocycles

2014

Carbon-centered radicals represent highly useful reactive intermediates in organic synthesis. Their nucleophilic character is reflected by fast additions to electron deficient C=X double bonds as present in iminium ions or cationic heterocycles. This review covers diverse reactions of preformed or in situ-generated cationic substrates with various types of C-radicals, including alkyl, alkoxyalkyl, trifluoromethyl, aryl, acyl, carbamoyl, and alkoxycarbonyl species. Despite its high reactivity, the strong interaction of the radical’s SOMO with the LUMO of the cation frequently results in a high regioselectivity. Intra- and intermolecular processes such as the Minisci reaction, the Porta react…

Ionsheterocycles540 Chemistry and allied sciencesMinisci reactionphotoredox catalysisPorta reactionReviewradicalsCarbonCatalysislcsh:QD241-441transition metal catalysisModels Chemicaladdition reactionslcsh:Organic chemistryHeterocyclic CompoundsCations540 Chemieiminium saltsrearrangementslate-stage functionalization
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Fluorinated Heterocyclic Compounds. An Effective Strategy for the Synthesis of Fluorinated Z-Oximes of 3-Perfluoroalkyl-6-phenyl-2H-1,2,4-triazin- 5-…

2005

The reaction of 3-benzoyl-5-perfluoroalkyl-1,2,4-oxadiazoles with hydrazine has been investigated, evidencing the possibility of competitive reaction paths. Nucleophilic addition of the hydrazine to the electrophilic C(5) of the 1,2,4-oxadiazole ring, followed by ring opening and ring closure with enlargement, leads with high yield and in very mild experimental conditions to the formation of Z-oximes of 3-perfluoroalkyl-6-phenyl-2H-1,2,4-triazin-5-ones (11a-c) as major products of the reaction. In turn, the hydrazine can attack the electrophilic carbonyl carbon giving 4-perfluoroacylamino-5-phenyl-2H-1,2,3-triazoles (13a-c) through the well-known Boulton-Katritzky rearrangement of the inter…

KetoneTRANSFORMATIONSHydrazineHydrazoneRing (chemistry)Medicinal chemistryChemical synthesisTurn (biochemistry)chemistry.chemical_compoundCHEMISTRYROUTE3-BENZOYL-5-PHENYL-124-OXADIAZOLEOrganic chemistrychemistry.chemical_classificationNucleophilic additionDERIVATIVESOrganic ChemistryREARRANGEMENTS25-BIS(TRIFLUOROMETHYL)-134-OXADIAZOLE124-TRIAZINESSettore CHIM/06 - Chimica OrganicaGeneral MedicineOximeAROMATICITY INDEXchemistryHeterocyclic compoundYield (chemistry)ElectrophileTriazole derivatives5-MEMBERED HETEROCYCLESThe Journal of Organic Chemistry
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Human papillomavirus:Its identikit and controversial role in oral oncogenesis,premalignant an malignant lesions(Review)

2007

Human papillomaviruses (HPVs) are a group of host-specific DNA viruses, with a remarkable epithelial cell specificity: they have been reported principally in the ano-genital tract, urethra, skin, larynx, tracheo-bronchial and oral mucosa. More than 100 different HPV types have been identified and classified as high (e.g. 16, 18, 31) or low (e.g. 11, 42, 36) -risk (HR and LR), based on their association with cervical carcinoma. The carcinogenic role of HR-HPV revolves mainly around two of its oncoproteins: HPV-E6 which promotes degradation of the p53 tumour suppressor gene product and HPV-E7 which modifies the pRb tumour suppressor gene product, inhibiting the activity of TGF-beta2. Since th…

LARGE GENOMIC REARRANGEMENTSHIGH-RISKSUSCEPTIBILITY GENESMUTATIONSBREAST-CANCERTP53BREAST/OVARIAN CANCER FAMILIESOVARIAN-CANCER
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Pan-cancer analysis of whole genomes

2020

Publisher's version (útgefin grein)

Maletert promoter mutationsCancer development and immune defence Radboud Institute for Molecular Life Sciences [Radboudumc 2]DNA Mutational AnalysisNormal tissuesystematic analysisGermlineTranscriptome0302 clinical medicineAetiologyCàncerCellular SenescenceCancer0303 health sciencesdna-damageMassive parallel sequencingPan cancerREARRANGEMENTSHigh-Throughput Nucleotide SequencingGenomicsSciences bio-médicales et agricolesTelomereCOMPREHENSIVE3. Good healthTERT PROMOTER MUTATIONSsignatures030220 oncology & carcinogenesisScience & Technology - Other TopicsErfðarannsóknirHuman:Informàtica::Aplicacions de la informàtica::Bioinformàtica [Àrees temàtiques de la UPC]EvolutionRNA SplicingGenomicsArticleEvolution MolecularStructural variationRC025403 medical and health sciencesSDG 3 - Good Health and Well-beingGeneticgenomicsSYSTEMATIC ANALYSISGeneticsGenomics--Databases.HumansGenetic TestingMolecular BiologySIGNATURESWhole genome sequencing1000 MultidisciplinaryChromothripsisScience & TechnologyRC0254 Neoplasms. Tumors. Oncology (including Cancer)Information DisseminationResearchInstitutes_Networks_Beacons/mcrcPreventionBiology and Life SciencesMolecularOncogenesCloud Computingmedicine.diseaseGenòmicaCompute cloudsMutation570 Life sciences; biologyCOMPREHENSIVE CHARACTERIZATIONGenèticaWhole Genome Sequencing--methodsBackground informationDNA Mutational Analysis ; Evolution ; Genetic / genetics ; Genome ; Genomics ; Germ-Line Mutation / genetics ; High-Throughput Nucleotide Sequencing ; Human / genetics ; Humans ; ICGC/TCGA Pan-Cancer Analysis of Whole Genomes ConsortiumMedizinGenomeWhole-genomeGenome mappingNeoplasms2.1 Biological and endogenous factorsPromoter Regions GeneticCàncer -- Aspectes genèticsTelomeraseGeneticsWomen's cancers Radboud Institute for Molecular Life Sciences [Radboudumc 17]MultidisciplinaryChromothripsisGenomeManchester Cancer Research Centregenomics cancer profiling3rd-DAS10124 Institute of Molecular Life SciencesWomen's cancers Radboud Institute for Health Sciences [Radboudumc 17]Multidisciplinary SciencesParallel sequencingICGC/TCGA Pan-Cancer Analysis of Whole Genomes ConsortiumFemaleprofilingMedical GeneticsEngineering sciences. TechnologyBiotechnologyGeneral Science & TechnologyThe Cancer Genome Atlas610 Medicine & healthComputational biologyQH426 GeneticsBiologyConsortium of the International Cancer Genome ConsortiumPromoter RegionsGermline mutationPan-cancer analysisKrabbameinsrannsóknirmedicinecancerddc:610QH426Germ-Line MutationMedicinsk genetikKrabbamein030304 developmental biologyCell ProliferationLANDSCAPEGenome Humancomprehensive characterizationPan-cancer analysis of whole genomesPoint mutationHuman GenomeCancerReproducibility of ResultsSOMATIC MUTATIONSEVOLUTIONCancer sequencing Chromothripsis telomereDNA-DAMAGEMutagenesisPATTERNS3111 BiomedicineCHARACTERIZATION
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A symmetrization result for Monge–Ampère type equations

2007

In this paper we prove some comparison results for Monge–Ampere type equations in dimension two. We also consider the case of eigenfunctions and we derive a kind of “reverse” inequalities. (© 2007 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim)

Mathematics::Complex VariablesGeneral MathematicsMathematical analysisComparison resultsMonge-Ampère equationEigenfunctionType (model theory)Monge-Ampère equationsDimension (vector space)Settore MAT/05 - Analisi Matematicaeigenvalue problemrearrangementsSymmetrizationAmpereEigenvalue problemsMathematicsMathematische Nachrichten
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On the reaction of some 5-polyfluoroaryl-1,2,4-oxadiazoles with methylhydrazine: synthesis of fluorinated indazoles

2009

The reaction of 5-polyfluoroaryl-1,2,4-oxadiazoles with methylhydrazine has been studied and the synthesis of fluorinated N-methylindazoles has been realized. Rearrangement reactions showed predominantly formation of N(1)-methylindazole regioisomers. Starting compounds were preliminarily functionalized at the polyfluoroaryl moiety through fluorine displacement with nucleophiles (methanol, methylamine, dimethylamine), allowing the obtainment of target indazoles substituted at the C(6) position.

MethylhydrazineIndazoleMethylamineOrganic ChemistrySettore CHIM/06 - Chimica OrganicaBiochemistryMedicinal chemistryChemical synthesischemistry.chemical_compoundchemistryNucleophileDrug DiscoveryStructural isomerMoietyOrganic chemistryDimethylamine124-Oxadiazole Indazole Rearrangements Fluorinated heterocycles
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Phylogenomics of species from four genera of New World monkeys by flow sorting and reciprocal chromosome painting

2007

Abstract Background The taxonomic and phylogenetic relationships of New World monkeys (Platyrrhini) are difficult to distinguish on the basis of morphology and because diagnostic fossils are rare. Recently, molecular data have led to a radical revision of the traditional taxonomy and phylogeny of these primates. Here we examine new hypotheses of platyrrhine evolutionary relationships by reciprocal chromosome painting after chromosome flow sorting of species belonging to four genera of platyrrhines included in the Cebidae family: Callithrix argentata (silvered-marmoset), Cebuella pygmaea (pygmy marmoset), Callimico goeldii (Goeldi's marmoset) and Saimiri sciureus (squirrel monkey). This is t…

PLATYRRHINE MONKEYSPRIMATE PHYLOGENYMOLECULAR PHYLOGENYMITOCHONDRIAL-DNAPygmy marmosetZOO-FISHZoologyPlatyrrhiniDIVERGENCE TIMESChromosome PaintingEvolution MolecularANCESTRAL KARYOTYPEbiology.animalCebidaeAnimalsChromosomes HumanHumansPhylogenyEcology Evolution Behavior and SystematicsChromosome 13biologyCallimico goeldiiResearchSquirrel monkeySaimiri sciureusMarmosetIN-SITU HYBRIDIZATIONFlow Cytometrybiology.organism_classificationEVOLUTIONPlatyrrhiniEvolutionary biologyKaryotypingGENOMIC REARRANGEMENTSphylogenomics Primates molecular cytogeneticsBMC Evolutionary Biology
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Fluorinated Heterocyclic Compounds. A Photochemical Approach to a Synthesis of Polyfluoroaryl-1,2,4-triazoles.

2005

The reaction of some fluorinated 1,2,4-oxadiazoles in the presence of methylamine or propylamine has been investigated. The irradiation in methanol or acetonitrile leads with acceptable yields to the corresponding fluorinated 1- methyl- or 1-propyl-1,2,4-triazole.

PharmacologyFLUORO HETEROCYCLESMethylamineOrganic ChemistryQUINAZOLIN-4-ONES124-Triazole124-OXADIAZOLESPropylamineSettore CHIM/06 - Chimica OrganicaGeneral MedicineEXPEDIENT ROUTEPhotochemistryMedicinal chemistryAnalytical Chemistrychemistry.chemical_compound124-TRIAZOLESchemistryTriazole derivativesOrganic chemistry5-MEMBERED HETEROCYCLESIrradiationMethanolAcetonitrilePHOTOINDUCED MOLECULAR-REARRANGEMENTSChemInform
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