Search results for "Suberites"

showing 10 items of 135 documents

Increased gene expression of a cytokine-related molecule and profilin after activation of Suberites domuncula cells with xenogeneic sponge molecule(s)

2000

Porifera (sponges) constitute the lowest metazoan phylum, Experiments examined whether sponges can recognize self/nonself molecules. Cells from the marine sponge Suberites domuncula were incubated with membranes from either S. domuncula or another marine sponge, Geodia cydonium, as well as with recombinant alpha-integrin from G. cydonium. The cells responded immediately with a rise of intracellular Ca2+ ([Ca-i(2+)]) if they were treated with membranes from G. cydonium but not after treatment by those from S. domuncula. This change of [Ca-i(2+)] was also recorded with G. cydonium alpha-integrin. In parallel, the expression of two genes was strongly upregulated; one codes for a cytokine-relat…

Integrinsmedicine.medical_treatmentMolecular Sequence DataGene ExpressionPolymerase Chain ReactionMicrobiologylaw.inventionProfilinsContractile ProteinsAntigenlawAntigens HeterophileGene expressionGeneticsmedicineAnimalsAmino Acid SequenceCloning MolecularMolecular Biologygeodia-cydonium; marine sponge; allogeneic recognition; immune recognition; adhesionMembranesbiologyMicrofilament ProteinsCell BiologyGeneral Medicinebiology.organism_classificationCell biologyPoriferaSuberites domunculaSpongeCytokineEchinodermProfilinbiology.proteinRecombinant DNACytokinesCalciumSequence Alignment
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Cultivation of primmorphs from the marine sponge Suberites domuncula: morphogenetic potential of silicon and iron.

2002

Abstract Marine demosponges (phylum Porifera) are rich sources for potent bioactive compounds. With the establishment of the primmorph system from sponges, especially from Suberites domuncula , the technology to cultivate sponge cells in vitro improved considerably. This progress was possible after the elucidation that sponges are provided with characteristic metazoan cell adhesion receptors and extracellular matrix molecules which allow their cells a positioning in a complex organization pattern. This review summarizes recent data on the cultivation of sponges in aquaria and—with main emphasis—of primmorphs in vitro. It is outlined that silicon and Fe(+++) contribute substantially to the f…

IronCell Culture TechniquesBioengineeringApplied Microbiology and BiotechnologyBioreactorsSpecies SpecificityFood supplyMorphogenesisAnimalsGrowth SubstancesEcosystemCell AggregationPhylum PoriferabiologyEcologySilicatesGeneral MedicineExtracellular matrix moleculesbiology.organism_classificationCanal systemCell biologyPoriferaSuberites domunculaSpongeGene Expression RegulationFerritinsCell DivisionBiotechnologySuberitesJournal of biotechnology
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Flashing light signaling circuit in sponges: Endogenous light generation after tissue ablation in Suberites domuncula

2010

The skeleton of siliceous sponges (phylum Porifera: classes Demospongiae and Hexactinellida), composed of tightly interacting spicules that assemble to a genetically fixed scaffold, is formed of bio-silica. This inorganic framework with the quality of quartz glass has been shown to operate as light waveguide in vitro and very likely has a similar function in vivo. Furthermore, the molecular toolkit for endogenous light generation (luciferase) and light/photon harvesting (cryptochrome) has been identified in the demosponge Suberites domuncula. These three components of a light signaling system, spicules—luciferase—cryptochrome, are concentrated in the surface layers (cortex) of the poriferan…

LightBlotting WesternBiochemistryDemospongeCryptochromeCortex (anatomy)BotanymedicineAnimalsLuciferaseLuciferasesMolecular BiologyTranscription factorbiologyReverse Transcriptase Polymerase Chain ReactionCell BiologyBlotting Northernbiology.organism_classificationImmunohistochemistryCell biologyCryptochromesSuberites domunculaSpongemedicine.anatomical_structureLight emissionSuberitesSignal TransductionJournal of Cellular Biochemistry
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Potential biological role of laccase from the sponge Suberites domuncula as an antibacterial defense component

2014

Abstract Background Laccases are copper-containing enzymes that catalyze the oxidation of a wide variety of phenolic substrates. Methods We describe the first poriferan laccase from the marine demosponge Suberites domuncula. Results This enzyme comprises three characteristic multicopper oxidase homologous domains. Immunohistological studies revealed that the highest expression of the laccase is in the surface zone of the animals. The expression level of the laccase gene is strongly upregulated after exposure of the animals to the bacterial endotoxin lipopolysaccharide. To allow the binding of the recombinant enzyme to ferromagnetic nanoparticles, a recombinant laccase was prepared which con…

LipopolysaccharidesMolecular Sequence DataBiophysicsMulticopper oxidaseFerric CompoundsLigninBiochemistryMichaelis–Menten kineticsGene Expression Regulation EnzymologicSubstrate Specificitychemistry.chemical_compoundEscherichia coliAnimalsLigninAmino Acid SequenceMolecular BiologyPhylogenyLaccasechemistry.chemical_classificationDose-Response Relationship DrugSequence Homology Amino AcidbiologyReverse Transcriptase Polymerase Chain ReactionChemistryLaccaseHydrazonesSubstrate (chemistry)biology.organism_classificationRecombinant ProteinsAnti-Bacterial AgentsUp-RegulationSuberites domunculaKineticsEnzymeBiochemistryBiocatalysisNanoparticlesSuberitesOxidation-ReductionIron oxide nanoparticlesBiochimica et Biophysica Acta (BBA) - General Subjects
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Histocompatibility reaction in tissue and cells of the marine sponge Suberites domuncula in vitro and in vivo: central role of the allograft inflamma…

2001

Sponges (Porifera) are the phylogenetically oldest still extant metazoan phylum. Recently elements of their immune system have been cloned and analyzed, primarily from the demosponges Suberites domuncula and Geodia cydonium. By differential display, two genes were identified in S. domuncula, whose translation products are involved in graft rejection/fusion: the allograft inflammatory factor (AIF-1) and the Tcf-like transcription factor (TCF). Since the AIF-1 and TCF genes are upregulated in vivo after tissue transplantation, especially in allografts, we investigated whether this reaction can be monitored in vitro. Therefore, the autogeneic and the allogeneic mixed sponge cell reaction (MSCR…

Lymphoid Enhancer-Binding Factor 1ImmunologyMolecular Sequence DataTacrolimusdemosponges; Suberites domuncula; Geodia cydonium; AIF-1(allograft inflamatory factor 1); TCFMicrobiologyImmune systemGeneticsAnimalsAmino Acid SequenceCloning MoleculareducationTranscription factorPhylogenyeducation.field_of_studyDifferential displaybiologyCalcium-Binding Proteinsbiology.organism_classificationIn vitroRecombinant ProteinsCell biologyHistocompatibilityPoriferaSuberites domunculaDNA-Binding ProteinsSpongeGene Expression RegulationHMG-Box DomainsHistocompatibilityAllograft inflammatory factor 1Transcription Factors
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Molecular markers for germ cell differentiation in the demosponge Suberites domuncula

2004

Sponges (phylum Porifera) are simple metazoans for which no molecular information on gametogenesis and larval development is available. To support the current study, it was confirmed by histology that oocytes and larvae were produced by the demosponge Suberites domuncula. Three genes/expressed products from S. domuncula whose expression correlated with sexual reproduction were identified and characterized (they are used here as marker genes): i) a receptor tyrosine kinase (RTK) with sequence similarity in the tyrosine kinase domain to fibroblast growth factor receptors; ii) the sex-determining protein FEM1 and iii) the sperm associated antigen (SAA) of triploblasts. Antibodies against the e…

MaleEmbryologyMolecular Sequence DataReceptor tyrosine kinaseDemospongemedicineAnimalsAmino Acid SequenceAntigensPhylogenyGametogenesisCaenorhabditis elegansGeneticsBase SequenceSequence Homology Amino AcidbiologyfungiGene Expression Regulation DevelopmentalReceptor Protein-Tyrosine KinasesCell DifferentiationDNASex Determination Processesbiology.organism_classificationSpermatozoaCell biologySuberites domunculamedicine.anatomical_structureFibroblast growth factor receptorOocytesbiology.proteinFemaleSeasonsSuberitesTyrosine kinaseBiomarkersGerm cellDevelopmental Biology
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Bioengineering of the silica-polymerizing enzyme silicatein-alpha for a targeted application to hydroxyapatite.

2009

Since its discovery, numerous biotechnological approaches have aimed to explore the silica-polymerizing catalytic activity of the enzyme silicatein. In vivo, silicatein catalyzes polymerization of amorphous silica nanospheres from soluble precursors. In vitro, it directs the formation of nanostructured biosilica. This is of interest for various applications that strive to benefit from both the advantages of the biological system (i.e., silica synthesis under physiological conditions) and the cell mineralization-stimulating effect of biosilica. However, so far immobilization of silicatein has been hampered by the complex multistep procedure required. In addition, the chemical surface modific…

Materials scienceSilicon dioxidePolymersSus scrofaBiomedical EngineeringNanofibersGlutamic AcidBioengineeringPlasma protein bindingBiochemistryBiomaterialschemistry.chemical_compoundTissue engineeringAnimalsBone regenerationMolecular Biologychemistry.chemical_classificationbiologyGeneral Medicinebiology.organism_classificationEnzymes ImmobilizedSilicon DioxideCathepsinsEnzymeDurapatitechemistryBiochemistryNanofiberCrystallizationSuberitesBiotechnologyBiomedical engineeringBiomineralizationSuberitesProtein BindingActa biomaterialia
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Origin of metazoan stem cell system in sponges: first approach to establish the model (Suberites domuncula).

2003

Abstract It is established that Porifera (sponges) represent the earliest phylum which branched off from the common ancestor of all multicellular animals, the Urmetazoa. In the present study, the hypothesis is tested if, during this transition, pluripotent stem cells were formed which are provided—similar to the totipotent cells (archaeocytes/germ cells)—with a self-renewal capacity. As a model system, primmorphs from the sponge Suberites domuncula were used. These 3D-cell aggregates were cultivated in medium (RPMI 1640/seawater) either lacking silicate and ferric iron or in medium which was supplemented with these ‘morphogenetic’ factors. As molecular markers for the potential existence of…

MesodermMolecular Sequence DataBioengineeringFerric CompoundsEvolution MolecularSequence Analysis ProteinmedicineAnimalsAmino Acid SequenceNogginInduced pluripotent stem cellMolecular BiologyGeneCells CulturedPhylogenybiologySequence Homology Amino AcidGene Expression ProfilingSilicatesStem CellsMesenchymal stem cellGene Expression Regulation DevelopmentalMembrane ProteinsProteinsAnatomybiology.organism_classificationCell biologyPoriferaSuberites domunculaSpongemedicine.anatomical_structureModels AnimalStem cellCarrier ProteinsBiotechnologyBiomolecular engineering
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Oxygen as a morphogenic factor in sponges: expression of a tyrosinase gene in the sponge Suberites domuncula

2004

Sponges live in a symbiotic relationship with microorganisms, especially bacteria. Here we show, using the demosponge Suberites domuncula as a model, that the sponge expresses the enzyme tyrosinase which synthesizes diphenols from monophenolic compounds. It is assumed that these products serve as carbon source for symbiotic bacteria to grow.

MicroorganismTyrosinaseMolecular Sequence DataGeneral Physics and AstronomyMicrobiologyDemospongeStructural BiologyAnimalsHumansGeneral Materials ScienceAmino Acid SequenceSymbiosisPhylogenychemistry.chemical_classificationbiologyMonophenol MonooxygenaseCell Biologybiology.organism_classificationPoriferaOxygenSuberites domunculaSpongeEnzymechemistryBiochemistrySequence AlignmentBacteriaSymbiotic bacteriaMicron
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Mitochondrial genome of Suberites domuncula: palindromes and inverted repeats are abundant in non-coding regions.

2007

The 26,300-nucleotide sequence of the mitochondrial DNA (mtDNA) molecule of the demosponge Suberites domuncula (Olivi, 1792), the largest in size yet found in Porifera, has been determined. We describe the second hadromerid sponge mitochondrial genome that contains the same set of 41 genes as the hadromerid sponge Tethya actinia, including trnMe(cau), trnI2(cau), trnR2(ucu), and atp9, all of which are transcribed in the same direction. Furthermore, rRNA genes for the small and large ribosomal subunit are very long, rns is indeed the longest among Metazoa (1833 bp). Intergenic regions (IGR) comprise about 25% of S. domuncula mtDNA and include numerous direct and inverted repeats, as well as …

Mitochondrial DNAInverted repeatMolecular Sequence DataSuberites ficusDNA MitochondrialIntergenic regionRNA TransferSpecies SpecificityLarge ribosomal subunitSequence Homology Nucleic AcidGeneticsAnimalsGenePhylogenyRepetitive Sequences Nucleic AcidGeneticsPorifera ; Hadromerida ; mtDNA ; mitochondrial evolution ; polymorphismsBase CompositionbiologyBase SequenceGenetic VariationGeneral MedicineRibosomal RNAbiology.organism_classificationSuberites domunculaGenome MitochondrialDNA IntergenicSuberitesGene
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