Search results for "Systematics"

showing 10 items of 6702 documents

Evidence for spatiotemporal shift in demersal fishery management priority areas in the western Mediterranean

2022

14 pages, 10 figures, 2 tables, 1 appendix

QH301 BiologySpecies distributionMarine Protected AreasAquatic ScienceFootprintQH301Species levelCentro Oceanográfico de VigoMediterranean SeaDynamismPesqueríasQA MathematicsSDG 14 - Life Below WaterSH Aquaculture. Fisheries. AnglingSHQAEcology Evolution Behavior and SystematicsBayesian modelsMCCCommunity level3rd-DASPriority areasFisheryIdentification (information)GeographySurvey data collection
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Ecological characteristics of pre-imaginal stages of blackflies (diptera: simuliidae) in Southern England

2021

Data on pre-imaginal stages of blackflies obtained in southern England during the summer and early autumn of 2020 were supplemented by additional surveys and analysed in relation to environmental factors. Fourteen taxa from 29 locations were recorded. Of these, seven are of medical and/or veterinary importance: Simulium (Wilhelmia) equinum (Linnaeus, 1758), S. (Boophthora) erythrocephalum (De Geer, 1776), S. (Simulium) intermedium Roubaud, 1906 sensu lato (s.l., a complex of species), S. (W.) lineatum (Meigen, 1804), S. (S.) morsitans Edwards, 1915, S. (S.) noelleri Friederichs, 1920 and S. (S.) ornatum (Meigen, 1818) s.l. Analyses of a variety of environmental factors recorded at the insec…

QLEcologyInsect ScienceAquatic ScienceBiologyGFEcology Evolution Behavior and Systematics
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Diet of the insectivorous bat 'Pipistrellus nathusii' during autumn migration and summer residence

2013

Migration is widespread among vertebrates, yet bat migration has received little attention and only in the recent decades has a better understanding of it been gained. Migration can cause significant changes in behaviour and physiology, due to increasing energy demands and aerodynamic constraints. Dietary shifts, for example, have been shown to occur in birds before onset of migration. For bats, it is not known if a change in diet occurs during migration, although breeding season–related dietary preference has been documented. It is known that a diet rich in fats and the accumulation of fat deposits do increase the flight range of migratory bats. Some bat species can be regarded as long-dis…

QLInsectabiologyEcologyRange (biology)High-Throughput Nucleotide SequencingInsectivoreSequence Analysis DNAbiology.organism_classificationLatviaPredationDietLepidoptera genitaliaPipistrellus nathusiiHabitatChiropteraGeneticsSeasonal breederAnimalsAnimal MigrationSeasonsOrnithologyEcology Evolution Behavior and SystematicsEcosystem
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2-Aminoethylphosphonic acid is the main phosphorus compound in locust hemolymph

1991

Qualitative analysisbiologyBiochemistryBotanyHemolymphGeneral MedicineAminoethylphosphonic Acidbiology.organism_classificationEcology Evolution Behavior and SystematicsLocustAnalyse qualitativeAcrididaeNaturwissenschaften
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Predicting the stream macroinvertebrate fauna across regional scales: influence of geographical extent on model performance

2008

AbstractPredictive modeling is used increasingly often in freshwater bioassessment. These models are routinely applied across broad geographical areas, yet the influence of spatial extent on model performance has not been assessed directly. We examined the influence of changing geographical extent on the performance of River InVertebrate Prediction and Classification System (RIVPACS)–type predictive models of benthic macroinvertebrates in boreal headwater streams representative of reference conditions. Separate models were constructed for 2 hierarchical extents: within ecoregions (middle boreal and north boreal) and across ecoregions. We assessed the accuracy and precision of the models usi…

RIVPACSTaxonBorealMean squared errorEcologyBenthic zoneFaunaEnvironmental scienceSTREAMSPhysical geographyAquatic ScienceEcology Evolution Behavior and SystematicsInvertebrateJournal of the North American Benthological Society
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Simultaneous occurrence of covert infections with small RNA viruses in the lepidopteran Spodoptera exigua

2014

Viral covert infections in invertebrates have been traditionally attributed to sublethal infections that were not able to establish an acute infection. Recent studies are revealing that, although true for some viruses, other viruses may follow the strategy of establishing covert or persistent infections without producing the death of the host. Recently, and due to the revolution in the sequencing technologies, a large number of viruses causing covert infections in all type of hosts have been identified.The beet armyworm, Spodoptera exigua (Lepidoptera: Noctuidae) is a worldwide pest that causes significant losses to agricultural and ornamental plant industries. In a previous project we used…

RNA virusvirusesGenome ViralSpodopteraPersistent infectionVirusVirus morphologySpodoptera exiguaExiguaCovert infectionsAnimalsRNA VirusesEcology Evolution Behavior and SystematicsPhylogenybiologyHost (biology)IflavirusfungiPicornaviralesRNA virusbiology.organism_classificationVirologyIflaviridaeHost-Pathogen InteractionsPicornaviralesHorizontal transmission
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Exceptional Heterogeneity in Viral Evolutionary Dynamics Characterises Chronic Hepatitis C Virus Infection.

2016

The treatment of HCV infection has seen significant progress, particularly since the approval of new direct-acting antiviral drugs. However these clinical achievements have been made despite an incomplete understanding of HCV replication and within-host evolution, especially compared with HIV-1. Here, we undertake a comprehensive analysis of HCV within-host evolution during chronic infection by investigating over 4000 viral sequences sampled longitudinally from 15 HCV-infected patients. We compare our HCV results to those from a well-studied HIV-1 cohort, revealing key differences in the evolutionary behaviour of these two chronic-infecting pathogens. Notably, we find an exceptional level o…

RNA viruses0301 basic medicineMaleHepacivirusHIV InfectionsHepacivirusPathology and Laboratory Medicinemedicine.disease_causeVirus ReplicationHepatitis0302 clinical medicineImmunodeficiency VirusesMedicine and Health Sciences2.2 Factors relating to the physical environmentChronicAetiologylcsh:QH301-705.5Data Managementeducation.field_of_studybiologyHepatitis C virusLiver Diseasevirus diseasesHepatitis C3. Good healthPhylogeneticsInfectious DiseasesMedical MicrobiologyViral PathogensViral evolutionVirusesEvolutionary RateHIV/AIDS030211 gastroenterology & hepatologyFemalePathogensInfectionResearch Articlelcsh:Immunologic diseases. AllergyComputer and Information SciencesEvolutionary ProcessesEvolutionHepatitis C virusPopulationChronic Liver Disease and CirrhosisImmunologyMicrobiologyViral EvolutionVirusEvolution Molecular03 medical and health sciencesHepatitis - CVirologyRetrovirusesGeneticsmedicineHumansEvolutionary SystematicsEvolutionary dynamicseducationMicrobial PathogensMolecular BiologyTaxonomyEvolutionary BiologyFlavivirusesPopulation BiologyLentivirusOrganismsBiology and Life SciencesHIVMolecularHepatitis C Chronicbiology.organism_classificationVirologyHepatitis virusesOrganismal EvolutionViral ReplicationChronic infection030104 developmental biologyEmerging Infectious Diseaseslcsh:Biology (General)Viral replicationMicrobial EvolutionImmunologyHIV-1Parasitologylcsh:RC581-607Digestive DiseasesPopulation GeneticsFollow-Up Studies
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An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides

2018

Infection with human BK polyomavirus, a small double-stranded DNA virus, potentially results in severe complications in immunocompromised patients. Here, we describe the in vivo variability and evolution of the BK polyomavirus by deep sequencing. Our data reveal the highest genomic evolutionary rate described in double-stranded DNA viruses, i.e., 10−3–10−5 substitutions per nucleotide site per year. High mutation rates in viruses allow their escape from immune surveillance and adaptation to new hosts. By combining mutational landscapes across viral genomes with in silico prediction of viral peptides, we demonstrate the presence of significantly more coding substitutions within predicted cog…

RNA viruses0301 basic medicineMutation ratePhysiologyvirusesUrinePathology and Laboratory Medicinemedicine.disease_causeBiochemistryMedicine and Health SciencesBiology (General)Amino AcidsGenome EvolutionPhylogenyData ManagementMutationOrganic CompoundsHigh-Throughput Nucleotide SequencingPhylogenetic AnalysisDNA virusGenomicsBody FluidsBK virusPhylogeneticsChemistryMedical MicrobiologyViral PathogensViral evolutionVirusesPhysical SciencesEvolutionary RatePathogensAnatomyResearch ArticleComputer and Information SciencesEvolutionary ProcessesQH301-705.5ImmunologyGenome ViralHLA-C AntigensBiologyMicrobiologyMolecular EvolutionViral EvolutionVirusDeep sequencing03 medical and health sciencesVirologyGeneticsmedicineHumansEvolutionary SystematicsMicrobial PathogensMolecular BiologyTaxonomyEvolutionary BiologyPolyomavirus InfectionsOrganic ChemistryOrganismsChemical CompoundsBiology and Life SciencesComputational BiologyProteinsOrgan TransplantationRC581-607030112 virologyVirologyOrganismal EvolutionPeptide FragmentsPolyomaviruses030104 developmental biologyAmino Acid SubstitutionBK VirusMicrobial EvolutionMutationParasitologyImmunologic diseases. AllergyDNA virusesPolyomavirus Infections
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First Data on the Molecular Phylogeography of Scincid Lizards of the Genus Mabuya

2000

A 487-bp fragment of the mitochondrial 16S rRNA gene was sequenced in 26 species of the circumtropical lizard genus Mabuya and used to analyze phylogenetic relationships within the genus. The species from Africa and Madagascar formed a monophyletic group relative to the included Asian and South American taxa. The Malagasy species included (M. elegans, M. cf. dumasi, and M. comorensis) did not appear as a monophylum. Combined and separate analysis of the 16S data and additional sequences of the mitochondrial 12S rRNA, ND4, and cytochrome b genes (a total of 2255 bp) in one Asian, two Malagasy, and two African species also did not result consistently in a monophyletic grouping of the Malagasy…

RNA MitochondrialMabuyaZoologyMonophylyGenusRNA Ribosomal 16Sbiology.animalMadagascarGeneticsAnimalsMolecular BiologyPhylogenyEcology Evolution Behavior and SystematicsbiologyPhylogenetic treeLizardCytochrome bLizardsNADH DehydrogenaseEmigration and ImmigrationCytochrome b Groupbiology.organism_classificationBiological EvolutionPhylogeographyTaxonRNA RibosomalAfricaRNAMolecular Phylogenetics and Evolution
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Invasive and native populations of common ragweed exhibit strong tolerance to foliar damage.

2013

8 pages; International audience; Tolerance and resistance are defence strategies evolved by plants to cope with damage due to herbivores. The introduction of exotic species to a new biogeographical range may alter the plant herbivore interactions and induce selection pressures for new plant defence strategies with a modified resource allocation. To detect evolution in tolerance to herbivory in common ragweed, we compared 3 native (North America) and 3 introduced (France) populations, grown in a common garden environment. We explored the effect of leaf herbivory on plant vegetative and reproductive traits. Plants were defoliated by hand, simulating different degrees of insect grazing by remo…

RagweedHerbivore[ SDE.BE ] Environmental Sciences/Biodiversity and EcologybiologyResistance (ecology)fungiBiological pest controlfood and beveragesIntroduced speciesbiology.organism_classificationInvasive speciesAgronomyDefoliationShootFitness[ SDV.EE.IEO ] Life Sciences [q-bio]/Ecology environment/SymbiosisCompensatory growth[SDE.BE]Environmental Sciences/Biodiversity and EcologySimulated herbivoryEcology Evolution Behavior and SystematicsAmbrosia artemisiifoliaFunctional traits[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/SymbiosisAmbrosia artemisiifolia
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