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showing 10 items of 4920 documents

Covalent DNA adducts formed by benzo[c]chrysene in mouse epidermis and by benzo[c]chrysene fjord-region diol epoxides reacted with DNA and polynucleo…

1997

The metabolic activation in mouse skin of benzo[c]chrysene (B[c]C), a weakly carcinogenic polycyclic aromatic hydrocarbon (PAH) present in coal tar and crude oil, was investigated. Male Parkes mice were treated topically with 0.5 mumol of B[c]C, and DNA was isolated from the treated areas of skin at various times after treatment and analyzed by 32P-postlabeling. Seven adduct spots were detected, at a maximum level of 0.89 fmol of adducts/microgram of DNA. Four B[c]C-DNA adducts persisted in skin for at least 3 weeks. Treatment of mice with 0.5 mumol of the optically pure putative proximate carcinogens (+)- and (-)-trans-benzo[c]chrysene-9,10-dihydrodiols [(+)- and (-)-B[c]C-diols] led to th…

ChryseneMaleStereochemistryPolynucleotidesToxicologyAdductchemistry.chemical_compoundDNA AdductsMiceAnimalsCarcinogenBiotransformationChromatography High Pressure LiquidSkinCarcinogenic Polycyclic Aromatic HydrocarbonSingle-Strand Specific DNA and RNA EndonucleasesAbsolute configurationGeneral MedicineDNAPhenanthreneschemistryCovalent bondPolynucleotideAutoradiographyEpoxy CompoundsSpectrophotometry UltravioletChromatography Thin LayerDNAChemical research in toxicology
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Chelated η5-cyclopentadienyl-η-ethyl complexes of molybdenum and tungsten; molecular structure of W(η5-C5H4CH2-η-CH2)(CO)3

2000

Abstract Molybdenum and tungsten complexes M(η5-C5H4CH2-η-CH2)(CO)3 (M=Mo, W) containing the bidentate ethyl-functionalized cyclopentadienyl ligand C5H4CH2CH2 have been synthesized by the reaction of spiro[2.4]hepta-4,6-diene with M(CO)3L3 (M=Mo; L3=1,3,5-C6H3Me3; M=W; L=NCMe). Reaction of the more stable tungsten complex with C6H5ICl2 and HBF4 gave complexes of the type W(η5-C5H4CH2CH2Cl)(CO)3Cl, W(η5-C5H4CH2CH3)(CO)3Cl and W(η5-C5H4CH2CH3)(CO)3(FBF3), respectively. The crystal structure of the tungsten tricarbonyl complex W(η5-C5H4CH2-η-CH2)(CO)3 has been determined by X-ray crystal diffraction on a single crystal and shows a four-legged piano stool structure.

CienciaDenticitySciencechemistry.chemical_elementCrystal structureTungstenBiochemistryTungstenInorganic ChemistryCrystalCyclopentadienyl-ethyl ligandCyclopentadienyl complexCIENCIAMaterials ChemistryPhysical and Theoretical ChemistryMolybdenumLigandOrganic ChemistrySCIENCEQuímica inorgánicaCrystallographychemistryMolybdenumSingle crystalChemistry inorganic
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Formation of a novel ferromagnetic end-to-end cyanate bridged homochiral helical copper(ii) Schiff base complex via spontaneous symmetry breaking

2014

A homochiral helical coordination polymer of copper(II) has been synthesized using achiral precursors via spontaneous symmetry breaking and has been confirmed by single crystal X-ray diffraction and solid-state CD spectroscopy. The variable temperature magnetic measurements indicate the presence of weak ferromagnetic exchange interactions mediated by end-to-end cyanate bridges (J = +0.12 cm(-1)).

Circular dichroismSchiff baseStereochemistryChemistryCoordination polymerSpontaneous symmetry breakingchemistry.chemical_elementcircular dichroism spectroscopyCyanateferromagnetismsingle crystalsCopperX-ray diffractionInorganic ChemistryCrystallographychemistry.chemical_compoundfunctional groupsFerromagnetismcopperferromagnetic materialsta116Single crystalDalton Transactions
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Investigations of Chl a aggregates cross-linked by dioxane in 3-methylpentane

1997

In this work, dioxane-bound aggregates of chlorophyll a are prepared in 3-methylpentane. The properties of the aggregates are studied by using steady-state and time-resolved spectroscopies. The Q -region absorption spectrum of the y chlorophyll a-dioxane aggregate shows four clearly resolvable narrow bands with comparable intensities. The band maxima are located at 683, 689, 698 and 702 nm. The emission spectrum consists of two emission bands centred at 699 and 702 nm suggesting the presence of two types of aggregates. High degree of fluorescence polarization is detected yielding the angles between the absorption transition moments with respect to the 702 nm emission transition moment. The …

Circular dichroismSingle-photon countingAbsorption spectroscopyChlorophyll aTransition dipole momentBiophysicsAnalytical chemistry010402 general chemistry01 natural sciencesBiochemistryMolecular physicsDioxane aggregate03 medical and health sciencesFluorescence polarizationEmission spectrumAbsorption (electromagnetic radiation)030304 developmental biology0303 health sciencesChemistryCell Biology0104 chemical sciencesψ-type circular dichroismWavelengthExcitation delocalizationExcitationFluorescence anisotropyBiochimica et Biophysica Acta (BBA) - Bioenergetics
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Binding of several phenothiazine neuroleptics to a common binding site of alpha 1-acid glycoprotein, orosomucoid.

1983

The interaction of several phenothiazine neuroleptics with alpha 1-acid glycoprotein was investigated using circular dichroism and equilibrium dialysis techniques. For chlorpromazine only, one high-affinity binding site of the protein was found. The binding of the drug to this single site generated typical polyphasic extrinsic Cotton effects. Since several other phenothiazine neuroleptics gave qualitatively comparable extrinsic Cotton effects in the presence of alpha 1-acid glycoprotein and potently inhibited the binding of chlorpromazine to the single site, it was concluded that all phenothiazine derivatives investigated bound preferentially to only one common binding site of the alpha 1-a…

Circular dichroismStereochemistryPharmaceutical ScienceOrosomucoidchemistry.chemical_compoundStructure-Activity RelationshipSingle sitePhenothiazinesPhenothiazinemedicineHumansBinding siteChlorpromazinechemistry.chemical_classificationBinding SitesbiologyChemistryCircular DichroismOrosomucoidBiochemistryα1 acid glycoproteinbiology.proteinGlycoproteinDialysismedicine.drugAntipsychotic AgentsProtein BindingJournal of pharmaceutical sciences
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Variation of haplotype distributions of two genomic regions of Citrus tristeza virus populations from eastern Spain.

2003

Genetic variation in natural populations of Citrus tristeza virus (CTV) was studied using haplotypes detected by single-strand conformation polymorphism (SSCP) analysis of two genomic regions (p20 gene and segment A, located in ORF1a). Analysis of 254 samples from 125 trees, collected at 12 different sites, yielded 8 different haplotypes for p20 and 5 for segment A. The most frequent haplotype of p20 was predominant at all sites, but several sites differed in the predominance of segment A haplotypes. At most sites, the homozygosity observed for the p20 gene tended to be higher than expected in a neutral evolution, whereas the opposite was true for segment A. Comparison of the populations at…

CitrusClosterovirusPopulationGenome ViralBiologyAnalysis of molecular varianceGenetic variationotorhinolaryngologic diseasesGeneticseducationEcology Evolution Behavior and SystematicsPolymorphism Single-Stranded ConformationalPlant DiseasesGeneticseducation.field_of_studyAnalysis of VarianceHaplotypeHomozygoteCitrus tristeza virusGenetic VariationSingle-strand conformation polymorphismbiology.organism_classificationGenetics PopulationHaplotypesSpainRootstockNeutral theory of molecular evolutionMolecular ecology
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A multiplex assay with 52 single nucleotide polymorphisms for human identification.

2006

A total of 52 SNPs reported to be polymorphic in European, Asian and African populations were selected. Of these, 42 were from the distal regions of each autosome (except chromosome 19). Nearly all selected SNPs were located at least 100 kb distant from known genes and commonly used STRs. We established a highly sensitive and reproducible SNP-typing method with amplification of all 52 DNA fragments in one PCR reaction followed by detection of the SNPs with two single base extension reactions analysed using CE. The amplicons ranged from 59 to 115 bp in length. Complete SNP profiles were obtained from 500 pg DNA. The 52 loci were efficiently amplified from degraded samples where previously on…

Clinical BiochemistryPopulationSingle-nucleotide polymorphismPaternityBiologyBiochemistryPolymerase Chain ReactionPolymorphism Single NucleotideAnalytical Chemistrylaw.inventionGene FrequencylawMultiplex polymerase chain reactionHumanseducationAllele frequencyPolymerase chain reactionDNA PrimersGeneticseducation.field_of_studyAutosomeRacial GroupsSequence Analysis DNAAmpliconForensic MedicineSingle-base extensionDNA FingerprintingElectrophoresis
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Structural clustering of millions of molecular graphs

2014

We propose an algorithm for clustering very large molecular graph databases according to scaffolds (i.e., large structural overlaps) that are common between cluster members. Our approach first partitions the original dataset into several smaller datasets using a greedy clustering approach named APreClus based on dynamic seed clustering. APreClus is an online and instance incremental clustering algorithm delaying the final cluster assignment of an instance until one of the so-called pending clusters the instance belongs to has reached significant size and is converted to a fixed cluster. Once a cluster is fixed, APreClus recalculates the cluster centers, which are used as representatives for…

Clustering high-dimensional dataFuzzy clusteringTheoretical computer sciencek-medoidsComputer scienceSingle-linkage clusteringCorrelation clusteringConstrained clusteringcomputer.software_genreComplete-linkage clusteringGraphHierarchical clusteringComputingMethodologies_PATTERNRECOGNITIONData stream clusteringCURE data clustering algorithmCanopy clustering algorithmFLAME clusteringAffinity propagationData miningCluster analysiscomputerk-medians clusteringClustering coefficientProceedings of the 29th Annual ACM Symposium on Applied Computing
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Incrementally Assessing Cluster Tendencies with a~Maximum Variance Cluster Algorithm

2003

A straightforward and efficient way to discover clustering tendencies in data using a recently proposed Maximum Variance Clustering algorithm is proposed. The approach shares the benefits of the plain clustering algorithm with regard to other approaches for clustering. Experiments using both synthetic and real data have been performed in order to evaluate the differences between the proposed methodology and the plain use of the Maximum Variance algorithm. According to the results obtained, the proposal constitutes an efficient and accurate alternative.

Clustering high-dimensional datak-medoidsComputer scienceCURE data clustering algorithmSingle-linkage clusteringCanopy clustering algorithmVariance (accounting)Data miningCluster analysiscomputer.software_genrecomputerk-medians clustering
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Genome-wide detection of signatures of selection in three Valdostana cattle populations

2020

International audience; The Valdostana is a local dual purpose cattle breed developed in Italy. Three populations are recognized within this breed, based on coat colour, production level, morphology and temperament: Valdostana Red Pied (VPR), Valdostana Black Pied (VPN) and Valdostana Chestnut (VCA). Here, we investigated putative genomic regions under selection among these three populations using the Bovine 50K SNP array by combining three different statistical methods based either on allele frequencies (F-ST) or extended haplotype homozygosity (iHS and Rsb). In total, 8, 5 and 8 chromosomes harbouring 13, 13 and 16 genomic regions potentially under selection were identified by at least tw…

CoatCandidate geneMeatGenotypelocal cattle population[SDV]Life Sciences [q-bio]Quantitative Trait LociBovine BeadChip 50K; candidate genes; local cattle populations; selection signaturesRuns of HomozygosityBiologyBreedingGenomePolymorphism Single Nucleotideselection signatures03 medical and health sciencesFood AnimalsGene FrequencyAnimalsSelection GeneticGeneAllele frequencySelection (genetic algorithm)Genetic Association Studies030304 developmental biology2. Zero hungerGenetics0303 health sciencesGenomeBehavior AnimalHomozygote0402 animal and dairy sciencecandidate geneBovine BeadChip 50K04 agricultural and veterinary sciencesGeneral Medicine040201 dairy & animal sciencelocal cattle populationsMilkPhenotypeHaplotypesAnimal Science and ZoologyCattlecandidate genesSNP array
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