Search results for "TLE"

showing 10 items of 2417 documents

Effect of Cholesterol on Electrostatics in Lipid−Protein Films of a Pulmonary Surfactant

2010

We report the changes in the electrical properties of the lipid-protein film of pulmonary surfactant produced by excess cholesterol. Pulmonary surfactant (PS) is a complex lipid-protein mixture that forms a molecular film at the interface of the lung's epithelia. The defined molecular arrangement of the lipids and proteins of the surfactant film gives rise to the locally highly variable electrical surface potential of the interface, which becomes considerably altered in the presence of cholesterol. With frequency modulation Kelvin probe force microscopy (FM-KPFM) and force measurements, complemented by theoretical analysis, we showed that excess cholesterol significantly changes the electri…

Static ElectricityAnalytical chemistryNanoparticleMicroscopy Atomic ForcePulmonary surfactantMolecular filmStatic electricityElectrochemistryAnimalsGeneral Materials ScienceFiberSpectroscopyKelvin probe force microscopeChemistryProteinsMembranes ArtificialPulmonary SurfactantsSurfaces and InterfacesLipid MetabolismCondensed Matter PhysicsElectrostaticsLipidsCholesterolMembraneBiophysicsCattleLangmuir
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Delay in claim settlement and ruin probability approximations

1995

We introduce a general risk model for portfolios with delayed claims which is a natural extension of the classical Poisson model. We investigate ruin problems for different premium principles and provide approximations for the ruin probability. We conclude with some specific models, for example, for IBNR portfolios and portfolios where the pay-off process depends on the claim size.

Statistics and ProbabilityEconomics and EconometricsActuarial scienceMathematics::Optimization and ControlExtension (predicate logic)Ruin theorysymbols.namesakeRisk modelComputer Science::Computational Engineering Finance and SciencesymbolsPoisson regressionStatistics Probability and UncertaintySettlement (litigation)Mathematical economicsMathematicsScandinavian Actuarial Journal
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The smallest singular value of a shifted $d$-regular random square matrix

2017

We derive a lower bound on the smallest singular value of a random d-regular matrix, that is, the adjacency matrix of a random d-regular directed graph. Specifically, let $$C_1<d< c n/\log ^2 n$$ and let $$\mathcal {M}_{n,d}$$ be the set of all $$n\times n$$ square matrices with 0 / 1 entries, such that each row and each column of every matrix in $$\mathcal {M}_{n,d}$$ has exactly d ones. Let M be a random matrix uniformly distributed on $$\mathcal {M}_{n,d}$$ . Then the smallest singular value $$s_{n} (M)$$ of M is greater than $$n^{-6}$$ with probability at least $$1-C_2\log ^2 d/\sqrt{d}$$ , where c, $$C_1$$ , and $$C_2$$ are absolute positive constants independent of any other parameter…

Statistics and ProbabilityIdentity matrixAdjacency matrices01 natural sciencesSquare matrixCombinatorics010104 statistics & probabilityMatrix (mathematics)Mathematics::Algebraic GeometryFOS: MathematicsMathematics - Combinatorics60B20 15B52 46B06 05C80Adjacency matrix0101 mathematicsCondition numberCondition numberMathematicsRandom graphsRandom graphLittlewood–Offord theorySingularity010102 general mathematicsProbability (math.PR)InvertibilityRegular graphsSingular valueSmallest singular valueAnti-concentrationSingular probabilitySparse matricesCombinatorics (math.CO)Statistics Probability and UncertaintyRandom matricesRandom matrixMathematics - ProbabilityAnalysis
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Influence of inorganic pyrophosphate on the kinetics of muscle pyruvate kinase: a simple nonallosteric feedback model.

2002

Potassium pyrophosphate was used instead of ATP as a model ligand for magnesium cation for the study of effector influence on the kinetics of pyruvate kinase muscle isozyme M1. The pyruvate kinase activation by low concentration of pyrophosphate and inhibition by high concentration of pyrophosphate was considered to be the result of reversible reactions of magnesium cation with pyrophosphate, ADP, ATP, and PEP. The apparent Km and Vm or in some cases the pseudo-first order reaction rate constant (instead of Km and Vm) of pyruvate kinase at any given pyrophosphate concentration were analysed as a function of concentration of free magnesium cation and its complexes with all ligands present in…

Statistics and ProbabilityInorganic chemistryPyruvate Kinasechemistry.chemical_elementIn Vitro TechniquesPyrophosphateModels BiologicalGeneral Biochemistry Genetics and Molecular BiologyReversible reactionFeedbackPhosphoenolpyruvatechemistry.chemical_compoundReaction rate constantAdenosine TriphosphateAnimalsMagnesiumEnzyme kineticsL-Lactate DehydrogenaseMagnesiumApplied MathematicsMusclesSubstrate (chemistry)General MedicineDiphosphatesIsoenzymesKineticschemistryBiochemistryModeling and SimulationCattleSteady state (chemistry)Pyruvate kinaseBio Systems
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A parallel and sensitive software tool for methylation analysis on multicore platforms.

2015

Abstract Motivation: DNA methylation analysis suffers from very long processing time, as the advent of Next-Generation Sequencers has shifted the bottleneck of genomic studies from the sequencers that obtain the DNA samples to the software that performs the analysis of these samples. The existing software for methylation analysis does not seem to scale efficiently neither with the size of the dataset nor with the length of the reads to be analyzed. As it is expected that the sequencers will provide longer and longer reads in the near future, efficient and scalable methylation software should be developed. Results: We present a new software tool, called HPG-Methyl, which efficiently maps bis…

Statistics and ProbabilityMutation rateTime FactorsComputer scienceReal-time computingBisulfite sequencingMolecular Sequence DataGenomicsParallel computingcomputer.software_genremedicine.disease_causeBiochemistryGenomeBottleneckchemistry.chemical_compoundSoftwareMutation RateDatabases GeneticmedicineHumansSulfitesMolecular BiologyMutationMulti-core processorGenomeBase Sequencebusiness.industryHigh-Throughput Nucleotide SequencingMethylationGenomicsDNA MethylationOriginal PapersComputer Science ApplicationsComputational MathematicsComputational Theory and MathematicschemistryDNA methylationScalabilityMutationCompilerbusinesscomputerSequence AnalysisDNAAlgorithmsSoftwareBioinformatics (Oxford, England)
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A hypothetical model of the influence of inorganic phosphate on the kinetics of pyruvate kinase

2000

This paper presents a simple solution to the problem of approximating the calculated curve of reaction progress to the measured curve which is usually disturbed by initial oscillation of auxiliary lactate dehydrogenase (LDH) reaction. The experiments leading to the determination of the apparent Km for phosphoenolpyruvate (PEP) and Vm were performed. For precise estimation of kinetic parameters (Km and Vm) of the M1 isozyme of pyruvate kinase (PK), measured by coupling it to LDH reaction, the sequence of Michaelis‐Menten for pyruvate kinase and second-order kinetics for lactate dehydrogenase reaction as well as a non-zero initial concentration of lactate was assumed. The functions of apparen…

Statistics and ProbabilityStereochemistryPyruvate KinaseIn Vitro TechniquesModels BiologicalGeneral Biochemistry Genetics and Molecular BiologyPhosphatesPhosphoenolpyruvatechemistry.chemical_compoundAdenosine TriphosphateLactate dehydrogenaseAnimalsEnzyme kineticsEnzyme InhibitorsL-Lactate DehydrogenaseKinaseApplied MathematicsGeneral MedicineNADPhosphateAdenosine DiphosphateDissociation constantKineticsBiochemistrychemistryModeling and SimulationCattleUncompetitive inhibitorPhosphoenolpyruvate carboxykinasePyruvate kinaseBiosystems
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Analyse de la distribution spatiale des implantations humaines : apports et limites d’indicateurs multi-échelles et trans-échelles

2020

As human beings, it is easy for us to judge visually whether a distribution is dispersed or concentrated. However, the quantitative formalization of our impressions is problematic. It depends on the scales of the chosen analysis. This dependence of indicators on scales has changed. It is initially considered as a barrier to knowledge, it now reflects the multi-scale organisation of the distributions studied. The central objective of this thesis is to investigate the limits and contribution of multi-scale and trans-scale indicators to the study of the spatial distributions of human settlements.Spatial analysis aims at comparing spatial distributions to a uniform distribution. The way in whic…

Statistique spatialeAnalyse trans-échelleSettlementSpatial statisticsAnalyse fractale[SHS.GEO] Humanities and Social Sciences/GeographyFractal analysisEchelle[SHS.GEO]Humanities and Social Sciences/GeographyMultifractalMultifractaleScalePeuplement
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Semisynthesis of antitumoral acetogenins: SAR of functionalized alkyl-chain bis-tetrahydrofuranic acetogenins, specific inhibitors of mitochondrial c…

2000

The acetogenins of Annonaceae are known by their potent cytotoxic activity. In fact, they are promising candidates as a new future generation of antitumoral drugs to fight against the current chemiotherapic resistant tumors. The main target enzyme of these compounds is complex I (NADH:ubiquinone oxidoreductase) of the mitochondrial respiratory chain, a key enzymatic complex of energy metabolism. In an attempt to characterize the relevant structural factor of the acetogenins that determines the inhibitory potency against this enzyme, we have prepared a series of bis-tetrahydrofuranic acetogenins with different functional groups along the alkyl chain. They comprise several oxo, hydroxylimino,…

StereochemistryAntineoplastic AgentsIn Vitro TechniquesChemical synthesisLactonesStructure-Activity RelationshipOxidoreductaseDrug DiscoveryAnimalsNADH NADPH OxidoreductasesEnzyme InhibitorsFuransAlkylchemistry.chemical_classificationElectron Transport Complex Ibiologybiology.organism_classificationSemisynthesisMitochondriaMitochondrial respiratory chainchemistryEnzyme inhibitorAnnonaceaebiology.proteinMolecular MedicineCattleLactoneJournal of medicinal chemistry
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Cherimolin-1, New Selective Inhibitor of the First Energy-Coupling Site of the NADH:Ubiquinone Oxidoreductase (Complex I)

1997

The mechanism linking electron transport to proton translocation in the NADH:ubiquinone oxidoreductase (complex I of the mitochondrial respiratory chain) is still unclear. Inhibitors acting at different sites of the enzyme are powerful tools to clarify this mechanism. Up to now, a unique inhibitor, the Annonaceous acetogenin rolliniastatin-2, selectively blocks the most internal proton-translocation site. This study introduces cherimolin-1, a new acetogenin that inhibits the complex I with this special mode of action, which is more easily available from the plant material. Moreover, the mode of action of this scarce type of complex I inhibitor is further characterized.

StereochemistryBiophysicsEnergy couplingBiologyBiochemistryLactonesStructure-Activity Relationshipchemistry.chemical_compoundOxidoreductaseNAD(P)H Dehydrogenase (Quinone)AnimalsStructure–activity relationshipFuransMode of actionMolecular Biologychemistry.chemical_classificationBinding SitesPlant ExtractsCell BiologyElectron transport chainEnzymeMitochondrial respiratory chainchemistryFruitAcetogeninCattleEnergy MetabolismBiochemical and Biophysical Research Communications
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Gamma-lactone-Functionalized antitumoral acetogenins are the most potent inhibitors of mitochondrial complex I.

2001

To study the relevance of the terminal alpha,beta-unsaturated gamma-methyl-gamma-lactone moiety of the antitumoral acetogenins of Annonaceae for potent mitochondrial complex I inhibition, we have prepared a series of semisynthetic acetogenins with modifications only in this part of the molecule, from the natural rolliniastatin-1 (1) and cherimolin-1 (2). Some of the hydroxylated derivatives (1b, 1d and 1e) in addition to two infrequent natural beta-hydroxy gamma-methyl gamma-lactone acetogenins, laherradurin (3) and itrabin (4), are more potent complex I inhibitors than any other known compounds.

StereochemistryClinical BiochemistrySubmitochondrial ParticlesPharmaceutical ScienceAntineoplastic AgentsMitochondrionBiochemistryMitochondria HeartLactonesMagnoliopsidaMultienzyme ComplexesDrug DiscoveryMoietyAnimalsNADH NADPH OxidoreductasesFuransMolecular Biologychemistry.chemical_classificationElectron Transport Complex IbiologyMolecular StructureOrganic ChemistryBiological activitybiology.organism_classificationIn vitroEnzymechemistryEnzyme inhibitorAnnonaceaebiology.proteinMolecular MedicineCattleLactoneBioorganicmedicinal chemistry letters
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