Search results for "Simulation."
showing 10 items of 4779 documents
An easy-to-use model for O2 supply to red muscle. Validity of assumptions, sensitivity to errors in data
1995
An easy-to-use capillary cylinder model of O2 supply to muscle is presented that considers all those factors that are known to be most important for realistic results: (1) red blood cell (RBC) O2 unloading along the capillary, (2) effects of the particulate nature of blood, (3) free and hemoglobin-facilitated O2 diffusion and reaction kinetics inside RBCs, (4) free and myoglobin-facilitated O2 diffusion inside the muscle cell, and (5) carrier-free region separating RBC and tissue. In a first approach, a highly simplified yet reasonably accurate treatment of the complex three-dimensional oxygen diffusion field in and next to capillaries is employed. As an alternative, a more realistic descri…
PIECEWISE SMOOTH REVERSIBLE DYNAMICAL SYSTEMS AT A TWO-FOLD SINGULARITY
2012
This paper focuses on the existence of closed orbits around a two-fold singularity of 3D discontinuous systems of the Filippov type in the presence of symmetries.
Parameter estimation: an advanced simulation tool in biomedicine
1990
Parameter estimation as an advanced tool in biomedicine have become extremely important in the study of biological systems. With increasing physiological knowledge and more efficient computers, modelling, simulation, and estimation have grown during the past 20 years to one of the most powerful tools of biomedical system analysis. Moreover modelling, simulation and estimation is of growing importance for determination of non-measurable parameters and state variables of biomedical systems as well as for case studies research of biomedical processes, which have been developed by physicians and system engineers and have also been widely accepted by biomedical scientists. These models already d…
Mathematical modeling and parameters estimation of a car crash using data-based regressive model approach
2011
Author's version of an article in the journal: Applied Mathematical Modelling. Also available from the publisher at: http://dx.doi.org/10.1016/j.apm.2011.04.024 n this paper we present the application of regressive models to simulation of car-to-pole impacts. Three models were investigated: RARMAX, ARMAX and AR. Their suitability to estimate physical system parameters as well as to reproduce car kinematics was examined. It was found out that they not only estimate the one quantity which was used for their creation (car acceleration) but also describe the car's acceleration, velocity and crush. A virtual experiment was performed to obtain another set of data for use in further research. An A…
Ethernet FSO Communications Link Performance Study Under a Controlled Fog Environment
2012
In this letter the performance of a free space optical (FSO) communication link in the presence of fog is experimentally investigated in an indoor environment. A dedicated indoor atmospheric chamber, replicating the outdoor environment, is being used to evaluate the FSO link performance under the fog condition. Theoretical analysis supported by the experimental evaluation has been carried out for the intensity modulation/direct detection on-off keying non-return-to-zero (OOK-NRZ), OOK return-to-zero (OOK-RZ) and four pulse position modulation (4-PPM) modulation formats at the Ethernet baseline data-rate. The results shown indicate that the 4-PPM signalling scheme is the most robust to the f…
Commentary on the MID3 Good Practices Paper
2017
Contains fulltext : 178217.pdf (Publisher’s version ) (Open Access) During the last 10 years the European Medicines Agency (EMA) organized a number of workshops on modeling and simulation, working towards greater integration of modeling and simulation (M&S) in the development and regulatory assessment of medicines. In the 2011 EMA - European Federation of Pharmaceutical Industries and Associations (EFPIA) Workshop on Modelling and Simulation, European regulators agreed to the necessity to build expertise to be able to review M&S data provided by companies in their dossier. This led to the establishment of the EMA Modelling and Simulation Working Group (MSWG). Also, there was agreement reach…
On the power and the systematic biases of the detection of chromosomal inversions by paired-end genome sequencing
2013
One of the most used techniques to study structural variation at a genome level is paired-end mapping (PEM). PEM has the advantage of being able to detect balanced events, such as inversions and translocations. However, inversions are still quite difficult to predict reliably, especially from high-throughput sequencing data. We simulated realistic PEM experiments with different combinations of read and library fragment lengths, including sequencing errors and meaningful base-qualities, to quantify and track down the origin of false positives and negatives along sequencing, mapping, and downstream analysis. We show that PEM is very appropriate to detect a wide range of inversions, even with …
Why are viral genomes so fragile? The bottleneck hypothesis
2021
If they undergo new mutations at each replication cycle, why are RNA viral genomes so fragile, with most mutations being either strongly deleterious or lethal? Here we provide theoretical and numerical evidence for the hypothesis that genetic fragility is partly an evolutionary response to the multiple population bottlenecks experienced by viral populations at various stages of their life cycles. Modelling within-host viral populations as multi-type branching processes, we show that mutational fragility lowers the rate at which Muller’s ratchet clicks and increases the survival probability through multiple bottlenecks. In the context of a susceptible-exposed-infectious-recovered epidemiolog…
PACo: a novel procrustes application to cophylogenetic analysis.
2013
We present Procrustean Approach to Cophylogeny (PACo), a novel statistical tool to test for congruence between phylogenetic trees, or between phylogenetic distance matrices of associated taxa. Unlike previous tests, PACo evaluates the dependence of one phylogeny upon the other. This makes it especially appropriate to test the classical coevolutionary model that assumes that parasites that spend part of their life in or on their hosts track the phylogeny of their hosts. The new method does not require fully resolved phylogenies and allows for multiple host-parasite associations. PACo produces a Procrustes superimposition plot enabling a graphical assessment of the fit of the parasite phyloge…
Forward and backward diffusion approximations for haploid exchangeable population models
2001
Abstract The class of haploid population models with non-overlapping generations and fixed population size N is considered such that the family sizes ν1,…,νN within a generation are exchangeable random variables. A criterion for weak convergence in the Skorohod sense is established for a properly time- and space-scaled process counting the number of descendants forward in time. The generator A of the limit process X is constructed using the joint moments of the offspring variables ν1,…,νN. In particular, the Wright–Fisher diffusion with generator Af(x)= 1 2 x(1−x)f″(x) appears in the limit as the population size N tends to infinity if and only if the condition lim N→∞ E((ν 1 −1) 3 )/(N Var …