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showing 10 items of 4920 documents

Real-time detection of BRAF V600E mutation from archival hairy cell leukemia FFPE tissue by nanopore sequencing

2018

The MinION is a miniaturized high-throughput next generation sequencing platform of novel conception. The use of nucleic acids derived from formalin-fixed paraffin-embedded samples is highly desirable, but their adoption for molecular assays is hurdled by the high degree of fragmentation and by the chemical-induced mutations stemming from the fixation protocols. In order to investigate the suitability of MinION sequencing on formalin-fixed paraffin-embedded samples, the presence and frequency of BRAF c.1799T > A mutation was investigated in two archival tissue specimens of Hairy cell leukemia and Hairy cell leukemia Variant. Despite the poor quality of the starting DNA, BRAF mutation was su…

Proto-Oncogene Proteins B-raf0301 basic medicineDNA Mutational AnalysisComputational biologyBiologybraf; ffpe; hairy cell leukemia; minion; nanopore sequencing; ngs; molecular biology; geneticsPolymerase Chain ReactionPolymorphism Single NucleotideDNA sequencingNanopores03 medical and health sciencesngsBiomarkers TumorGeneticsmedicinehairy cell leukemiaHumansDigital polymerase chain reactionHairy cell leukemiaGenetic TestingMolecular BiologyHairy Cell Leukemia VariantLeukemia Hairy CellMolecular pathologyPoint mutationHigh-Throughput Nucleotide SequencingDNA NeoplasmSequence Analysis DNAGeneral Medicinemedicine.diseaseminion030104 developmental biologyMolecular Diagnostic TechniquesMinionnanopore sequencingMutationNanopore sequencingbrafffpeMolecular Biology Reports
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Single tube optimisation of APOE genotyping based on melting curve analysis

2008

Objectives: To develop and validate a single-tube protocol for APOE genotyping using fluorescent probes. Design and methods: We have designed and validated a hybrid, single-tube, SimpleProbe/FRET probe protocol that takes advantage of the different probe wavelength emissions. Results: Our method offers high quality outcomes, minimum interferences between probe signals and is 100% concordant with the reference protocol. Conclusions: This method is cheaper, faster and more reliable and versatile than other alternatives proposed. © 2008 Elsevier Inc. All rights reserved.

Protocol (science)GenotypeComputer scienceClinical BiochemistryNanotechnologyGeneral MedicinePolymerase Chain ReactionMelting curve analysisSingle tubeApolipoproteins EValidation studiesCardiovascular DiseasesHumansThermodynamicsGenotypingAlgorithmAnalysisDNA PrimersClinical Biochemistry
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A novel oxalate-based three-dimensional coordination polymer showing magnetic ordering and high proton conductivity

2017

A novel three-dimensional (3D) coordination polymer with the formula (C3N2H5)4[MnCr2(ox)6]·5H2O (2), where ox = oxalate and C3N2H5 = imidazolium cation, is reported. Single crystal X-ray diffraction reveals that this porous coordination polymer adopts a chiral three-dimensional quartz-like architecture, with the guest imidazolium cations and water molecules being hosted in its pores. This novel multifunctional material exhibits both a ferromagnetic ordering at TC = 3.0 K, related to the host MnCr2 network, and high proton conductivity [1.86 × 10−3 S cm−1 at 295 K and 88% relative humidity (RH)] due to the presence of the acidic imidazolium cations and free water molecules. The similarity of…

ProtonChemistryCoordination polymerInorganic chemistry02 engineering and technologyConductivity010402 general chemistry021001 nanoscience & nanotechnology01 natural sciencesOxalate0104 chemical sciencesInorganic ChemistryCrystallographychemistry.chemical_compoundFerromagnetismMolecule[CHIM]Chemical SciencesAmmonium0210 nano-technologySingle crystalComputingMilieux_MISCELLANEOUS
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"Table 1" of "Search for supersymmetry with jets, missing transverse momentum and at least one hadronically decaying $\tau$ lepton in proton-proton c…

2012

Distribution of the missing transverse energy before final selection requirement on the effective mass. Tabulated are the observed Data events, the Standard Model predictions and the expected rates for two signal scenarios with Lambda=30TeV / tan(beta) = 20 and Lambda=40GeV / tan(beta)=30 respectively.

Proton-Proton ScatteringDN/DETExclusiveSUSY7000.0P P --> JETS .GE.1TAU MMSupersymmetrySingle Differential DistributionJet Production
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"Table 2" of "Search for squarks and gluinos with the ATLAS detector in final states with jets and missing transverse momentum using 4.7 fb^-1 of sqr…

2012

The meff_incl distribution in Signal Region Ap.

Proton-Proton ScatteringDN/DMComputerSystemsOrganization_COMPUTER-COMMUNICATIONNETWORKSExclusive7000.0Single Differential DistributionJet ProductionP P --> JETS MMMathematicsofComputing_DISCRETEMATHEMATICS
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"Table 1" of "Search for squarks and gluinos with the ATLAS detector in final states with jets and missing transverse momentum using 4.7 fb^-1 of sqr…

2012

The meff_incl distribution in Signal Region A.

Proton-Proton ScatteringDN/DMExclusive7000.0Single Differential DistributionJet ProductionP P --> JETS MM
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"Table 5" of "Search for squarks and gluinos with the ATLAS detector in final states with jets and missing transverse momentum using 4.7 fb^-1 of sqr…

2012

The meff_incl distribution in Signal Region D.

Proton-Proton ScatteringDN/DMExclusive7000.0Single Differential DistributionJet ProductionP P --> JETS MM
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"Table 4" of "Search for squarks and gluinos with the ATLAS detector in final states with jets and missing transverse momentum using 4.7 fb^-1 of sqr…

2012

The meff_incl distribution in Signal Region C.

Proton-Proton ScatteringDN/DMExclusive7000.0Single Differential DistributionJet ProductionP P --> JETS MM
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"Table 6" of "Search for squarks and gluinos with the ATLAS detector in final states with jets and missing transverse momentum using 4.7 fb^-1 of sqr…

2012

The meff_incl distribution in Signal Region E.

Proton-Proton ScatteringDN/DMExclusive7000.0Single Differential DistributionJet ProductionP P --> JETS MM
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"Table 3" of "Search for squarks and gluinos with the ATLAS detector in final states with jets and missing transverse momentum using 4.7 fb^-1 of sqr…

2012

The meff_incl distribution in Signal Region B.

Proton-Proton ScatteringDN/DMExclusive7000.0Single Differential DistributionJet ProductionP P --> JETS MM
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