Search results for "SPT"

showing 10 items of 79 documents

Phylogeny and origin of Jurassic irregular echinoids (Echinodermata: Echinoidea).

2006

27 pages; International audience; A phylogenetic analysis of Jurassic irregular echinoids is realized to explore the origin and early evolution of this important subset of echinoids. The phylogeny is based on 39 characters and considers data from apical system architecture, the corona including tuberculation and spines, Aristotle's lantern, and general test shape. Results corroborate the monophyly of Irregularia, and clarify the phylogenetic interrelationships existing between the main groups of irregular echinoids. Specializations of the Aristotle's lantern, spines, tubercles and phyllodes constitute the apomorphies for different taxa, as for the whole of Irregularia. The phylogenetic sign…

SynapomorphyParaphylySystematicsbiologyAtelostomataZoologyGeologyContext (language use)Echinoidea^hylogenyPhyloCodeJurassic[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics Phylogenetics and taxonomybiology.organism_classificationMonophylyTaxonIrregularia[SDU.STU.PG]Sciences of the Universe [physics]/Earth Sciences/Paleontologysystematics[ SDV.BID.SPT ] Life Sciences [q-bio]/Biodiversity/Systematics Phylogenetics and taxonomy[ SDU.STU.PG ] Sciences of the Universe [physics]/Earth Sciences/Paleontology
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New records of phytoseiid mites from Italy, with description of a new species and a redescription of other two (Parasitiformes, Phytoseiidae)

2020

The Italian phytoseiid fauna consists of 91 valid species. Eighteen of them were described as new species from materials collected in various Italian localities. In the present paper we report nine new records from the Italian fauna and describe the new species, Neoseiulus mediterraneus belonging to the subfamily Amblyseiinae. Complementary descriptions of two rare species, namely: Typhlodromus (Anthoseius) singularis and Typhlodromus (Typhlodromus) knisleyi, were also added.

0106 biological sciencesPhytoseiidaeArthropodaFaunaAacriformes010607 zoologyZoologyAcariformes[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics Phylogenetics and taxonomy01 natural sciencesdescriptionsArachnidaAnimaliaAcariPhytoseiidaeAcariTaxonomynew speciesDescriptions Italy Mesostigmata New species PhytoseiidaebiologyParasitiformesBiodiversitybiology.organism_classificationAcariformes[SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate Zoology010602 entomologySettore AGR/11 - Entomologia Generale E ApplicataItalyTyphlodromusInsect ScienceMesostigmataMesostigmataNeoseiulus
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Comprehensive analysis of interacting proteins and genome-wide location studies of the Sas3-dependent NuA3 histone acetyltransferase complex

2014

Highlights • We characterise Sas3p and Gcn5p active HAT complexes in WT and deleted TAP-strains. • We confirm that Pdp3p interacts with NuA3, histones and chromatin regulators. • Pdp3p MS-analysis reveals its phosphorylation, ubiquitination and methylation. • Sas3p can substitute Gcn5p in acetylation of histone H3K14 but not of H3K9. • Genome-wide profiling of Sas3p supports its involvement in transcriptional elongation.

nt nucleotidePTM post-translational modificationNuA3 histone acetyltransferase complexChIP-on-chip chromatin immunoprecipitation with genome-wide location arraysBiologyArticleGeneral Biochemistry Genetics and Molecular BiologyChromatin remodelingHistonesHistone H3NuA3 nucleosomal acetyltransferase of histone H3Histone H1Histone H2APdp3TAP–MS strategyHistone codelcsh:QH301-705.5TAP tandem affinity purificationGeneticsRNAPII RNA polymerase IIHistone acetyltransferaseWCE whole cell extractSAGA Spt-Ada-Gcn acetyltransferaseWT wild-typeChromatinYeastCell biologyChIP-on-chiplcsh:Biology (General)Histone methyltransferasebiology.proteinHAT histone acetyltransferaseTSS transcription start siteFEBS Open Bio
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Modelling Photoionisation in Isocytosine: Potential Formation of Longer‐Lived Excited State Cations in its Keto Form

2021

Abstract Studying the effects of UV and VUV radiation on non‐canonical DNA/RNA nucleobases allows us to compare how they release excess energy following absorption with respect to their canonical counterparts. This has attracted much research attention in recent years because of its likely influence on the origin of our genetic lexicon in prebiotic times. Here we present a CASSCF and XMS‐CASPT2 theoretical study of the photoionisation of non‐canonical pyrimidine nucleobase isocytosine in both its keto and enol tautomeric forms. We analyse their lowest energy cationic excited states including 2π+ , 2nO+ and 2nN+ and compare these to the corresponding electronic states in cytosine. Investigat…

Models MolecularCASPT2Ultraviolet RaysADNPhysics Atomic Molecular & ChemicalRELAXATION DYNAMICSCASSCFArticleCytosineMOLECULAR WAVE-FUNCTIONSCationsIMPLEMENTATION0307 Theoretical and Computational ChemistryPhysical and Theoretical Chemistry0306 Physical Chemistry (incl. Structural)Radiació ionitzantScience & TechnologyChemical PhysicsMolecular StructureChemistry PhysicalConical IntersectionsPhysicsSPECTROSCOPIC FINGERPRINTSDNAArticlesKetonesPhotochemical ProcessesURACILAtomic and Molecular Physics and OpticsChemistryPhotostability2ND-ORDER PERTURBATION-THEORYPhotoionisationPhysical SciencesANO BASIS-SETSSIMULATION0202 Atomic Molecular Nuclear Particle and Plasma PhysicsCASSCF/CASPT2RNAELECTRON CORRELATIONDNA/RNAChemPhysChem
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Radiation damage in the DNA/RNA nucleobases: A theoretical study

2015

La comprensión de los mecanismos de daño en el DNA/RNA inducidos por luz UV y en condiciones de estrés reductor fue el principal objetivo de esta tesis. Para ello se usaron en monómeros y dímeros el método espacio activo complete campo autoconsistente / espacio activo completo teoría de perturbaciones hasta segundo orden de espacio activo complete(CASSCF/CASPT2) y estrategias computacionales precisas de determinación del camino de reacción. En cuanto al daño inducido por la luz UV en el ADN/ARN, hemos estudiado la fotoproducción de dímeros de pirimidina ciclobutano (CPDs) en nucleobases apiladas a través de las vías singlet y triplete. Estos mecanismos de fotodimerización son iniciados por …

fotoquímica teóricadaño en el ADN/ARNCASSCF/CASPT2química computacionalquímica cuánticaquímica física
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New records of Asteraceae for the non-native flora of Tunisia and north Africa with some nomenclatural remarks

2022

International audience; Sixteen new Asteraceae are added to the non-indigenous flora of Tunisia. Six of them (Dimorphotheca ecklonis, Gaillardia pulchella, Gazania linearis var. linearis, Guizotia abyssinica, Rudbeckia triloba and Tithonia diversifolia) are also new for the flora of North Africa. Chrysanthemum morifolium is here first reported for the Mediterranean Basin. Seven genera (Argyranthemum, Bidens, Dimorphotheca, Gaillardia, Guizotia, Rudbeckia and Tithonia) are recorded for the first time for the vascular flora of Tunisia. Most of these species escaped from gardens and pots and became casual along roadsides and/or disturbed areas after cypsela dispersion (except for Chrysanthemum…

AsteroideaeCompositaeEcologySettore BIO/02 - Botanica SistematicaPlant Science[SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/Botanicsalien flora[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics Phylogenetics and taxonomynaturalizationAlien flora[SDV.EE.ECO]Life Sciences [q-bio]/Ecology environment/EcosystemsSettore BIO/03 - Botanica Ambientale E Applicatatypification.Typification.Typification[SDE.BE]Environmental Sciences/Biodiversity and EcologyEcology Evolution Behavior and SystematicsCichorioideaeNaturalization
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Analysis of a database to predict the result of allergy testing in vivo in patients with chronic nasal symptoms.

2014

Background This article uses the logistic regression model for diagnostic decision making in patients with chronic nasal symptoms. We studied the ability of the logistic regression model, obtained by the evaluation of a database, to detect patients with positive allergy skin-prick test (SPT) and patients with negative SPT. The model developed was validated using the data set obtained from another medical institution. Methods The analysis was performed using a database obtained from a questionnaire administered to the patients with nasal symptoms containing personal data, clinical data, and results of allergy testing (SPT). All variables found to be significantly different between patients w…

skin-prick test (SPT)AdultMalePediatricsmedicine.medical_specialtySettore MED/09 - Medicina InternaDatabases FactualAllergy testingPrimary careLogistic regressioncomputer.software_genreSettore SECS-S/06 -Metodi Mat. dell'Economia e d. Scienze Attuariali e Finanz.Immunology and AllergyMedicineHumansIn patientreceiver operating characteristic curveSkin Testsnasal symptomReceiver operating characteristicDatabasebusiness.industryquestionnaireArea under the curveGeneral MedicineStepwise regressionMiddle Agedlogistic regression modelRhinitis AllergicrhinitiLogistic ModelsOtorhinolaryngologyChronic DiseaseFemalebusinessDiagnostic decision makingcomputerNasal symptomsAmerican journal of rhinologyallergy
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Asteroceras langi Dommergues & Meister, un hommage au Professeur J. Lang.

2007

4 pages; Une espèce d'ammonite du Sinémurien supérieur du Maroc, Asteroceras langi Dommergues & Meister, dédiée au professeur J. Lang est présentée à nouveau à l'occasion de ce mémoire jubilé.

MESH : Jurassique inférieur[SDV.BID.SPT] Life Sciences [q-bio]/Biodiversity/Systematics Phylogenetics and taxonomyMESH : AsteroceratinaeMESH : Ammonite[SDU.STU.PG] Sciences of the Universe [physics]/Earth Sciences/PaleontologyMESH : Maroc[ SDV.BID.SPT ] Life Sciences [q-bio]/Biodiversity/Systematics Phylogenetics and taxonomy[ SDU.STU.PG ] Sciences of the Universe [physics]/Earth Sciences/Paleontology
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Molecular markers for systematic identification and population genetics of the invasive Ponto-Caspian freshwater gammarid Dikerogammarus villosus (Cr…

2006

The Ponto-Caspian amphipod, Dikerogammarus villosus, is an invasive species of many European rivers. First, we show that size difference of nrDNA ITS1 allows discriminating D. villosus from Dikerogammarus bispinosus, a closely related but morphologically hardly distinguishable species. Second, we present two types of polymorphic markers for D. villosus, three microsatellites and two single nucleotide polymorphisms (SNPs) of mtDNA COI gene, which were scored by polymerase chain reaction-single strand conformational polymorphism (PCR-SSCP). These markers will be very useful in studying population genetics of D. villosus.

GeneticsMitochondrial DNAAmphipodaEcologybiologyZoologyPopulation geneticsDikerogammarus villosusSingle-nucleotide polymorphismSingle-strand conformation polymorphismbiology.organism_classificationBiochemistrynrDNA-ITS1General Biochemistry Genetics and Molecular BiologymicrosatellitesSSCP[ SDV.EE.ECO ] Life Sciences [q-bio]/Ecology environment/Ecosystemsinvasive speciesCOI[ SDV.GEN.GPO ] Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE]Genetic markerMicrosatelliteComputingMilieux_MISCELLANEOUS[ SDV.BID.SPT ] Life Sciences [q-bio]/Biodiversity/Systematics Phylogenetics and taxonomy
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Cryptic diversity within three South American whip spider species (Arachnida, Amblypygi)

2020

4 pages; International audience; Cryptic diversity (CD), the presence of highly divergent phylogenetic lineages within closed morphological species, has been documented for many taxa. Great arachnid orders such as Araneae or Scorpiones are well studied and many cases of CD have been described therein; to date, however, related research on smaller arachnid orders, such as whip spiders (Amblypygi), remains lacking. In the current study, we investigated CD based on cytochrome oxidase 1 (COI) in three nominal species of the genus Heterophrynus (H. alces, H. batesii, and H. longicornis), represented by 65 specimens. The sequences were compared using three different methods. All three species sho…

0106 biological sciences0301 basic medicineArachnidZoology[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics Phylogenetics and taxonomySpatial distribution010603 evolutionary biology01 natural sciencesHidden diversity03 medical and health sciencesAmblypygiSpecies SpecificityGenuslcsh:ZoologyAnimalsDNA barcodinglcsh:QL1-991Whip (tree)Letters to the EditorEcology Evolution Behavior and SystematicsPhylogenySpiderEcologyPhylogenetic treebiologyAmazon basin forestGenetic VariationSpidersDNAbiology.organism_classification030104 developmental biologyTaxonAnimal Science and Zoology[SDE.BE]Environmental Sciences/Biodiversity and EcologyZoological Research
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