Search results for "Statistic"

showing 10 items of 12520 documents

Scaling concepts for polymer brushes and their test with computer simulation

2004

After a brief review of the scaling concepts for static and dynamic properties of polymer brushes in good solvents and Theta solvents, the Monte Carlo evidence is discussed. It is shown that under typical conditions the diameter of the last blob is of the order of 10-20% of the brush height, and therefore pronounced deviations from the self-consistent field predictions occur. In bad solvents, lateral microphase separation occurs leading to an irregular pattern of "dimples". Particularly interesting is the response of brushes to shear deformation, and the interaction between two interpenetrating brushes. Recent attempts to understand the resulting shear forces via molecular-dynamics simulati…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceField (physics)Shear forceMonte Carlo methodBiophysicsBrushSurfaces and InterfacesGeneral ChemistryPolymerlaw.inventionCondensed Matter::Soft Condensed MatterchemistrylawDimpleGeneral Materials ScienceStatistical physicsSoft matterScalingBiotechnologyThe European Physical Journal E
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A Monte Carlo study of diffusion in "living polymers"

1996

We report the first numeric experiments on diffusion in living polymers (polymers that can break and recombine reversibly, and are characterized by an exponential molecular weight distribution). In the simulation we use a modification of the bond fluctuation model which is known to reproduce the correct Rouse dynamics of polymer chains. The diffusion coefficient D reveals a Rouse-type behaviour D ∝ 1/L, where L is the average chain length of the polydisperse system. We also find a D ∝ exp [ − V/2kBT] dependence on the bond energy V, whereas at constant temperature the diffusion coefficient turns out to be inversely proportional, D ∝ ρ−1, to the monomer density of the system ρ in agreement w…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceMonte Carlo methodGeneral Physics and AstronomyThermodynamicsPolymerExponential functionCondensed Matter::Soft Condensed Matterchemistry.chemical_compoundMonomerchemistryMolar mass distributionStatistical physicsDiffusion (business)Bond energyConstant (mathematics)Europhysics Letters (EPL)
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Influence of chain stiffness on knottedness in single polymers.

2013

In the present article, we investigate and review the influence of chain stiffness on self-entanglements and knots in a single polymer chain with Monte Carlo simulations spanning good solvent, theta and globular phases. The last-named are of particular importance as a model system for DNA in viral capsids. Intriguingly, the dependence of knot occurrence and complexity with increasing stiffness is non-trivial, but can be understood with a few simple concepts outlined in the present article.

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceMonte Carlo methodMolecular ConformationStiffnessModel systemNanotechnologyPolymerDNABiochemistryMolecular conformationKnot (unit)BiopolymerschemistrymedicineSolventsNucleic Acid ConformationStatistical physicsmedicine.symptomBiochemical Society transactions
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Structure of Polymers

2014

The structure and thermodynamics of polymers are discussed both with an adapted version of Flory’s regular solution theory and the concept of scaling and random walks. The salient properties of polymers like segregation and elasticity are discussed in terms of these concept. The Flory-Stockmayer theory of gelation is introduced and related to the percolation concept.

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceRegular solutionPolymer architecturePolymerRandom walkCondensed Matter::Soft Condensed MatterSupramolecular polymerschemistryPercolationStatistical physicsElasticity (economics)Scaling
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Structure of bottle-brush polymers in solution: A Monte Carlo test of models for the scattering function

2008

Extensive Monte Carlo results are presented for a lattice model of a bottle-brush polymer under good solvent or Theta solvent conditions. Varying the side chain length, backbone length, and the grafting density for a rigid straight backbone, both radial density profiles of monomers and side chain ends are obtained, as well as structure factors describing the scattering from a single side chain and from the total bottle-brush polymer. To describe the structure in the interior of a very long bottle-brush, a periodic boundary condition in the direction along the backbone is used, and to describe effects due to the finiteness of the backbone length, a second set of simulations with free ends of…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMaterials scienceStatistical Mechanics (cond-mat.stat-mech)ScatteringMonte Carlo methodTheta solventGeneral Physics and AstronomyFOS: Physical sciencesPolymerCondensed Matter - Soft Condensed MatterMolecular physicsConvolutionCondensed Matter::Soft Condensed MatterchemistrySide chainPeriodic boundary conditionsSoft Condensed Matter (cond-mat.soft)Physical and Theoretical ChemistryCondensed Matter - Statistical MechanicsLattice model (physics)
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A fast Monte Carlo algorithm for studying bottle-brush polymers

2011

Obtaining reliable estimates of the statistical properties of complex macromolecules by computer simulation is a task that requires high computational effort as well as the development of highly efficient simulation algorithms. We present here an algorithm combining local moves, the pivot algorithm, and an adjustable simulation lattice box for simulating dilute systems of bottle-brush polymers with a flexible backbone and flexible side chains under good solvent conditions. Applying this algorithm to the bond fluctuation model, very precise estimates of the mean square end-to-end distances and gyration radii of the backbone and side chains are obtained, and the conformational properties of s…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesMathematical optimizationComputer scienceMonte Carlo methodFOS: Physical sciencesGeneral Physics and AstronomyPolymerCondensed Matter - Soft Condensed MatterGyrationchemistryHardware and ArchitectureLattice (order)Side chainSoft Condensed Matter (cond-mat.soft)Statistical physicsStructure factorScalingMonte Carlo algorithmComputer Physics Communications
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Simulation of Copolymer Bottle-Brushes

2007

The structure of bottle-brush polymers with a rigid backbone and flexible side chains is studied in three dimensions, varying the grafting density, the side chain length, and the solvent quality. Some preliminary results of theoretical scaling considerations for one-component bottle-brush polymers in a good solvent are compared with Monte Carlo simulations of a simple lattice model. For the simulations a variant of the pruned-enriched Rosenbluth method (PERM) allowing for simultaneous growth of all side chains in the Monte Carlo sampling is employed. For a symmetrical binary (A,B) bottle-brush polymer, where two types (A,B) of flexible side chains are grafted with one chain end to the backb…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesPhase transitionLattice model (finance)Polymers and PlasticsOrganic ChemistryMonte Carlo methodPolymerCondensed Matter PhysicsCondensed Matter::Soft Condensed MatterchemistryMean field theoryChemical physicsMaterials ChemistrySide chainCylinderStatistical physicsScalingMacromolecular Symposia
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Simulations of phase transitions in macromolecular systems

2002

Abstract The study of phase transitions in concentrated solutions and melts of flexible or stiff polymers is a computational challenge for computer simulations, since already a single polymer coil exhibits nontrivial structure from the scale of a chemical bond (1 A) to the coil radius (100 A), and for the simulation of collective phenomena huge simulation boxes containing many polymers are required. A strategy to deal with this problem is the use of highly coarse-grained models on a lattice, such as the bond fluctuation model. Several studies employing such models will be briefly reviewed, e.g.: temperature-driven isotropic-nematic phase transition in concentrated solutions of semiflexible …

chemistry.chemical_classificationQuantitative Biology::BiomoleculesPhase transitionMaterials scienceComputer simulationMonte Carlo methodGeneral Physics and AstronomyPolymerCondensed Matter::Soft Condensed MatterchemistryChemical bondHardware and ArchitectureChemical physicsLattice (order)Polymer blendStatistical physicsScalingComputer Physics Communications
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Phase transitions of single polymer chains and of polymer solutions: insights from Monte Carlo simulations

2008

The statistical mechanics of flexible and semiflexible macromolecules is distinct from that of small molecule systems, since the thermodynamic limit can also be approached when the number of (effective) monomers of a single chain (realizable by a polymer solution in the dilute limit) is approaching infinity. One can introduce effective attractive interactions into a simulation model for a single chain such that a swollen coil contracts when the temperature is reduced, until excluded volume interactions are effectively canceled by attractive forces, and the chain conformation becomes almost Gaussian at the theta point. This state corresponds to a tricritical point, as the renormalization gro…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesPhase transitionMonte Carlo methodThermodynamicsStatistical mechanicsPolymerCondensed Matter PhysicsCondensed Matter::Soft Condensed MatterTricritical pointchemistryPhase (matter)Thermodynamic limitExcluded volumeGeneral Materials ScienceJournal of Physics: Condensed Matter
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Monte-Carlo Simulation of 3-Dimensional Glassy Polymer Melts: Reptation Versus Single Monomer Dynamics

1995

A polymer melt is simulated at finite temperature by the Monte-Carlo method. We use a coarse-grained model for the polymer system, the bond-fluctuation model. Static properties of the melt can be obtained by generating configurations not with single-monomer- dynamics which moves individual monomers locally, but reptation-dynamics which allows collec- tive motion of the chains. This algorithm can produce equilibrated configurations much faster. It is demonstrated that static properties do not differ from those obtained by single-monomer- dynamics. Values of the radius of gyration, the mean square bond length and similar quantities for different temperatures and densities are presented.

chemistry.chemical_classificationQuantitative Biology::BiomoleculesPhysics and Astronomy (miscellaneous)Dynamics (mechanics)Monte Carlo methodGeneral EngineeringThermodynamicsPolymerAtomic and Molecular Physics and OpticsCondensed Matter::Soft Condensed MatterBond lengthchemistry.chemical_compoundReptationMonomerchemistryRadius of gyrationStatistical physicsPolymer meltJournal de Physique II
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