Search results for "Suberites"

showing 10 items of 135 documents

Silintaphin-1 - interaction with silicatein during structure-guiding bio-silica formation

2011

Silicateins are unique enzymes of sponges (phylum Porifera) that template and catalyze the polymerization of nanoscale silicate to siliceous skeletal elements. These multifunctional spicules are often elaborately shaped, with complex symmetries. They carry an axial proteinaceous filament, consisting of silicatein and the scaffold protein silintaphin-1, which guides silica deposition and subsequent spicular morphogenesis. In vivo, the synthesis of the axial filament very likely proceeds in three steps: (a) assembly of silicatein monomers to form one pentamer; (b) assembly of pentamers to form fractal-like structures; and finally (c) assembly of fractal-like structures to form filaments. The …

chemistry.chemical_classification0303 health sciencesbiologyStereochemistryPentamerSubstrate (chemistry)02 engineering and technologyCell BiologyPolymer021001 nanoscience & nanotechnologybiology.organism_classificationBiochemistryTetraethyl orthosilicateSuberites domunculaProtein filament03 medical and health scienceschemistry.chemical_compoundMonomerchemistryPolymerizationBiophysics0210 nano-technologyMolecular Biology030304 developmental biologyFEBS Journal
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Molecular/chemical ecology in sponges. Evidence for an adaptive antibacterial response in Suberites domuncola

2004

Sponges (Porifera) represent the evolutionary oldest metazoan phylum still extant today. They have developed a complex Bauplan, based on the existence of structural and regulatory molecules; many of these have been cloned and analyzed in the past years. The demosponge Suberites domuncula has been used as a suitable model to demonstrate that these animals not only possess an adaptive immune response on the level of cytokines, but also, as pointed out here, on the level of synthesis of bioactive alkyl-lipid derivatives. From specimens of S. domuncula the two lyso-PAF (platelet-activating factor) compounds, 1-O-hexadecyl-sn-glycero-3-phosphocholine and 1-O-octadecyl-sn-glycero-3-phosphocholine…

chemistry.chemical_classificationEcologyATP synthasebiologyAntibacterial ResponseAquatic Sciencebiology.organism_classificationAcquired immune systemMicrobiologySuberites domunculaSpongeEnzymeDemospongechemistryBiochemistrybiology.proteinlipids (amino acids peptides and proteins)Ecology Evolution Behavior and SystematicsFunction (biology)
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Biochemistry and cell biology of silica formation in sponges

2003

The main inorganic material forming the skeletal elements in Demospongiae as well as in Hexactinellida, the spicules, is amorphous silica. The spicules occur in the cytoplasm and the extracellular space and also in the nucleus (as silicate crystals) of some sponge cells; the function in the latter compartment is unknown. Recent evidence shows that the formation of spicules is mediated by the enzyme silicatein. The cDNA as well as the gene encoding this enzyme was cloned from Suberites domuncula. The recombinant silicatein catalyzes the syn- thesis of amorphous silicate using tetraethoxysilane as substrate. The enzyme is dependent on ferric iron. Silicatein also has proteolytic (cathepsin-li…

chemistry.chemical_classificationHistologyBiologybiology.organism_classificationSilicateCell biologySuberites domunculaMedical Laboratory Technologychemistry.chemical_compoundSpongeSponge spiculeEnzymechemistryBiochemistryCytoplasmGene expressionExtracellularAnatomyInstrumentationMicroscopy Research and Technique
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Synthesis of the neurotoxin quinolinic acid in apoptotic tissue from Suberites domuncula: cell biological, molecular biological and chemical analyses

2002

Sessile marine animals, such as sponges, are prone to infection by prokaryotic as well as by eukaryotic attacking organisms. In the present study we document for the first time that in tissue from sponges which underwent apoptosis, a toxic compound is produced which very likely controls the elimination of the dying tissue. The marine sponge Suberites domuncula develops in the field occasionally apoptotic tissue areas which are rapidly eliminated. In the present study apoptosis was induced in S. domuncula by exposing the specimens in aquaria to 5 µg/ml Dip or by maintaining the sponges for 3 - 5 days under non-aeration conditions. After that treatment only one eukaryotic epibiont, the mollus…

chemistry.chemical_classificationbiologyCell growthCellbiology.organism_classificationApplied Microbiology and BiotechnologyBioactive compoundMicrobiologySuberites domunculachemistry.chemical_compoundSpongemedicine.anatomical_structureEnzymechemistryBiochemistryApoptosismedicineQuinolinic acid
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Immediate early response of the marine sponge Suberites domuncula to heat stress: Reduction of trehalose and glutathione concentrations and glutathio…

1997

The marine sponge Suberites domuncula was used to identify early markers for thermal stress. Cubes from sponges have been kept for 30 min at 31°C (10 °C higher than the ambient temperature). After this treatment the sponge cubes were kept again at 21°C. To demonstrate that the animals reacted to the elevated temperature, the expression of heat shock protein (HSP) was determined. Using an antibody raised against HSP70, it was found by Western blotting that the animals specifically express a 45 kDa polypeptide after heat treatment. It was shown that even after 10 min of heat treatment the steady-state concentration of trehalose drops by 40% from a base level of 13 nmol/mg protein. The activit…

chemistry.chemical_classificationbiologyGlutathioneAquatic Sciencebiology.organism_classificationTrehaloseEnzyme assayHsp70Suberites domunculachemistry.chemical_compoundEnzymechemistryBiochemistryHeat shock proteinbiology.proteinTrehalasesponge; Suberites domuncula; heat shock; trehalose; glutathione; S-transferaseEcology Evolution Behavior and Systematics
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Molecular response to TBT stress in marine sponge Suberites domuncula: proteolytical cleavage and phosphorylation of KRS_SD protein kinase

2003

Abstract Marine sponges as sessile filter feeders are inevitably under a constant influence of changes in their environment. Mediation of extracellular signals and regulation of cellular response to environmental stress is a key function of cellular protein kinases. Expression, proteolytical cleavage and phosphorylation of stress-responsive KRS_SD protein kinase, in control and tributyl-tin (TBT) treated sponges were investigated. In control sponge, two KRS_SD proteins were expressed: KRS_SD1 (54 kDa) corresponding to KRS_SD calculated molecular weight, and KRS_SD2 (50 kDa). Exposure of sponges to TBT resulted in alteration of KRS_SD1 and KRS_SD2 expression levels and their phosphorylation …

chemistry.chemical_classificationbiologymedicine.diagnostic_testKinaseProteolysisKRS_SD; marine sponge; protein kinase; stress; Tributyl-tinAquatic Sciencebiology.organism_classificationCleavage (embryo)Molecular biologySuberites domunculaEnzymeBiochemistrychemistrymedicineExtracellularPhosphorylationProtein kinase AEcology Evolution Behavior and SystematicsJournal of Experimental Marine Biology and Ecology
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Expression of silicatein and collagen genes in the marine sponge Suberites domuncula is controlled by silicate and myotrophin

2000

The major skeletal elements in the (Porifera) sponges, are spicules formed from inorganic material. The spicules in the Demospongiae class are composed of hydrated, amorphous silica. Recently an enzyme, silicatein, which polymerizes alkoxide substrates to silica was described from the sponge Tethya aurantia. In the present study the cDNA encoding silicatein was isolated from the sponge Suberites domuncula. The deduced polypeptide comprises 331 amino acids and has a calculated size of Mr 36 306. This cDNA was used as a probe to study the potential role of silicate on the expression of the silicatein gene. For these studies, primmorphs, a special form of aggregates composed of proliferating c…

chemistry.chemical_classificationeducation.field_of_studyBiologybiology.organism_classificationBiochemistrySilicateMicrobiologyAmino acidSuberites domunculaMyotrophinSpongechemistry.chemical_compoundSponge spiculechemistryBiochemistryComplementary DNAeducationSuberitesEuropean Journal of Biochemistry
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S-type lectins occur also in invertebrates: high conservation of the carbohydrate recognition domain in the lectin genes from the marine sponge Geodi…

1993

The marine sponge Geodia cydonium contains several lectins. The main component, called lectin-1, is composed of three to four identical subunits. The subunits of the lectins were cloned from a cDNA library; two clones were obtained. From the deduced aa sequence of one clone, LECT-1, a mol. wt of 15,313 Da is calculated; this value is in good agreement with mass spectrometric analysis of 15,453 +/- 25 Da. The sequence of another clone, LECT-2, was analysed and the aa sequence was deduced (15,433 Da). The two subunits have a framework sequence of 38 conserved aa which are characteristic for the carbohydrate-binding site of vertebrate S-type lectins. Clustering of lectin sequences of various s…

clone (Java method)GalectinsBlotting WesternMolecular Sequence DataBiochemistryChromatography AffinityMass SpectrometryLectinsAnimalsAmino Acid SequenceCloning MolecularPeptide sequenceGeneGalectinCloningbiologyBase SequencecDNA libraryLectinDNAbiology.organism_classificationPoriferaSuberites domunculaBiochemistrybiology.proteinElectrophoresis Polyacrylamide GelGlycobiology
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Origin of the Metazoan Immune System: Identification of the Molecules and Their Functions in Sponges

2011

SYNOPSIS. During the evolutionary transition to Metazoa, cell-cell- as well as cell-matrix recognition molecules have been formed, which made a further step in evolution possible, the establishment of an immune system. Sponges [Porifera] represent the oldest still extant metazoan phylum and consequently testify to major features of the common metazoan ancestor, the Urmetazoa. Most studies with respect to evolution and phylogeny in sponges have been performed with the marine demosponges Suberites domuncula and Geodia cydonium. These animals possess effective defense systems against microbes and parasites which involve engulfment of bacteria into specific cells, but also signal transduction p…

education.field_of_studyPhylumEcologyPlant ScienceBiologybiology.organism_classificationCell biologySuberites domunculaTransplantationSpongeImmune systemPhylogeneticsAllograft inflammatory factor 1Animal Science and ZoologyeducationTranscription factorIntegrative and Comparative Biology
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Origin of Insulin Receptor-Like Tyrosine Kinases in Marine Sponges

1999

One autapomorphic character restricted to all Metazoa including Porifera [sponges] is the existence of transmembrane receptor tyrosine kinases (RTKs). In this study we screened for molecules from one subfamily within the superfamily of the insulin receptors. The subfamily includes the insulin receptors (InsR), the insulin-like growth factor I receptors, and the InsR-related receptors--all found in vertebrates--as well as the InsR-homolog from Drosophila melanogaster. cDNAs encoding putative InsRs were isolated from the hexactinellid sponge Aphrocallistes vastus, the demosponge Suberites domuncula, and the calcareous sponge Sycon raphanus. Phylogenetic analyses of the catalytic domains of th…

endocrine systemDNA ComplementarySubfamilyMolecular Sequence DataReceptor tyrosine kinaseEvolution MolecularMiceDemospongeCatalytic DomainBotanyAnimalsHumansAmino Acid SequenceSycon raphanusCloning MolecularPhylogenyCephalochordateBase SequenceSequence Homology Amino Acidbiologygeodia cydonium; adhesion receptors; evolutionnutritional and metabolic diseasesSequence Analysis DNAbiology.organism_classificationReceptor InsulinPoriferaRatsSuberites domunculaInsulin receptorSpongeBiochemistrybiology.proteinGeneral Agricultural and Biological Scienceshormones hormone substitutes and hormone antagonistsThe Biological Bulletin
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