Search results for "Scheme"
showing 10 items of 527 documents
Implementation of non-local boundary layer schemes in the Regional Atmospheric Modeling System and its impact on simulated mesoscale circulations
2016
This paper proposes the implementation of different non-local Planetary Boundary Layer schemes within the Regional Atmospheric Modeling System (RAMS) model. The two selected PBL parameterizations are the Medium-Range Forecast (MRF) PBL and its updated version, known as the Yonsei University (YSU) PBL. YSU is a first-order scheme that uses non-local eddy diffusivity coefficients to compute turbulent fluxes. It is based on the MRF, and improves it with an explicit treatment of the entrainment. With the aim of evaluating the RAMS results for these PBL parameterizations, a series of numerical simulations have been performed and contrasted with the results obtained using the Mellor and Yamada (M…
Approximation of fixed points of multifunctions in partial metric spaces
2013
Recently, Reich and Zaslavski [S. Reich and A.J. Zaslavski, Convergence of Inexact Iterative Schemes for Nonexpansive Set-Valued Mappings, Fixed Point Theory Appl. 2010 (2010), Article ID 518243, 10pages] have studied a new inexact iterative scheme for fixed points ofcontractive multifunctions. In this paper, using the partial Hausdorffmetric introduced by Aydi et al., we prove an analogous to a resultof Reich and Zaslavski for contractive multifunctions in the setting ofpartial metric spaces. An example is given to illustrate our result. 
A multilocus sequence analysis scheme for characterization of Flavobacterium columnare isolates
2015
Background Columnaris disease caused by Flavobacterium columnare is a serious problem in aquaculture, annually causing large economic losses around the world. Despite considerable research, the molecular epidemiology of F. columnare remains poorly understood. Methods We investigated the population structure and spatiotemporal changes in the genetic diversity of F. columnare population in Finland by using a multilocus sequence typing (MLST) and analysis (MLSA) based on DNA sequence variation within six housekeeping genes. A total of 83 strains of F. columnare were collected from eight different areas located across the country between 2003 and 2012. Results Partial sequencing of six housekee…
Joint LMMSE equalizer for HSDPA in full-rate space time transmit diversity schemes
2005
This contribution presents a joint linear minimum mean square error (LMMSE) equalizer for full-rate space-time transmit diversity multi-code schemes based on W-CDMA, featuring two and four transmit antennas. Specifically, high-rate, high load systems are targeted, in order to analyze the high speed downlink packet access (HSDPA) of 3GPP Release 6. We derive an equivalent transmission scheme to equalize the received sufficient statistic in a single stage. To reduce the effects of multipath and multiuser interference, and to provide spatial and frequency diversity at the receiver, an LMMSE equalizer is employed. Computer simulations confirm that the proposed schemes achieve robust performance…
Effects of different simplified milk recording methods on genetic evaluation with Test-Day animal model
2007
The aims of the present study were to compare estimated breeding values (EBV) for milk yield using different testing schemes with a test-day animal model and to evaluate the effect of different testing schemes on the ranking of top sheep. Alternative recording schemes that use less information than that currently obtained with a monthly test-day schedule were employed to estimate breeding values. A random regression animal mixed model that used a spline function of days in milk was fitted. EBVs obtained with alternative recording schemes showed different degrees of Spearman correlation with EBVs obtained using the monthly recording scheme. These correlations ranged from 0.77 to 0.92. A redu…
Solid state NMR analysis of peptides in membranes: Influence of dynamics and labeling scheme.
2010
The functional state of a membrane-active peptide is often defined by its conformation, molecular orientation, and its oligomeric state in the lipid bilayer. These "static" structural properties can be routinely studied by solid state NMR using isotope-labeled peptides. In the highly dynamic environment of a liquid crystalline biomembrane, however, the whole-body fluctuations of a peptide are also of paramount importance, although difficult to address and most often ignored. Yet it turns out that disregarding such motional averaging in calculating the molecular alignment from orientational NMR-constraints may give a misleading, if not false picture of the system. Here, we demonstrate that t…
QM/MM calculations of kinetic isotope effects in the chorismate mutase active site.
2003
Kinetic isotope effects have been computed for the Claisen rearrangement of chorismate to prephenate in aqueous solution and in the active site of chorismate mutase from B. subtilus. These included primary 13C and 18O and secondary 3H effects for substitutions at the bond-making and bond-breaking positions. The initial structures of the putative stationary points on the potential energy surface, required for the calculations of isotope effects using the CAMVIB/CAMISO programs, have been selected from hybrid QM/MM molecular dynamical simulations using the DYNAMO program. Refinement of the reactant complex and transition-state structures has been carried out by means of AM1/CHARMM24/TIP3P cal…
Modeling of the role of conformational dynamics in kinetics of the antigen-antibody interaction in heterogeneous phase.
2012
[EN] A novel approach that may potentially be used to study biomolecular interactions including the simultaneous determination of structural and kinetic binding parameters is described in this Article for the first time. It allows a rigid distinction between the possible reaction mechanisms of biomolecular recognition, induced fit and conformational selection. The relative importance of the two pathways is determined not by comparing rate constants but the structural aspects of the interaction instead. So the exact location of antigen molecules with respect to the capture antibody is depicted experimentally, avoiding the use of X-ray crystallography. The proposed pattern is applied to study…
Tower sets and other configurations with the Cohen-Macaulay property
2014
Abstract Some well-known arithmetically Cohen–Macaulay configurations of linear varieties in P r as k-configurations, partial intersections and star configurations are generalized by introducing tower schemes. Tower schemes are reduced schemes that are a finite union of linear varieties whose support set is a suitable finite subset of Z + c called tower set. We prove that the tower schemes are arithmetically Cohen–Macaulay and we compute their Hilbert function in terms of their support. Afterwards, since even in codimension 2 not every arithmetically Cohen–Macaulay squarefree monomial ideal is the ideal of a tower scheme, we slightly extend this notion by defining generalized tower schemes …
A secret sharing scheme for anonymous DNS queries
2013
Since its adoption in the early 90's, several privacy concerns have emerged about the Domain Name System (DNS). By collecting the DNS queries performed by each user, it is possible to characterize habits, interests and other sensitive data of the users. Usually, users resolve their {\em url} requests by querying the DSN server belonging to their Internet Service Provider (ISP) and therefore they assume they can trust it. However, different DNS servers can be used, by revealing sensitive data to a partially untrusted entity that can collect and sell this data for several purposes (target advertising, user profiling, etc.). In this paper we address the possibility to integrate tools in the cu…