Search results for "Structural Biology."

showing 10 items of 822 documents

Calcium, calmodulin-dependent protein phosphorylation in Neurospora crassa

1984

Abstract A calcium, calmodulin-dependent protein kinase activity has been partially purified by calmodulin-Sepharose affinity chromatography from the soluble fraction of Neurospora crassa . The phosphorylated peptide has an apparent molecular mass on SDS-polyacrylamide gel of 47 kDa. The apparent half maximal phosphorylation is obtained after 1.5 min at 30° C in the presence of calcium and calmodulin. The apparent half maximal activation of the phosphorylation is obtained at 1 μM calcium, and 0.1 or 0.2 μM calmodulin from bovine brain or Neurospora , respectively. The 32 P incorporation is enhanced about 10-fold by calmodulin.

[SDE] Environmental SciencesCalmodulin[SDV]Life Sciences [q-bio]Biophysicschemistry.chemical_elementCalciumBiochemistryNeurosporaProtein kinaseNeurospora crassa03 medical and health sciencesAffinity chromatographyCalmodulinStructural BiologyGenetics[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyProtein phosphorylation[SDV.BV] Life Sciences [q-bio]/Vegetal BiologyProtein kinase AMolecular BiologyComputingMilieux_MISCELLANEOUS030304 developmental biology0303 health sciencesbiologyNeurospora crassa030306 microbiologyCell Biologybiology.organism_classification[SDV] Life Sciences [q-bio]chemistryBiochemistry[SDE]Environmental Sciencesbiology.proteinPhosphorylationCalcium
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Characterization of a novel selenium methyltransferase from freshwater bacteria showing strong similarities with the calicheamicin methyltransferase

2004

A novel group of Se-methyltransferases is presented. The genetic determinant, named mmtA, which revealed this group was isolated from selenite and selenate-resistant freshwater bacteria. E. coli expressing mmtA and grown with a Se supplement emitted dimethyl selenide (DMSe) and dimethyl diselenide (DMDSe). Phylogenetic analysis divided MmtA-like bacterial sequences into two clusters, one grouping MmtA with S- and O-methyltransferases, and one grouping UbiE C-methyltransferases. Se methylation by some of these MmtA phyletic neighbours was investigated.

[SDE] Environmental SciencesMethyltransferaseStereochemistry[SDV]Life Sciences [q-bio]Molecular Sequence DataBiophysicschemistry.chemical_elementBiochemistryGas Chromatography-Mass Spectrometry03 medical and health sciencesStructural BiologyPhylogeneticsGeneticsAmino Acid SequencePeptide sequencePhylogenyComputingMilieux_MISCELLANEOUS030304 developmental biologyDNA Primerschemistry.chemical_classification0303 health sciencesbiologyPhylogenetic treeBacteriaBase SequenceSequence Homology Amino Acid030306 microbiologyMethylationMethyltransferasesbiology.organism_classificationAmino acid[SDV] Life Sciences [q-bio]Biochemistrychemistry[SDE]Environmental SciencesWater MicrobiologyBacteriaSelenium
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Mollusc shellomes: Past, present and future.

2020

13 pages; International audience; In molluscs, the shell fabrication requires a large array of secreted macromolecules including proteins and polysaccharides. Some of them are occluded in the shell during mineralization process and constitute the shell repertoire. The protein moieties, also called shell proteomes or, more simply, 'shellomes', are nowadays analyzed via high-throughput approaches. These latter, applied so far on about thirty genera, have evidenced the huge diversity of shellomes from model to model. They also pinpoint the recurrent presence of functional domains of diverse natures. Shell proteins are not only involved in guiding the mineral deposition, but also in enzymatic a…

[SDE] Environmental SciencesProteomeLarge arrayCarbohydratesMacroevolutionEmergent propertyLow complexity03 medical and health sciencesStructural BiologyAnimal Shells[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]ShellAnimalsBiomineralComplex systems biology[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsShellomicsComputingMilieux_MISCELLANEOUS030304 developmental biology0303 health sciencesMineralsMatrixChemistry030302 biochemistry & molecular biologyMineral depositionEvolvability[SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate ZoologyEvolutionary biologyMolluscaProteome[SDE]Environmental Sciences[SDV.BA.ZI] Life Sciences [q-bio]/Animal biology/Invertebrate ZoologyMolluscJournal of structural biology
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Impact of the main salivary proteins on aroma release

2014

International audience

[SDV.BBM.BP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Biophysics[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry Molecular Biology/Biomolecules [q-bio.BM][SDV.AEN] Life Sciences [q-bio]/Food and Nutrition[CHIM.ANAL] Chemical Sciences/Analytical chemistry[CHIM.ANAL]Chemical Sciences/Analytical chemistry[SDV.BBM.BS] Life Sciences [q-bio]/Biochemistry Molecular Biology/Structural Biology [q-bio.BM][SDV.BBM.BP] Life Sciences [q-bio]/Biochemistry Molecular Biology/Biophysics[SDV.AEN]Life Sciences [q-bio]/Food and Nutrition[SDV.BBM.BC] Life Sciences [q-bio]/Biochemistry Molecular Biology/Biochemistry [q-bio.BM]ComputingMilieux_MISCELLANEOUS[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry Molecular Biology/Biomolecules [q-bio.BM]
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Rapid odorant release in mammalian odour binding proteins facilitates their temporal coupling to odorant signals.

2010

 ; We have measured the effect of rat odorant-binding protein 1 on the rates of ligand uptake and liquid-to-air transfer rates with a set of defined odorous compounds. Comparison of observed rate constants (k(obs)) with data simulated over a wide range of different kinetic and thermodynamic regimes shows that the data do not agree with the previously held view of a slow off-rate regime (k(off) <0.0004 s(-1)). We propose that a rapid koff would be a necessary requirement for such a system, since slow odorant-release rates would result in significant decorrelation between the olfactory world and odour perception. (c) 2010 Elsevier Ltd. All rights reserved.

[SDV.BIO]Life Sciences [q-bio]/BiotechnologyKineticsAnalytical chemistryOlfactionAcetatesCalorimetryIn Vitro Techniques[ SDV.BA ] Life Sciences [q-bio]/Animal biologyLigandsReceptors OdorantDNA-binding proteinMass Spectrometry03 medical and health sciences0302 clinical medicineReaction rate constantStructural BiologyODORANT-BINDING PROTEINSAnimals[INFO.INFO-BT]Computer Science [cs]/BiotechnologyMolecular Biology030304 developmental biology0303 health sciencesChemistryTemporal couplingLigand[SDV.BA]Life Sciences [q-bio]/Animal biology[ SDV.BIO ] Life Sciences [q-bio]/BiotechnologyRecombinant ProteinsRatsSmellKineticsOdorantsBiophysicsOLFACTIONThermodynamics[ INFO.INFO-BT ] Computer Science [cs]/Biotechnology030217 neurology & neurosurgerypsychological phenomena and processesSignal TransductionJournal of molecular biology
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Applications of guanine quartets in nanotechnology and chemical biology

2019

Guanine and related nucleobases such as guanosine, deoxyguanosine and isoguanosine are notable molecular tools for designing functional supramolecular assemblies. This popularity originates in their ability to self-assemble via a unique topological pluralism — as isolated nucleobases, discrete macrocyclic quartets and virtually infinite linear ribbons — that endows them with a considerable functional versatility. Many programmes have been launched to fine-tune the chemical properties of guanine derivatives, to make them usable under different experimental conditions, such as in organic or aqueous environments, and responsive to external stimuli, such as ionic strength, pH, light or temperat…

[SDV.BIO]Life Sciences [q-bio]/Biotechnology[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry Molecular Biology/Structural Biology [q-bio.BM]010405 organic chemistryGuanineGeneral Chemical EngineeringChemical biologySupramolecular chemistryGuanosineNanotechnologyGeneral Chemistry010402 general chemistry01 natural sciences0104 chemical sciencesNucleobasechemistry.chemical_compound[CHIM.GENI]Chemical Sciences/Chemical engineeringchemistryGuanine-QuartetsDeoxyguanosineSoft matter[PHYS.PHYS.PHYS-CHEM-PH]Physics [physics]/Physics [physics]/Chemical Physics [physics.chem-ph]ComputingMilieux_MISCELLANEOUS
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New molecular aspects of regulation of mitochondrial activity by fenofibrate and fasting

2000

Abstract Fenofibrate and fasting are known to regulate several genes involved in lipid metabolism in a similar way. In this study measuring several mitochondrial enzyme activities, we demonstrate that, in contrast to citrate synthase and complex II, cytochrome c oxidase (COX) is a specific target of these two treatments. In mouse liver organelles, Western blot experiments indicated that mitochondrial levels of p43, a mitochondrial T3 receptor, and mitochondrial peroxisome proliferator activated receptor (mt-PPAR), previously described as a dimeric partner of p43 in the organelle, are increased by both fenofibrate and fasting. In addition, in PPARα-deficient mice, this influence was abolishe…

[SDV]Life Sciences [q-bio]Receptors Cytoplasmic and NuclearPeroxisome proliferator-activated receptorMitochondria LiverMitochondrionBiochemistryMice0302 clinical medicineFenofibrateStructural BiologyBIOLOGIE CELLULAIRECitrate synthaseFibrateReceptorComputingMilieux_MISCELLANEOUSMice Knockoutchemistry.chemical_classification0303 health sciencesFenofibratebiologyElectron Transport Complex IIFastingPeroxisomeDNA-Binding ProteinsSuccinate Dehydrogenase[SDV] Life Sciences [q-bio]OxidoreductasesDimerizationmedicine.drugPeroxisome proliferator activated receptormedicine.medical_specialtyBiophysicsCitrate (si)-Synthase[INFO] Computer Science [cs]Mitochondrial T3 receptorElectron Transport Complex IV03 medical and health sciencesMultienzyme ComplexesInternal medicineGeneticsmedicineAnimalsCytochrome c oxidase[INFO]Computer Science [cs]MitochondrionMolecular BiologyCrosses Genetic030304 developmental biologyOrganellesLipid metabolismCell BiologyMice Inbred C57BLEndocrinologychemistrybiology.protein030217 neurology & neurosurgeryTranscription Factors
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Fructose 2,6-bisphosphate as a signal for changing from sugar to lipid oxidation during flight in locusts

1986

AbstractFlight in locusts is initially powered mainly by carbohydrate but if flight is to be sustained, as in migration, the animals have to utilize fat as the predominant fuel. The molecular basis of this metabolic switch has not been identified. Fructose 2,6-bisphosphate is a potent activator of 6-phosphofructokinase (EC 2.7.1.11) purified from locust flight muscle. After the first few minutes of flight in the locust the concentration of fructose 2,6-bisphosphate in the flight muscle falls dramatically, which should lead to a decrease in the activity of 6-phosphofructokinase as part of the mechanism to conserve carbohydrate during prolonged flight.

animal structures6-phosphofructokinaseBiophysicsBiochemistrychemistry.chemical_compoundLipid oxidationStructural BiologyGeneticsGlycolysis(Locust flight muscle)SugarMolecular BiologyFructose 2biologyActivator (genetics)FructoseCell BiologyFat oxidationCarbohydratebiology.organism_classificationchemistryBiochemistryFructose 26-bisphosphate6-bisphosphateGlycolysisInsect migrationLocustFEBS Letters
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Functional characterization of the enhancer blocking element of the sea urchin early histone gene cluster reveals insulator properties and three esse…

2000

Insulator elements can be functionally identified by their ability to shield promoters from regulators in a position-dependent manner or their ability to protect adjacent transgenes from position effects. We have previously reported the identification of a 265 bp sns DNA fragment at the 3' end of the sea urchin H2A early histone gene that blocked expression of a reporter gene in transgenic embryos when placed between the enhancer and the promoter. Here we show that sns interferes with enhancer-promoter interaction in a directional manner. When sns is placed between the H2A modulator and the inducible tet operator, the modulator is barred from interaction with the basal promoter. However, th…

animal structuresenhancer blockingMolecular Sequence DataDNA FootprintingSettore BIO/11 - Biologia MolecolareBiologyRegulatory Sequences Nucleic AcidinsulatorBinding CompetitiveHistonesStructural BiologyTranscription (biology)Gene clustermicroinjectionAnimalsDeoxyribonuclease IH2A enhancerGene SilencingTransgenesEnhancerDownstream EnhancerPromoter Regions GeneticMolecular BiologyTranscription factorRepetitive Sequences Nucleic AcidSequence DeletionReporter geneBase SequenceActivator (genetics)PromoterDNAhistone genesMolecular biologyCell biologyDNA-Binding ProteinsEnhancer Elements GeneticMultigene FamilySea UrchinsProtein Binding
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Urate as effector for crustacean hemocyanins.

2004

biologyChemistryEffectormedicine.medical_treatmentAllosteric regulationGeneral Physics and AstronomyIsothermal titration calorimetryHemocyaninCell Biologybiology.organism_classificationCrustaceanUric Acidchemistry.chemical_compoundBiochemistryStructural BiologyCrustaceaHemocyaninsmedicineUric acidAnimalsGeneral Materials ScienceMicron (Oxford, England : 1993)
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