Search results for "SoMe"

showing 10 items of 5114 documents

SANS (USH1G) regulates pre-mRNA splicing by mediating the intra-nuclear transfer of tri-snRNP complexes

2021

Abstract Splicing is catalyzed by the spliceosome, a compositionally dynamic complex assembled stepwise on pre-mRNA. We reveal links between splicing machinery components and the intrinsically disordered ciliopathy protein SANS. Pathogenic mutations in SANS/USH1G lead to Usher syndrome—the most common cause of deaf-blindness. Previously, SANS was shown to function only in the cytosol and primary cilia. Here, we have uncovered molecular links between SANS and pre-mRNA splicing catalyzed by the spliceosome in the nucleus. We show that SANS is found in Cajal bodies and nuclear speckles, where it interacts with components of spliceosomal sub-complexes such as SF3B1 and the large splicing cofact…

ProteomicsAcademicSubjects/SCI00010Ribonucleoprotein U4-U6 Small NuclearSF3B1 GeneMass Spectrometry0302 clinical medicineRNA Small NuclearRNA PrecursorsIn Situ Hybridization FluorescenceRibonucleoprotein0303 health sciencesChemistryRibonucleoproteins Small NuclearImmunohistochemistryCell biologyDNA-Binding Proteinsmedicine.anatomical_structureGene Knockdown TechniquesRNA splicingRNA Splicing FactorsUsher SyndromesSpliceosomeCoiled BodiesNerve Tissue ProteinsBiologyMinor Histocompatibility Antigens03 medical and health sciencesMicroscopy Electron TransmissionRNA and RNA-protein complexesGeneticsmedicineHumanssnRNPEye ProteinsGeneCell Proliferation030304 developmental biologyCell NucleusRNAmedicine.diseasePhosphoproteinsCiliopathyAlternative SplicingCell nucleusHEK293 CellsCajal bodyCytoplasmSpliceosomesNucleus030217 neurology & neurosurgeryTranscription FactorsNucleic Acids Research
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Proteomic analysis of extracellular vesicles secreted by primary human epithelial endometrial cells reveals key proteins related to embryo implantati…

2022

Abstract Background Successful implantation is dependent on coordination between maternal endometrium and embryo, and the role of EVs in the required cross-talk cell-to-cell has been recently established. In this regard, it has been reported that EVs secreted by the maternal endometrium can be internalized by human trophoblastic cells transferring their contents and enhancing their adhesive and invasive capacity. This is the first study to comprehensively evaluate three EV isolation methods on human endometrial epithelial cells in culture and to describe the proteomic content of EVs secreted by pHEECs from fertile women. Methods Ishikawa cells and pHEECs were in vitro cultured and hormonall…

ProteomicsAdultAdolescentProteomeQH471-489Embryo developmentExosomesEndometrial cellsEndometriumYoung AdultEndocrinologyHumansCells CulturedResearchReproductionObstetrics and GynecologyEpithelial CellsGynecology and obstetricsExtracellular vesiclesFertilityReproductive MedicineEndometrial receptivityEmbryo implantationRG1-991FemaleUltracentrifugationMicrovesiclesDevelopmental BiologyReproductive Biology and Endocrinology
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Proteomic analysis of exosome-like vesicles derived from breast cancer cells.

2012

Background/Aim: The phenomenon of membrane vesicle-release by neoplastic cells is a growing field of interest in cancer research, due to their potential role in carrying a large array of tumor antigens when secreted into the extracellular medium. In particular, experimental evidence show that at least some of the tumor markers detected in the blood circulation of mammary carcinoma patients are carried by membrane-bound vesicles. Thus, biomarker research in breast cancer can gain great benefits from vesicle characterization. Materials and Methods: Conditioned medium was collected from serum starved MDA-MB-231 sub-confluent cell cultures and exosome-like vesicles (ELVs) were isolated by ultra…

ProteomicsBreast NeoplasmsExosomesCulture Media Serum-FreeNeoplasm ProteinsBreast cancer extracellular vesicles protein biomarker 2D-PAGE proteomic profiling MALDI-ToF mass spectrometry MDA-MB-231 cellsMicroscopy Electron TransmissionSettore BIO/13 - Biologia ApplicataTandem Mass SpectrometrySettore BIO/10 - BiochimicaCell Line TumorHumansFemaleSettore BIO/06 - Anatomia Comparata E CitologiaChromatography LiquidAnticancer research
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Contribution of proteomics to understanding the role of tumor-derived exosomes in cancer progression: State of the art and new perspectives

2013

Exosomes are nanometer-sized vesicles (40-100 nm diameter) of endocytic origin released from different cell types under both normal and pathological conditions. They function as cell free messengers, playing a relevant role in the cell-cell communication that is strongly related to the nature of the molecules (proteins, mRNAs, miRNAs, and lipids) that they transport. Tumor cells actively shed exosomes into their surrounding microenvironment and growing evidence indicates that these vesicles have pleiotropic functions in the regulation of tumor progression, promoting immune escape, tumor invasion, neovascularization, and metastasis. During the last few years remarkable efforts have been made…

ProteomicsCell signalingProteomeEndocytic cycleCell CommunicationBiologyExosomesProteomicsBiochemistryRNA TransportCell biology / Tumor-derived exosome / Tumor progressionSettore BIO/13 - Biologia ApplicataNeoplasmsmicroRNABiomarkers TumorTumor MicroenvironmentAnimalsHumansMolecular BiologyTumor microenvironmentTumor-DerivedMicrovesiclesCell biologyTumor progressionDisease ProgressionPROTEOMICS
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Role of Extracellular Vesicles in Hematological Malignancies.

2015

In recent years the role of tumor microenvironment in the progression of hematological malignancies has been widely recognized. Recent studies have focused on how cancer cells communicate within the microenvironment. Among several factors (cytokines, growth factors, and ECM molecules), a key role has been attributed to extracellular vesicles (EV), released from different cell types. EV (microvesicles and exosomes) may affect stroma remodeling, host cell functions, and tumor angiogenesis by inducing gene expression modulation in target cells, thus promoting cancer progression and metastasis. Microvesicles and exosomes can be recovered from the blood and other body fluids of cancer patients a…

ProteomicsCell typeImmunology and Microbiology (all)lcsh:MedicineReview ArticleBiologyProteomicsExosomesGeneral Biochemistry Genetics and Molecular BiologyMetastasisExtracellular VesiclesStromaSettore BIO/13 - Biologia ApplicatamedicineTumor MicroenvironmentHumansTumor microenvironmentBiochemistry Genetics and Molecular Biology (all)General Immunology and MicrobiologyNeovascularization Pathologiclcsh:RCancerGeneral Medicinemedicine.diseaseMicrovesiclesCell biologyGene Expression Regulation NeoplasticHematologic NeoplasmsCancer cellBiochemistry Genetics and Molecular Biology (all); Immunology and Microbiology (all)BioMed research international
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Biological properties of extracellular vesicles and their physiological functions

2015

The authors wish to thank Dr R Simpson and Dr D Taylor for critical reading of the manuscript and acknowledge the Horizon 2020 European Cooperation in Science and Technology programme and its support of our European Network on Microvesicles and Exosomes in Health & Disease (ME-HaD; BM1202 www.cost.eu/COST_Actions/bmbs/Actions/BM1202). In the past decade, extracellular vesicles (EVs) have been recognized as potent vehicles of intercellular communication, both in prokaryotes and eukaryotes. This is due to their capacity to transfer proteins, lipids and nucleic acids, thereby influencing various physiological and pathological functions of both recipient and parent cells. While intensive invest…

ProteomicsCellular distributionMATURE DENDRITIC CELLSReviewReview ArticleUrineEmbryo developmentMonocyteProtein processingVascular biologyFecesVesícules seminalsSYNCYTIOTROPHOBLAST MICROVILLOUS MEMBRANESCell selectionPregnancyT lymphocyteBileCELL-DERIVED EXOSOMESBiogenesisLung lavageUterus fluidInnate immunityMale genital systemlcsh:CytologyMicrovesicleOUTER-MEMBRANE VESICLESBlood clottingprokaryoteEukaryotaExtracellular vesicleRNA analysisCell biologyBloodCerebrospinal fluidLiver metabolismmicrovesicleMorphogenHumanNervous systemCell signalingBreast milkNatural killer cellFisiologiaExtracellular vesiclesExosomelcsh:QH573-671SalivaBiologyBiology and Life SciencesDNAPlantRNA transportCell functionMacrophageMolecular biologyPhysiologyMedizinProteomicsFACTOR PATHWAY INHIBITOReukaryoteProtein glycosylationExtracellular spaceTissue repairEspai extracel·lularReticulocyteSeminal plasmaMesenchymal stem cellAntigen presenting cellSeminal vesiclesNose mucusBiofilmNeutrophilMicroRNAPLANT-MICROBE INTERACTIONSLipidAmnion fluidProkaryotamicroparticleCell interactionCell transporteukaryote exosome extracellular vesicle microparticle microvesicle physiology prokaryoteBone mineralizationMicroorganismHistologyAdaptive immunityMembrane vesicleComputational biologyMembrane receptorBiologyStressCell communicationMast cellMESENCHYMAL STEM-CELLSHUMAN ENDOTHELIAL-CELLSexosomeCytokineSynovial fluidCell BiologyNonhumanIMMUNE-MODULATORY FEATURESReview articleDNA contentphysiologyRNAINTESTINAL EPITHELIAL-CELLSextracellular vesicleBody fluidLectinBiogenesis
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Mass Spectrometry and Imaging Analysis of Nanoparticle-Containing Vesicles Provide a Mechanistic Insight into Cellular Trafficking

2014

Rational design of nanocarriers for drug delivery approaches requires an unbiased knowledge of uptake mechanisms and intracellular trafficking pathways. Here we dissected these processes using a quantitative proteomics approach. We isolated intracellular vesicles containing superparamagnetic iron oxide polystyrene nanoparticles and analyzed their protein composition by label-free quantitative mass spectrometry. The proteomic snapshot of organelle marker proteins revealed that an atypical macropinocytic-like mechanism mediated the entry of nanoparticles. We show that the entry mechanism is controlled by actin reorganization, atypical macropinocytic signaling, and ADP-ribosylation factor 1. A…

ProteomicsEndosomeVesicleQuantitative proteomicsGeneral EngineeringGeneral Physics and AstronomyBiological TransportBiologyProteomicsEndocytosisMass SpectrometryCell biologylaw.inventionMicroscopy Electron TransmissionConfocal microscopylawOrganelleNanoparticlesGeneral Materials ScienceNanocarriersIntracellularACS Nano
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Extracellular vesicles from parasitic helminths contain specific excretory/secretory proteins and are internalized in intestinal host cells.

2012

The study of host-parasite interactions has increased considerably in the last decades, with many studies focusing on the identification of parasite molecules (i.e. surface or excretory/secretory proteins (ESP)) as potential targets for new specific treatments and/or diagnostic tools. In parallel, in the last few years there have been significant advances in the field of extracellular vesicles research. Among these vesicles, exosomes of endocytic origin, with a characteristic size ranging from 30-100 nm, carry several atypical secreted proteins in different organisms, including parasitic protozoa. Here, we present experimental evidence for the existence of exosome-like vesicles in parasitic…

ProteomicsFascioliasisScienceEndocytic cycleHelminth InfectionSoil-Transmitted HelminthsExosomesBiochemistryMicrobiologyHost-Parasite InteractionsCell Line TumorEchinostomaMolecular Cell BiologyParasitic DiseasesAnimalsHumansSecretionIntestinal MucosaBiologyEchinostomiasisMultidisciplinarybiologyVesicleQRParasite PhysiologyProteinsHelminth ProteinsImmunogold labellingFasciola hepaticabiology.organism_classificationMicrovesiclesRatsCell biologyHost-Pathogen InteractionInfectious DiseasesSecretory proteinSmall MoleculesExcretory systemMedicineProtozoaParasitologyMembranes and SortingZoologyResearch ArticleHelminthologyNeglected Tropical Diseases
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Classes of non-conventional tetraspanins defined by alternative splicing

2019

AbstractTetraspanins emerge as a family of membrane proteins mediating an exceptional broad diversity of functions. The naming refers to their four transmembrane segments, which define the tetraspanins‘ typical membrane topology. In this study, we analyzed alternative splicing of tetraspanins. Besides isoforms with four transmembrane segments, most mRNA sequences are coding for isoforms with one, two or three transmembrane segments, representing structurally mono-, di- and trispanins. Moreover, alternative splicing may alter transmembrane topology, delete parts of the large extracellular loop, or generate alternative N- or C-termini. As a result, we define structure-based classes of non-con…

ProteomicsGene isoformRNA splicingTetraspaninslcsh:MedicineComputational biologyBiologyEndoplasmic ReticulumArticleStructure-Activity Relationship03 medical and health sciences0302 clinical medicineIsomerismHumanslcsh:ScienceGene030304 developmental biology0303 health sciencesMultidisciplinarylcsh:RAlternative splicingLipid microdomainMembrane ProteinsTransmembrane proteinAlternative SplicingMembrane protein030220 oncology & carcinogenesisMembrane topologyembryonic structureslcsh:QStructural biologyFunction (biology)Scientific Reports
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Spanish human proteome project: Dissection of chromosome 16

2013

11 páginas, 6 figuras.-- et al.

ProteomicsProteomeGene ExpressionBiologyProteomicsMicrobiologíaBiochemistryMass SpectrometryCell LineTranscriptome03 medical and health sciencesChromosome 16Human proteome projectHumansHuman proteome projectShotgun proteomicsDatabases ProteinTranscriptomics030304 developmental biologyGenetics0303 health sciencesGenome Human030302 biochemistry & molecular biologyProteinsGeneral ChemistryChromosome 163. Good healthProteomeHuman genomeSample collectionTranscriptomeChromosomes Human Pair 16
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