Search results for "Simulation"

showing 10 items of 5095 documents

Escaping the evolutionary trap: Can size-related contest advantage compensate for juvenile mortality disadvantage when parasitoids develop in unnatur…

2021

Abstract The quality of hosts for a parasitoid wasp may be influenced by attributes such as host size or species, with high quality for successful development usually coincident with high quality for larger offspring. This is not always the case: for the Scelionid wasp Trissolcus basalis, oviposition in eggs of the Brown Marmorated Stink Bug, Halyomorpha halys, rather than of the normal host, the Southern Green Stink Bug, Nezara viridula, leads to lower offspring survival, but survivors can be unusually large. Adult female T. basalis engage in contests for host access. As larger contestants are typically favoured in contests between parasitoids, the larger size of surviving offspring may co…

0106 biological sciencesStatistics and ProbabilityAvian clutch sizeHost specieGreen stink bugWaspsZoology010603 evolutionary biology01 natural sciencesReproductive valueGeneral Biochemistry Genetics and Molecular BiologyParasitoid waspHeteropteraAnimalsBrown marmorated stink bugEvolutionarily stable strategyGeneral Immunology and MicrobiologybiologySize advantageHost (biology)AnimalApplied MathematicsReproductionfungiGeneral MedicineTrissolcus basalibiology.organism_classificationBiological EvolutionEurope010602 entomologyHalyomorpha halyEvolutionary trapNezara viridulaModeling and SimulationOwnership advantageBrown Marmorated Stink BugFemaleReproductive valueGeneral Agricultural and Biological SciencesJournal of theoretical biology
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Dynamic complexities in host-parasitoid interaction

1999

In the 1970s ecological research detected chaos and other forms of complex dynamics in simple population dynamics models, initiating a new research tradition in ecology. However, the investigations of complex population dynamics have mainly concentrated on single populations and not on higher dimensional ecological systems. Here we report a detailed study of the complicated dynamics occurring in a basic discrete-time model of host-parasitoid interaction. The complexities include (a) non-unique dynamics, meaning that several attractors coexist, (b) basins of attraction (defined as the set of the initial conditions leading to a certain type of an attractor) with fractal properties (pattern of…

0106 biological sciencesStatistics and ProbabilityEcology (disciplines)PopulationChaoticBiologyBifurcation diagram010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular Biologylaw.invention03 medical and health sciencesFractalControl theorylawIntermittencyAttractorQuantitative Biology::Populations and EvolutionStatistical physicseducation030304 developmental biology0303 health scienceseducation.field_of_studyGeneral Immunology and MicrobiologyApplied MathematicsGeneral MedicineComplex dynamicsModeling and SimulationGeneral Agricultural and Biological SciencesJournal of theoretical biology
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Environmental Variability and Semelparity vs. Iteroparity as Life Histories

2002

Research on the evolution of life histories addresses the topic of fitness trade-offs between semelparity (reproducing once in a lifetime) and iteroparity (repeated reproductive bouts per lifetime). Bulmer (1994) derived the relationship v+P(A)<1 (P(A) is the adult survival;vb(S) and b(S) are the offspring numbers for iteroparous and semelparous breeding strategies, respectively), under which a resident semelparous population cannot be invaded by an iteroparous mutant when the underlying population dynamics are stable. We took Bulmer's population dynamics, and added noise in juvenile and adult survival and in offspring numbers. Long-term coexistence of the two strategies is possible in much…

0106 biological sciencesStatistics and ProbabilityOffspringPopulation DynamicsPopulationBiologyModels Biological010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyAnimalsJuvenileeducationSurvival rateEcosystemSemelparity and iteroparityeducation.field_of_studyGeneral Immunology and MicrobiologyReproductionApplied MathematicsGeneral MedicineBiological evolutionBiological EvolutionSurvival Rate010601 ecologyParityModeling and SimulationGeneral Agricultural and Biological SciencesDemographyJournal of Theoretical Biology
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Effects of patch number and dispersal patterns on population dynamics and synchrony.

2000

In this paper, we examine the effects of patch number and different dispersal patterns on dynamics of local populations and on the level of synchrony between them. Local population renewal is governed by the Ricker model and we also consider asymmetrical dispersal as well as the presence of environmental heterogeneity. Our results show that both population dynamics and the level of synchrony differ markedly between two and a larger number of local populations. For two patches different dispersal rules give very versatile dynamics. However, for a larger number of local populations the dynamics are similar irrespective of the dispersal rule. For example, for the parameter values yielding stab…

0106 biological sciencesStatistics and ProbabilityPopulationPopulation DynamicsBiology010603 evolutionary biology01 natural sciencesPopulation densityModels BiologicalGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesQuantitative Biology::Populations and EvolutionAnimalsLocal populationPopulation dynamicseducation030304 developmental biologyPopulation Density0303 health scienceseducation.field_of_studyGeneral Immunology and MicrobiologyEcologyApplied MathematicsHigh intensityDynamics (mechanics)General MedicineRicker modelModeling and SimulationBiological dispersalGeneral Agricultural and Biological SciencesJournal of theoretical biology
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Seed Bank in Annuals: Competition Between Banker and Non-banker Morphs

2002

Seed bank is a plant life history strategy against the unpredictability of the biotic and the abiotic environment. We simulated competition between a seed banking and a non-banking morph of an annual plant. A constant fraction of the banker morph seeds was allocated to the seed bank, where they had a constant mortality and germination rate. All surviving seeds of the non-banker morph germinated in the next generation. The seedlings of both morphs experienced similar density-dependent mortality. Whether one of the morphs wins or the morphs coexist was evaluated from parameter space plots and statistically with logistic regression analysis. All parameters of the model had a significant, nonli…

0106 biological sciencesStatistics and Probabilitygenetic structuresmedia_common.quotation_subjectComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISIONGerminationModel parametersBiologyModels Biological010603 evolutionary biology01 natural sciencesGeneralLiterature_MISCELLANEOUSGeneral Biochemistry Genetics and Molecular BiologyPlant lifeCompetition (biology)BotanyEcosystemBiological sciencesEcosystemreproductive and urinary physiologyComputingMethodologies_COMPUTERGRAPHICSmedia_commonAbiotic componentGeneral Immunology and MicrobiologyReproductionApplied MathematicsfungiGeneral Medicine15. Life on landhumanitiesLogistic ModelsAgronomyGerminationModeling and SimulationSeedsAnnual plantGeneral Agricultural and Biological Sciencespsychological phenomena and processes010606 plant biology & botanyJournal of Theoretical Biology
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Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium

2010

Abstract Background Synechocystis sp. PCC6803 is a cyanobacterium considered as a candidate photo-biological production platform - an attractive cell factory capable of using CO2 and light as carbon and energy source, respectively. In order to enable efficient use of metabolic potential of Synechocystis sp. PCC6803, it is of importance to develop tools for uncovering stoichiometric and regulatory principles in the Synechocystis metabolic network. Results We report the most comprehensive metabolic model of Synechocystis sp. PCC6803 available, iSyn669, which includes 882 reactions, associated with 669 genes, and 790 metabolites. The model includes a detailed biomass equation which encompasses…

0106 biological sciencesSystems biologyIn silicoMetabolic networkComputational biologyBiologyModels Biological01 natural sciencesMetabolic engineeringGene Knockout Techniques03 medical and health sciencesStructural BiologyModelling and Simulation010608 biotechnologyBotanyBiomassPhotosynthesislcsh:QH301-705.5Molecular Biology030304 developmental biologyAutotrophic Processes0303 health sciencesGene Expression ProfilingApplied MathematicsSynechocystisSynechocystisGenomicsDarknessbiology.organism_classificationComputer Science ApplicationsFlux balance analysislcsh:Biology (General)Genes BacterialAutotrophic ProcessesModeling and SimulationEnergy sourceGenome BacterialResearch ArticleBMC Systems Biology
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Reducing waste and ecological impacts through a sustainable and efficient management of perishable food based on the Monte Carlo simulation

2019

Abstract In today’s competitive global market it is mandatory to improve warehousing operations integrating economic, environmental and social aspects. The recent advancement in monitoring technologies can greatly improve the performance of the food supply chain reducing product loss. In particular, in the perishable food supply chain, initially inventory operations are critical because they manage the material flows in very variable conditions. The deterioration level of the products as well as the market demand are the main factors that can influence warehouse strategy. This research aims to consider the application of sustainability principles in the context of warehouse storage, evaluat…

0106 biological sciencesTraceabilityComputer scienceSupply chainGeneral Decision SciencesContext (language use)010501 environmental sciences010603 evolutionary biology01 natural sciencesWarehouse managementSupply and demandSettore ING-IND/17 - Impianti Industriali MeccaniciMonte Carlo simulationEcology Evolution Behavior and Systematics0105 earth and related environmental sciencesEcologyEcological impacts Food waste reduction Monte Carlo simulation Shelf life model Sustainability Warehouse managementEnvironmental economicsEcological impactWarehouseProduct (business)SustainabilitySustainabilityShelf life modelCarbon footprintEcological impacts; Food waste reduction; Monte Carlo simulation; Shelf life model; Sustainability; Warehouse managementFood waste reductionEcological Indicators
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Impact of Freshwater Inflow From the Volturno River on Coastal Circulation

2020

The coastal area located in front of the Volturno river's estuary (Gulf of Gaeta, central-eastern Tyrrhenian Sea) has been synoptically sampled during seven surveys, between June 2012 and October 2014. The vertical profiles of temperature and salinity have been acquired on a high resolution nearly-regular grid, in order to describe the spatial and temporal variability of the water masses characteristics. Moreover, to provide a first assessment of the steady circulation at small scale, the three-dimensional velocity field associated to each survey has been obtained through the full momentum equations of the Princeton Ocean Model. The data analysis has shown the entire water column characteri…

0106 biological sciencesWater massFreshwater inflowlcsh:QH1-199.5010504 meteorology & atmospheric sciencesWater masses characterizationTemperature salinity diagramsStratification (water)hydrologyOcean EngineeringOcean numerical simulationOcean numerical modellcsh:General. Including nature conservation geographical distributionAquatic ScienceOceanography01 natural sciencesTyrrhenia seaWater columnlcsh:Science0105 earth and related environmental sciencesWater Science and TechnologyGlobal and Planetary Change010604 marine biology & hydrobiologySettore GEO/01 - Paleontologia E Paleoecologiaeastern Tyrrhenian SeaPrinceton Ocean Modelcoastal circulation eastern Tyrrhenian Sea hydrology ocean numerical model water massesLongshore driftOceanographyOcean numerical model; eastern Tyrrhenian Sea; coastal circulation; water masses; hydrologycoastal circulationlcsh:QThermohaline circulationwater massesGeologyHydrology - HydrologieFrontiers in Marine Science
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Effect of acyl-CoA oxidase activity on the accumulation of gamma-decalactone by the yeast Yarrowia lipolytica: a factorial approach.

2007

International audience; beta-Oxidation is a cyclic pathway involved in the degradation of lipids. In yeast, it occurs in peroxisomes and the first step is catalyzed by an acyl-CoA oxidase (Aoxp). The yeast Yarrowia lipolytica possesses several genes (POX) coding for Aoxps. This study is based on the factorial analysis of results obtained with the many POX derivative strains that have been constructed previously. The effect of interactions between Aoxps on the acyl-CoA oxidase (Aox) activity was important even at the second order. We then investigated the effect of Aox activity on growth and lactone production. Aox activity was correlated with acidification of the medium by cells and with ce…

0106 biological sciencesYarrowia lipolyticaMESH: Enzyme ActivationMetabolic Clearance RateMESH: Factor Analysis StatisticalYarrowiaBiologymodèleModels Biological01 natural sciencesApplied Microbiology and BiotechnologyLactones03 medical and health sciencesEnzyme activatorSpecies SpecificityMESH: Computer Simulation010608 biotechnologyCombinatorial Chemistry TechniquesAcyl-CoA oxidaseMESH: Species SpecificityComputer Simulation030304 developmental biologychemistry.chemical_classificationMESH: Metabolic Clearance Rate0303 health sciencesOxidase testmétabolisme des acides grasAcyl-CoA oxidase activityMESH: Acyl-CoA OxidaseMESH: Models BiologicalYarrowia[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry Molecular Biology/Molecular biologyGeneral MedicinePeroxisomebiology.organism_classificationYeastEnzyme ActivationBiochemistrychemistrylactoneMolecular MedicineMESH: Combinatorial Chemistry TechniquesMESH: YarrowiaAcyl-CoA OxidaseFactor Analysis StatisticalLactoneMESH: Lactones
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GenExP, un logiciel simulateur de paysages agricoles pour l'étude de la diffusion de transgènes

2007

 ; The software GENEXP allows to simulate 2-dimensional agricultural landscapes by using a traditional algorithmic geometry. Based on real or realistic field-patterns, GENEXP provides multiannual maps of agricultural landscapes, which are used by softwares simulating the dispersal of GM pollen grains and seeds at various scales.; GENEXP est un simulateur de paysages agricoles qui engendre des découpages parcellaires en utilisant une géométrie algorithmique classique. GENEXP fournit, sur la base de parcellaires réels ou réalistes, des cartes pluriannuelles de paysages agricoles utilisables par des logiciels qui simulent la dispersion des pollens et des graines d'OGM à différentes échelles.

0106 biological sciences[INFO.INFO-AI] Computer Science [cs]/Artificial Intelligence [cs.AI]010603 evolutionary biology01 natural sciencesVORONOÏ TESSELATION[ SDV.EE ] Life Sciences [q-bio]/Ecology environmentAGRICULTURAL LANDSCAPE[INFO.INFO-AI]Computer Science [cs]/Artificial Intelligence [cs.AI]diagrammes de Voronoi[ INFO.INFO-AI ] Computer Science [cs]/Artificial Intelligence [cs.AI]DIAGRAMMES DE VORONOÏpaysage agricole[SDV.EE]Life Sciences [q-bio]/Ecology environmentFIELD PATTERN[INFO.INFO-DB]Computer Science [cs]/Databases [cs.DB]voronoi tesselationPROCESSUS PONCTUEL MARKOVIEN04 agricultural and veterinary sciencesGeneral Medicineflux de genes15. Life on landsimulationPARCELLAIRE[SDV.EE] Life Sciences [q-bio]/Ecology environmentagricultural landscape field-pattern germs distribution markov point process gene flowpaysage agricole parcellaire simulation diagrammes de Voronoi distribution de germes processus ponctuel markovien flux de genes voronoi tesselation INFORMATIQUEGERMS DISTRIBUTIONINFORMATIQUE040103 agronomy & agricultureMARKOV POINT PROCESS0401 agriculture forestry and fisheriesfield-patterngene flowDISTRIBUTION DE GERMES
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